Rorug04G0170500

Monothiol glutaredoxin-S10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0013933
Physical Location & Seq
Forward (+)
30068434 .. 30069510
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0170500.1

Sequence Viewer

Length: 1077 bp
ATGGGTTTGAAAAGGAAAAGAAGCAGTGAGTTGGGTGAGTGGGTTTTGGGAGATTTGATTGGCAAGGGGGGTTTTGGGAGTGTGTATAAGGCCTATCCACTTAAGCTCGAGAAAGGGTCTCCCGCTATCATGGCCGTTAAGGTCGCTGAGGTTTCTGATCCACAAAAGGTCGATGCTTTATTGACCGAGGCCAAACTTCTCTCTCAGTTTCAGGACTGCCCTTTTGTTATCAACTCTTTTGGAGAACAGTGGACATATAAGTCTCATCATAATTCTTTCTCTTTCAATCTGCTATTAGAATTTGCGGCCGGAGGCACTATAAGAGATAGGATTCAGAAATCCGCATCCGGCTTGTCCGAATGTGAGATTAAAGAGTTCACCAGGTCAGTTCTTAGTGGTCTCCAGTGCATTCATGACAAAGGTTATGTGCATTGCGACATAAAGCCCGATAACATTCTTCTTGTGCACGACATGACTTCTCATGTCGATTTTGTGGCTAAGATAGGAGACTTTGGATTGACAAAGAGCGCTCAAAATGAGTATTCTCGCCAAGGCACCGCATGGTATTTGCCTCCTGAAACTGTTATCAGTAACATTCAAGGGAAGCCATCAGACATTTGGGCACTAGGATGTTTAGTTCTAGAGATGTTGACTGGAACCTTGTGGCCTTGCAAGACAAGTGAGGACTTAGGCGGTTGGGTTTCAAATCCAATTATTCCTTCACACTTGTCCGAGGAGGCCAAGGATTTTTTGGCAAAATGTCTGCATATAGATGCTTCCAAGAGATTTACGGCTGAGAGGCTCTTGACTCACTCATTTCTTATGAGTAAACAGAGCGTTGAACAAGTAGCTAAAGTGCCCGCATTGTCACAATCTCAGCATTGTGATAATCGGTTGCCTAGTTTTATACCCTTAGGGGACTCTAGCTCCCAAGAGGCACAAAAGAACAAAGAGGGTTCTGGTTTATATGATAATACCATTTTTCCTTTGGCACTCATGTCAAGACCTGCTAGACCTGTGGTTGCAGACACATGGTGCATAAAGCCAACAACTTTTGTTGTAATGGGCGCCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

358

Amino Acids

39.41

Weight (kDa)

6.56

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 17 - 274 1.8e-49 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 17 - 269 9.2e-28 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21460
fragaria_vesca FvH4_4g17430
malus_domestica MD13G1172200.v1.1 MD16G1173600.v1.1
prunus_persica Prupe.1G140500_v2.0.a1
pyrus_communis pycom13g14770 pycom16g14550
rosa_chinensis RchiOBHm_Chr4g0421361
rosa_laevigata RLG00000007695
rosa_multiflora Rmu_sc0003052.1_g000007
rosa_roxburghii Rroxscaffold_5G00363620
rosa_rugosa Rorug04G0170500
rosa_samantha Rh4AG231300 Rh4BG234300 Rh4CG245700 Rh4DG229800
rosa_wichuraiana Rw4G020270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 259
Acc36I ACCTGC 1 cut(s) 1015
AccB1I GGYRCC 2 cut(s) 554, 1067
AciI CCGC 7 cut(s) 123, 305, 342, 558, 693, 861, 1071
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 2 cut(s) 132, 306
AcsI RAATTY 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 1068
AdeI CACNNNGTG 1 cut(s) 1035
AfeI AGCGCT 1 cut(s) 529
AflII CTTAAG 1 cut(s) 101
AgsI TTSAA 5 cut(s) 10, 286, 599, 705, 842
AjnI CCWGG 1 cut(s) 380
AjuI GAANNNNNNNTTGG 2 cut(s) 703, 735
AloI GAACNNNNNNTCC 2 cut(s) 621, 653
AluBI AGCT 3 cut(s) 106, 851, 927
AluI AGCT 3 cut(s) 106, 851, 927
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 4 cut(s) 123, 267, 404, 501
Alw44I GTGCAC 1 cut(s) 464
AlwI GGATC 1 cut(s) 152
Ama87I CYCGRG 1 cut(s) 107
Aor51HI AGCGCT 1 cut(s) 529
AoxI GGCC 6 cut(s) 90, 132, 189, 306, 665, 738
ApaLI GTGCAC 1 cut(s) 464
ApoI RAATTY 1 cut(s) 299
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
AspLEI GCGC 2 cut(s) 530, 1070
AsuHPI GGTGA 2 cut(s) 47, 370
AvaI CYCGRG 1 cut(s) 107
AxyI CCTNAGG 1 cut(s) 913
BaeGI GKGCMC 3 cut(s) 468, 625, 861
BanI GGYRCC 2 cut(s) 554, 1067
Bbv12I GWGCWC 1 cut(s) 468
BbvCI CCTCAGC 1 cut(s) 147
BccI CCATC 1 cut(s) 616
BceAI ACGGC 2 cut(s) 119, 807
BciT130I CCWGG 1 cut(s) 382
BcoDI GTCTC 4 cut(s) 123, 267, 404, 501
BfaI CTAG 5 cut(s) 626, 641, 900, 924, 1011
BfoI RGCGCY 2 cut(s) 531, 1071
BfrI CTTAAG 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 1015
BisI GCNGC 2 cut(s) 306, 1071
BlsI GCNGC 2 cut(s) 307, 1072
Bme1390I CCNGG 1 cut(s) 382
BmeT110I CYCGRG 1 cut(s) 107
BmiI GGNNCC 3 cut(s) 556, 658, 1069
BmrFI CCNGG 1 cut(s) 382
BmsI GCATC 3 cut(s) 163, 353, 763
BpmI CTGGAG 1 cut(s) 386
Bpu10I CCTNAGC 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 1068
BsaI GGTCTC 2 cut(s) 123, 404
BsaJI CCNNGG 4 cut(s) 186, 550, 732, 741
BsaXI ACNNNNNCTCC 2 cut(s) 911, 941
Bse1I ACTGG 2 cut(s) 403, 658
Bse21I CCTNAGG 1 cut(s) 913
Bse3DI GCAATG 1 cut(s) 430
BseBI CCWGG 1 cut(s) 382
BseDI CCNNGG 4 cut(s) 186, 550, 732, 741
BseGI GGATG 2 cut(s) 344, 635
BseMI GCAATG 1 cut(s) 430
BseMII CTCAG 4 cut(s) 138, 218, 786, 890
BseNI ACTGG 2 cut(s) 403, 658
BseRI GAGGAG 1 cut(s) 749
BseSI GKGCMC 3 cut(s) 468, 625, 861
BseX3I CGGCCG 1 cut(s) 306
Bsh1285I CGRYCG 1 cut(s) 309
BshFI GGCC 6 cut(s) 92, 134, 191, 308, 667, 740
BshNI GGYRCC 2 cut(s) 554, 1067
BsiEI CGRYCG 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 468
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 2 cut(s) 309, 348
BslFI GGGAC 1 cut(s) 932
BsmAI GTCTC 4 cut(s) 123, 267, 404, 501
BsmFI GGGAC 1 cut(s) 932
BsmI GAATGC 1 cut(s) 408
BsnI GGCC 6 cut(s) 92, 134, 191, 308, 667, 740
Bso31I GGTCTC 2 cut(s) 123, 404
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 3 cut(s) 468, 625, 861
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 7 cut(s) 123, 305, 342, 558, 693, 861, 1071
BspANI GGCC 6 cut(s) 92, 134, 191, 308, 667, 740
BspCNI CTCAG 4 cut(s) 139, 217, 787, 889
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 3 cut(s) 556, 658, 1069
BspMI ACCTGC 1 cut(s) 1015
BspPI GGATC 1 cut(s) 152
BspT107I GGYRCC 2 cut(s) 554, 1067
BspTI CTTAAG 1 cut(s) 101
BspTNI GGTCTC 2 cut(s) 123, 404
BsrDI GCAATG 1 cut(s) 430
BsrI ACTGG 2 cut(s) 403, 658
BssECI CCNNGG 4 cut(s) 186, 550, 732, 741
BssMI GATC 1 cut(s) 157
BssNI GRCGYC 1 cut(s) 1068
BssT1I CCWWGG 2 cut(s) 550, 741
Bst2UI CCWGG 1 cut(s) 382
Bst4CI ACNGT 2 cut(s) 249, 583
BstACI GRCGYC 1 cut(s) 1068
BstAFI CTTAAG 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 861
BstDEI CTNAG 8 cut(s) 147, 204, 392, 498, 688, 795, 876, 913
BstF5I GGATG 2 cut(s) 344, 635
BstH2I RGCGCY 2 cut(s) 531, 1071
BstHHI GCGC 2 cut(s) 530, 1070
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 4 cut(s) 123, 267, 404, 501
BstMBI GATC 1 cut(s) 157
BstMCI CGRYCG 1 cut(s) 309
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 382
BstSCI CCNGG 1 cut(s) 380
BstSLI GKGCMC 3 cut(s) 468, 625, 861
BstZI CGGCCG 1 cut(s) 306
Bsu36I CCTNAGG 1 cut(s) 913
BsuRI GGCC 6 cut(s) 92, 134, 191, 308, 667, 740
BtsCI GGATG 2 cut(s) 344, 635
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 3 cut(s) 31, 254, 410
BveI ACCTGC 1 cut(s) 1015
Cac8I GCNNGC 1 cut(s) 861
CciI TCATGA 1 cut(s) 412
CfoI GCGC 2 cut(s) 530, 1070
CsiI ACCWGGT 1 cut(s) 380
CviAII CATG 7 cut(s) 130, 413, 472, 482, 561, 997, 1032
DdeI CTNAG 8 cut(s) 147, 204, 392, 498, 688, 795, 876, 913
DinI GGCGCC 1 cut(s) 1069
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
DraIII CACNNNGTG 1 cut(s) 1035
DrdI GACNNNNNNGTC 1 cut(s) 259
DseDI GACNNNNNNGTC 1 cut(s) 259
EaeI YGGCCR 2 cut(s) 132, 306
EagI CGGCCG 1 cut(s) 306
EclXI CGGCCG 1 cut(s) 306
Eco130I CCWWGG 2 cut(s) 550, 741
Eco147I AGGCCT 1 cut(s) 92
Eco31I GGTCTC 2 cut(s) 123, 404
Eco47III AGCGCT 1 cut(s) 529
Eco52I CGGCCG 1 cut(s) 306
Eco81I CCTNAGG 1 cut(s) 913
Eco88I CYCGRG 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 380
EcoT14I CCWWGG 2 cut(s) 550, 741
EgeI GGCGCC 1 cut(s) 1069
EheI GGCGCC 1 cut(s) 1069
ErhI CCWWGG 2 cut(s) 550, 741
FaeI CATG 7 cut(s) 133, 416, 475, 485, 564, 1000, 1035
FaqI GGGAC 1 cut(s) 932
FatI CATG 7 cut(s) 129, 412, 471, 481, 560, 996, 1031
FauI CCCGC 2 cut(s) 130, 868
Fnu4HI GCNGC 2 cut(s) 306, 1071
FokI GGATG 2 cut(s) 331, 642
Fsp4HI GCNGC 2 cut(s) 306, 1071
FspBI CTAG 5 cut(s) 626, 641, 900, 924, 1011
GlaI GCGC 2 cut(s) 529, 1069
GluI GCNGC 2 cut(s) 306, 1071
GsuI CTGGAG 1 cut(s) 386
HaeII RGCGCY 2 cut(s) 531, 1071
HaeIII GGCC 6 cut(s) 92, 134, 191, 308, 667, 740
HapII CCGG 2 cut(s) 309, 348
HhaI GCGC 2 cut(s) 530, 1070
Hin1I GRCGYC 1 cut(s) 1068
Hin1II CATG 7 cut(s) 133, 416, 475, 485, 564, 1000, 1035
Hin6I GCGC 2 cut(s) 528, 1068
HinP1I GCGC 2 cut(s) 528, 1068
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HinfI GANTC 3 cut(s) 331, 808, 920
HpaII CCGG 2 cut(s) 309, 348
HphI GGTGA 2 cut(s) 47, 370
Hpy166II GTNNAC 5 cut(s) 252, 378, 466, 651, 830
Hpy188I TCNGA 5 cut(s) 157, 336, 358, 613, 733
Hpy188III TCNNGA 7 cut(s) 109, 212, 413, 575, 641, 805, 1002
Hpy8I GTNNAC 5 cut(s) 252, 378, 466, 651, 830
HpyAV CCTTC 1 cut(s) 729
HpyCH4III ACNGT 2 cut(s) 249, 583
HpyCH4V TGCA 7 cut(s) 408, 430, 466, 672, 766, 1025, 1038
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 8 cut(s) 147, 204, 392, 498, 688, 795, 876, 913
Hsp92I GRCGYC 1 cut(s) 1068
Hsp92II CATG 7 cut(s) 133, 416, 475, 485, 564, 1000, 1035
HspAI GCGC 2 cut(s) 528, 1068
KasI GGCGCC 1 cut(s) 1067
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 932
LweI GCATC 3 cut(s) 163, 353, 763
MabI ACCWGGT 1 cut(s) 380
MaeI CTAG 5 cut(s) 626, 641, 900, 924, 1011
MaeIII GTNAC 2 cut(s) 590, 867
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 1 cut(s) 449
MhlI GDGCHC 3 cut(s) 468, 625, 861
MluCI AATT 3 cut(s) 271, 299, 711
Mly113I GGCGCC 1 cut(s) 1068
MlyI GAGTC 2 cut(s) 802, 914
MseI TTAA 3 cut(s) 102, 138, 369
MslI CAYNNNNRTG 2 cut(s) 628, 771
MspCI CTTAAG 1 cut(s) 101
MspI CCGG 2 cut(s) 309, 348
MspR9I CCNGG 1 cut(s) 382
Mva1269I GAATGC 1 cut(s) 408
MvaI CCWGG 1 cut(s) 382
MwoI GCNNNNNNNGC 1 cut(s) 131
NarI GGCGCC 1 cut(s) 1068
NdeII GATC 1 cut(s) 157
NlaIII CATG 7 cut(s) 133, 416, 475, 485, 564, 1000, 1035
NlaIV GGNNCC 3 cut(s) 556, 658, 1069
NmuCI GTSAC 1 cut(s) 867
PaeR7I CTCGAG 1 cut(s) 107
PagI TCATGA 1 cut(s) 412
PceI AGGCCT 1 cut(s) 92
PctI GAATGC 1 cut(s) 408
PfeI GAWTC 1 cut(s) 331
PkrI GCNGC 2 cut(s) 307, 1072
PleI GAGTC 2 cut(s) 802, 914
PluTI GGCGCC 1 cut(s) 1071
PpsI GAGTC 2 cut(s) 802, 914
Psp6I CCWGG 1 cut(s) 380
PspGI CCWGG 1 cut(s) 380
PspN4I GGNNCC 3 cut(s) 556, 658, 1069
RseI CAYNNNNRTG 2 cut(s) 628, 771
SaqAI TTAA 3 cut(s) 102, 138, 369
SatI GCNGC 2 cut(s) 306, 1071
Sau3AI GATC 1 cut(s) 157
SchI GAGTC 2 cut(s) 802, 914
ScrFI CCNGG 1 cut(s) 382
SduI GDGCHC 3 cut(s) 468, 625, 861
SexAI ACCWGGT 1 cut(s) 380
SfaNI GCATC 3 cut(s) 163, 353, 763
SfoI GGCGCC 1 cut(s) 1069
Sfr274I CTCGAG 1 cut(s) 107
SlaI CTCGAG 1 cut(s) 107
SmiMI CAYNNNNRTG 2 cut(s) 628, 771
SmlI CTYRAG 2 cut(s) 101, 107
SmoI CTYRAG 2 cut(s) 101, 107
Sse9I AATT 3 cut(s) 271, 299, 711
SseBI AGGCCT 1 cut(s) 92
SsiI CCGC 7 cut(s) 123, 305, 342, 558, 693, 861, 1071
SspDI GGCGCC 1 cut(s) 1067
SspMI CTAG 5 cut(s) 626, 641, 900, 924, 1011
StuI AGGCCT 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 380
StyI CCWWGG 2 cut(s) 550, 741
TaaI ACNGT 2 cut(s) 249, 583
TaqI TCGA 3 cut(s) 108, 171, 486
TaqII GACCGA 1 cut(s) 200
TasI AATT 3 cut(s) 271, 299, 711
TauI GCSGC 2 cut(s) 308, 1073
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 3 cut(s) 102, 138, 369
Tru9I TTAA 3 cut(s) 102, 138, 369
TscAI CASTG 3 cut(s) 31, 254, 410
TseFI GTSAC 1 cut(s) 867
Tsp45I GTSAC 1 cut(s) 867
TspDTI ATGAA 1 cut(s) 401
TspRI CASTG 3 cut(s) 31, 254, 410
Vha464I CTTAAG 1 cut(s) 101
VneI GTGCAC 1 cut(s) 464
XapI RAATTY 1 cut(s) 299
XbaI TCTAGA 1 cut(s) 640
XcmI CCANNNNNNNNNTGG 3 cut(s) 615, 748, 985
XhoI CTCGAG 1 cut(s) 107
XspI CTAG 5 cut(s) 626, 641, 900, 924, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.