AT3G21460

electron carrier protein disulfide oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013933
Physical Location & Seq
Reverse (-)
7557297 .. 7557969
673 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21460.1

Sequence Viewer

Length: 309 bp
ATGGATGTGGTAGCAAGATTAGCGTCGCAAAGAGCGGTGGTGATATTCAGCAAGAGTACGTGTTGCATGTCTCATGCAATTAAACGGTTGTTTTACGAGCAAGGTGTGAGCCCGGCAATTGTAGAGATCGACCAAGACATGTATGGGAAAGATATCGAGTGGGCCTTGGCCCGATTAGGCTGTAGCCCTACGGTTCCTGCGGTTTTTGTTGGAGGGAAATTCGTAGGAACGGCCAATACTGTCATGACTCTTCATCTCAATGGATCATTGAAAATATTGCTCAAGGAGGCTGGTGCTTTGTGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

102

Amino Acids

11.06

Weight (kDa)

8.54

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 1.4e-16 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21460
fragaria_vesca FvH4_4g17430
malus_domestica MD13G1172200.v1.1 MD16G1173600.v1.1
prunus_persica Prupe.1G140500_v2.0.a1
pyrus_communis pycom13g14770 pycom16g14550
rosa_chinensis RchiOBHm_Chr4g0421361
rosa_laevigata RLG00000007695
rosa_multiflora Rmu_sc0003052.1_g000007
rosa_roxburghii Rroxscaffold_5G00363620
rosa_rugosa Rorug04G0170500
rosa_samantha Rh4AG231300 Rh4BG234300 Rh4CG245700 Rh4DG229800
rosa_wichuraiana Rw4G020270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 35
AciI CCGC 2 cut(s) 35, 200
AclWI GGATC 1 cut(s) 271
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 1 cut(s) 218
AfaI GTAC 1 cut(s) 58
AflIII ACRYGT 2 cut(s) 59, 138
AgsI TTSAA 1 cut(s) 271
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 1 cut(s) 271
AoxI GGCC 3 cut(s) 162, 168, 231
ApoI RAATTY 1 cut(s) 218
AspS9I GGNCC 2 cut(s) 162, 169
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 52
BanII GRGCYC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 246
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 162, 169
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 10
BshFI GGCC 3 cut(s) 164, 170, 233
BsiSI CCGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 75
BsnI GGCC 3 cut(s) 164, 170, 233
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 2 cut(s) 126, 263
BspACI CCGC 2 cut(s) 35, 200
BspANI GGCC 3 cut(s) 164, 170, 233
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 1 cut(s) 271
BsrBI CCGCTC 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 2 cut(s) 126, 263
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 3 cut(s) 87, 193, 241
Bst6I CTCTTC 1 cut(s) 255
BstBAI YACGTR 1 cut(s) 60
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 129, 266
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 2 cut(s) 126, 263
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNSI RCATGY 2 cut(s) 70, 142
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 181
BsuRI GGCC 3 cut(s) 164, 170, 233
BtsCI GGATG 1 cut(s) 10
CciI TCATGA 1 cut(s) 243
Cfr13I GGNCC 2 cut(s) 162, 169
CseI GACGC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 57
CviAII CATG 4 cut(s) 67, 74, 139, 244
CviJI RGCY 8 cut(s) 111, 164, 170, 180, 186, 233, 290, 304
CviKI_1 RGCY 8 cut(s) 111, 164, 170, 180, 186, 233, 290, 304
CviQI GTAC 1 cut(s) 57
DpnI GATC 2 cut(s) 128, 265
DpnII GATC 2 cut(s) 126, 263
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 113
Eco32I GATATC 1 cut(s) 154
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 4 cut(s) 70, 77, 142, 247
FaiI YATR 5 cut(s) 68, 75, 140, 144, 245
FatI CATG 4 cut(s) 66, 73, 138, 243
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 113
HaeIII GGCC 3 cut(s) 164, 170, 233
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 12
Hin1II CATG 4 cut(s) 70, 77, 142, 247
HinfI GANTC 1 cut(s) 247
HpaII CCGG 1 cut(s) 113
HphI GGTGA 1 cut(s) 52
Hpy188III TCNNGA 1 cut(s) 244
Hpy99I CGWCG 1 cut(s) 28
HpyCH4III ACNGT 3 cut(s) 87, 193, 241
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 66, 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 4 cut(s) 70, 77, 142, 247
Kzo9I GATC 2 cut(s) 126, 263
LpnPI CCDG 3 cut(s) 126, 210, 276
MaeII ACGT 1 cut(s) 59
MalI GATC 2 cut(s) 128, 265
MbiI CCGCTC 1 cut(s) 35
MboI GATC 2 cut(s) 126, 263
MboII GAAGA 1 cut(s) 242
MfeI CAATTG 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 3 cut(s) 78, 117, 218
MlyI GAGTC 1 cut(s) 241
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 2 cut(s) 206, 280
MseI TTAA 1 cut(s) 81
MslI CAYNNNNRTG 1 cut(s) 258
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
MunI CAATTG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 20
NciI CCSGG 1 cut(s) 113
NdeII GATC 2 cut(s) 126, 263
NlaIII CATG 4 cut(s) 70, 77, 142, 247
NlaIV GGNNCC 1 cut(s) 195
NspI RCATGY 2 cut(s) 70, 142
PagI TCATGA 1 cut(s) 243
PciI ACATGT 1 cut(s) 138
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
Ppu21I YACGTR 1 cut(s) 60
PscI ACATGT 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 2 cut(s) 162, 169
PsrI GAACNNNNNNTAC 2 cut(s) 220, 252
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 1 cut(s) 81
Sau3AI GATC 2 cut(s) 126, 263
Sau96I GGNCC 2 cut(s) 162, 169
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 113
SetI ASST 2 cut(s) 62, 106
SfcI CTRYAG 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 3 cut(s) 78, 117, 218
SsiI CCGC 2 cut(s) 35, 200
SspI AATATT 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 3 cut(s) 87, 193, 241
TaiI ACGT 1 cut(s) 62
TaqI TCGA 2 cut(s) 129, 156
TasI AATT 3 cut(s) 78, 117, 218
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TspDTI ATGAA 1 cut(s) 242
XapI RAATTY 1 cut(s) 218
XceI RCATGY 2 cut(s) 70, 142
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.