Rh4AG231300

Monothiol glutaredoxin-S10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0013933
Physical Location & Seq
Reverse (-)
53461337 .. 53462183
847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG231300.1

Sequence Viewer

Length: 309 bp
ATGGACCGAGTAGCGAAATTGGCATCACAGAAGGCTGTGGTGATCTTCAGCAAGAGCTCATGCTGCATGTCGCATGCAATCAAGAGACTATTCTATGAGCAAGGCGTAAGCCCTGCAATCTACGAGCTTGACGAGGAGTCGAGAGGGAAGGAGATGGAGTGGGCTCTGATGAGACTAGGGTGCCAACCGTCGGTTCCGGCGGTGTTCATTGGGGGGAAATTTGTGGGATCTGCCAACACAATCATGACCCTTCATCTTAATGGCTCCCTAAAGAAGTTGCTAAAAGATGCTGGAGCTCTATGGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

102

Amino Acids

11.21

Weight (kDa)

9.12

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 3e-15 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21460
fragaria_vesca FvH4_4g17430
malus_domestica MD13G1172200.v1.1 MD16G1173600.v1.1
prunus_persica Prupe.1G140500_v2.0.a1
pyrus_communis pycom13g14770 pycom16g14550
rosa_chinensis RchiOBHm_Chr4g0421361
rosa_laevigata RLG00000007695
rosa_multiflora Rmu_sc0003052.1_g000007
rosa_roxburghii Rroxscaffold_5G00363620
rosa_rugosa Rorug04G0170500
rosa_samantha Rh4AG231300 Rh4BG234300 Rh4CG245700 Rh4DG229800
rosa_wichuraiana Rw4G020270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 180
AciI CCGC 1 cut(s) 200
AclWI GGATC 1 cut(s) 235
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 190
AhdI GACNNNNNGTC 1 cut(s) 136
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AluBI AGCT 3 cut(s) 57, 127, 296
AluI AGCT 3 cut(s) 57, 127, 296
Alw21I GWGCWC 2 cut(s) 59, 298
Alw26I GTCTC 2 cut(s) 79, 166
AlwI GGATC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 52
AvaII GGWCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 180
BanII GRGCYC 3 cut(s) 59, 166, 298
Bbv12I GWGCWC 2 cut(s) 59, 298
BbvI GCAGC 1 cut(s) 50
BccI CCATC 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 79, 166
BfaI CTAG 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 305
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 4
BmeRI GACNNNNNGTC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 182, 195, 265
BmsI GCATC 2 cut(s) 32, 277
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 59, 298
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 2 cut(s) 79, 166
Bsp1286I GDGCHC 3 cut(s) 59, 166, 298
Bsp143I GATC 2 cut(s) 42, 227
BspACI CCGC 1 cut(s) 200
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 3 cut(s) 182, 195, 265
BspPI GGATC 1 cut(s) 235
BspT107I GGYRCC 1 cut(s) 180
BssMI GATC 2 cut(s) 42, 227
Bst4CI ACNGT 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 75
BstKTI GATC 2 cut(s) 45, 230
BstMAI GTCTC 2 cut(s) 79, 166
BstMBI GATC 2 cut(s) 42, 227
BstMWI GCNNNNNNNGC 2 cut(s) 20, 63
BstNSI RCATGY 2 cut(s) 70, 77
BstSFI CTRYAG 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
Cac8I GCNNGC 1 cut(s) 75
CciI TCATGA 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 4 cut(s) 60, 67, 74, 244
CviJI RGCY 8 cut(s) 35, 57, 111, 127, 164, 264, 296, 304
CviKI_1 RGCY 8 cut(s) 35, 57, 111, 127, 164, 264, 296, 304
DpnI GATC 2 cut(s) 44, 229
DpnII GATC 2 cut(s) 42, 227
DriI GACNNNNNGTC 1 cut(s) 136
Eam1105I GACNNNNNGTC 1 cut(s) 136
Ecl136II GAGCTC 2 cut(s) 57, 296
Eco24I GRGCYC 3 cut(s) 59, 166, 298
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 2 cut(s) 57, 296
Eco57I CTGAAG 1 cut(s) 31
EcoICRI GAGCTC 2 cut(s) 57, 296
EcoT38I GRGCYC 3 cut(s) 59, 166, 298
FaeI CATG 4 cut(s) 63, 70, 77, 247
FaiI YATR 6 cut(s) 61, 68, 75, 96, 245, 301
FatI CATG 4 cut(s) 59, 66, 73, 243
Fnu4HI GCNGC 1 cut(s) 64
FriOI GRGCYC 3 cut(s) 59, 166, 298
Fsp4HI GCNGC 1 cut(s) 64
FspBI CTAG 1 cut(s) 176
GluI GCNGC 1 cut(s) 64
HapII CCGG 1 cut(s) 197
Hin1II CATG 4 cut(s) 63, 70, 77, 247
HinfI GANTC 1 cut(s) 137
HpaII CCGG 1 cut(s) 197
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 3 cut(s) 82, 141, 244
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 3 cut(s) 25, 142, 260
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4V TGCA 3 cut(s) 66, 77, 116
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 63
Hsp92II CATG 4 cut(s) 63, 70, 77, 247
Kzo9I GATC 2 cut(s) 42, 227
LmnI GCTCC 2 cut(s) 269, 293
LpnPI CCDG 3 cut(s) 126, 210, 276
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 2 cut(s) 32, 277
MaeI CTAG 1 cut(s) 176
MalI GATC 2 cut(s) 44, 229
MboI GATC 2 cut(s) 42, 227
MboII GAAGA 1 cut(s) 37
MflI RGATCY 1 cut(s) 227
MhlI GDGCHC 3 cut(s) 59, 166, 298
MluCI AATT 2 cut(s) 17, 218
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 2 cut(s) 127, 137
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 2 cut(s) 242, 258
MspI CCGG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 20, 63
NdeII GATC 2 cut(s) 42, 227
NlaIII CATG 4 cut(s) 63, 70, 77, 247
NlaIV GGNNCC 3 cut(s) 182, 195, 265
NspI RCATGY 2 cut(s) 70, 77
PaeI GCATGC 1 cut(s) 77
PagI TCATGA 1 cut(s) 243
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
Psp124BI GAGCTC 2 cut(s) 59, 298
PspN4I GGNNCC 3 cut(s) 182, 195, 265
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 227
RseI CAYNNNNRTG 2 cut(s) 242, 258
SacI GAGCTC 2 cut(s) 59, 298
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 2 cut(s) 42, 227
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 3 cut(s) 59, 166, 298
SetI ASST 3 cut(s) 59, 129, 298
SfaNI GCATC 2 cut(s) 32, 277
SfcI CTRYAG 1 cut(s) 305
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 2 cut(s) 242, 258
SphI GCATGC 1 cut(s) 77
Sse9I AATT 2 cut(s) 17, 218
SsiI CCGC 1 cut(s) 200
SspMI CTAG 1 cut(s) 176
SstI GAGCTC 2 cut(s) 59, 298
TaaI ACNGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 140
TaqII GACCGA 1 cut(s) 21
TasI AATT 2 cut(s) 17, 218
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 2 cut(s) 196, 242
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 218
XceI RCATGY 2 cut(s) 70, 77
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.