MD09G1199000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0010887
Physical Location & Seq
Forward (+)
18172529 .. 18173200
672 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1199000.v1.1.491

Sequence Viewer

Length: 228 bp
ATGGCGAGTAATTCTACGACTTCTGCTCTTGTGACCCTCTTCATGTTTGCCATGGTACTGTCTCCGATTTCAACCTCTGAGGCAGCTCGATCCACTTTTATAGTTTCAGATGCAACATGTCCTGCTTGTGTATGCTGCCCCGGCTCGGTACCAAAAGGCTCTTGCTGCAAATGTTGTGCTAGTTCAACACCACCAATTAACTCTCTGTCCAACAAAGGGGCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

7.51

Weight (kDa)

8.17

Isoelectric Point (pI)

52.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 148
AclWI GGATC 1 cut(s) 84
AfaI GTAC 2 cut(s) 57, 150
AfiI CCNNNNNNNGG 2 cut(s) 145, 216
AflIII ACRYGT 1 cut(s) 116
AgsI TTSAA 2 cut(s) 72, 186
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 1 cut(s) 84
ApeKI GCWGC 3 cut(s) 83, 135, 165
Asp718I GGTACC 1 cut(s) 148
AsuC2I CCSGG 1 cut(s) 141
BanI GGYRCC 1 cut(s) 148
BanII GRGCYC 1 cut(s) 223
BbvI GCAGC 3 cut(s) 95, 122, 152
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 1 cut(s) 180
BisI GCNGC 3 cut(s) 84, 136, 166
BlsI GCNGC 3 cut(s) 85, 137, 167
Bme1390I CCNGG 1 cut(s) 141
BmiI GGNNCC 2 cut(s) 150, 222
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 51, 139
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 216
BseDI CCNNGG 2 cut(s) 51, 139
BseLI CCNNNNNNNGG 2 cut(s) 145, 216
BseMII CTCAG 1 cut(s) 69
BseXI GCAGC 3 cut(s) 95, 122, 152
BshNI GGYRCC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 145, 216
BsmAI GTCTC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 223
Bsp143I GATC 1 cut(s) 89
Bsp19I CCATGG 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 70
BspLI GGNNCC 2 cut(s) 150, 222
BspPI GGATC 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 148
BssECI CCNNGG 2 cut(s) 51, 139
BssMI GATC 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 78
BstDSI CCRYGG 1 cut(s) 51
BstKTI GATC 1 cut(s) 92
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 1 cut(s) 89
BstMWI GCNNNNNNNGC 2 cut(s) 141, 165
BstNSI RCATGY 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 139
BstV1I GCAGC 3 cut(s) 95, 122, 152
BtgI CCRYGG 1 cut(s) 51
Csp6I GTAC 2 cut(s) 56, 149
CviAII CATG 4 cut(s) 43, 52, 117, 225
CviJI RGCY 4 cut(s) 86, 144, 159, 221
CviKI_1 RGCY 4 cut(s) 86, 144, 159, 221
CviQI GTAC 2 cut(s) 56, 149
DdeI CTNAG 1 cut(s) 78
DpnI GATC 1 cut(s) 91
DpnII GATC 1 cut(s) 89
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 4 cut(s) 46, 55, 120, 228
FaiI YATR 6 cut(s) 44, 53, 101, 118, 133, 226
FatI CATG 4 cut(s) 42, 51, 116, 224
Fnu4HI GCNGC 3 cut(s) 84, 136, 166
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 3 cut(s) 84, 136, 166
FspBI CTAG 1 cut(s) 180
GluI GCNGC 3 cut(s) 84, 136, 166
HapII CCGG 1 cut(s) 141
Hin1II CATG 4 cut(s) 46, 55, 120, 228
HpaII CCGG 1 cut(s) 141
Hpy188I TCNGA 3 cut(s) 66, 79, 109
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 113, 168
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 165
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 4 cut(s) 46, 55, 120, 228
KpnI GGTACC 1 cut(s) 152
Kzo9I GATC 1 cut(s) 89
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 2 cut(s) 135, 154
Lsp1109I GCAGC 3 cut(s) 95, 122, 152
LweI GCATC 1 cut(s) 100
MaeI CTAG 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 91
MboI GATC 1 cut(s) 89
MboII GAAGA 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 2 cut(s) 10, 195
MnlI CCTC 3 cut(s) 47, 73, 85
MseI TTAA 1 cut(s) 198
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 141
MwoI GCNNNNNNNGC 2 cut(s) 141, 165
NciI CCSGG 1 cut(s) 141
NcoI CCATGG 1 cut(s) 51
NdeII GATC 1 cut(s) 89
NlaIII CATG 4 cut(s) 46, 55, 120, 228
NlaIV GGNNCC 2 cut(s) 150, 222
NmuCI GTSAC 1 cut(s) 31
NspI RCATGY 1 cut(s) 120
PciI ACATGT 1 cut(s) 116
PkrI GCNGC 3 cut(s) 85, 137, 167
PscI ACATGT 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 150, 222
RsaI GTAC 2 cut(s) 57, 150
RsaNI GTAC 2 cut(s) 56, 149
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 3 cut(s) 84, 136, 166
Sau3AI GATC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 1 cut(s) 223
SetI ASST 2 cut(s) 77, 88
SfaNI GCATC 1 cut(s) 100
Sse9I AATT 2 cut(s) 10, 195
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 139
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 88
TasI AATT 2 cut(s) 10, 195
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 3 cut(s) 83, 135, 165
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 31
XceI RCATGY 1 cut(s) 120
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.