Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003052.1

Orthogroup ID

OG0013933

Physical Location & Seq

Genomic Coordinates Forward (+)

24091 .. 24399

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003052.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atggaccgagtagcgaaattggcgtcacagaaggctgtggtgatcttcagcaagagctcatgctgcatgtcgcatgcaatcaagagactattctatgagcaaggcgtaagccctgcaatctacgagcttgacgaggagtcgagagggaaggagatggagtgggctctgatgagactagggtgccaaccgtcggttccggcggtgttcattggggggaaatttgtgggatctgccaacacaatcatgacccttcatcttaatggctccctaaagaagttgctaaaagatgctggagctctatggctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

102

Amino Acids

11.21

Weight (kDa)

9.12

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21460
fragaria_vesca	FvH4_4g17430
malus_domestica	MD13G1172200.v1.1 MD16G1173600.v1.1
prunus_persica	Prupe.1G140500_v2.0.a1
pyrus_communis	pycom13g14770 pycom16g14550
rosa_chinensis	RchiOBHm_Chr4g0421361
rosa_laevigata	RLG00000007695
rosa_multiflora	Rmu_sc0003052.1_g000007
rosa_roxburghii	Rroxscaffold_5G00363620
rosa_rugosa	Rorug04G0170500
rosa_samantha	Rh4AG231300 Rh4BG234300 Rh4CG245700 Rh4DG229800
rosa_wichuraiana	Rw4G020270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	180
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	31
AcyI	GRCGYC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	190
AhdI	GACNNNNNGTC	1 cut(s)	136
AjuI	GAANNNNNNNTTGG	2 cut(s)	177, 209
AluBI	AGCT	3 cut(s)	57, 127, 296
AluI	AGCT	3 cut(s)	57, 127, 296
Alw21I	GWGCWC	2 cut(s)	59, 298
Alw26I	GTCTC	2 cut(s)	79, 166
AlwI	GGATC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	63
ApoI	RAATTY	1 cut(s)	218
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	3 cut(s)	59, 166, 298
Bbv12I	GWGCWC	2 cut(s)	59, 298
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	79, 166
BfaI	CTAG	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	305
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	4
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	182, 195, 265
BmsI	GCATC	1 cut(s)	277
BsaHI	GRCGYC	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	180
BsiHKAI	GWGCWC	2 cut(s)	59, 298
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	2 cut(s)	79, 166
Bsp1286I	GDGCHC	3 cut(s)	59, 166, 298
Bsp143I	GATC	2 cut(s)	42, 227
BspACI	CCGC	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	3 cut(s)	182, 195, 265
BspPI	GGATC	1 cut(s)	235
BspT107I	GGYRCC	1 cut(s)	180
BssMI	GATC	2 cut(s)	42, 227
BssNI	GRCGYC	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	75
BstKTI	GATC	2 cut(s)	45, 230
BstMAI	GTCTC	2 cut(s)	79, 166
BstMBI	GATC	2 cut(s)	42, 227
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 63
BstNSI	RCATGY	2 cut(s)	70, 77
BstSFI	CTRYAG	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	75
CciI	TCATGA	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	12
CviAII	CATG	4 cut(s)	60, 67, 74, 244
CviJI	RGCY	8 cut(s)	35, 57, 111, 127, 164, 264, 296, 304
CviKI_1	RGCY	8 cut(s)	35, 57, 111, 127, 164, 264, 296, 304
DpnI	GATC	2 cut(s)	44, 229
DpnII	GATC	2 cut(s)	42, 227
DriI	GACNNNNNGTC	1 cut(s)	136
Eam1105I	GACNNNNNGTC	1 cut(s)	136
Ecl136II	GAGCTC	2 cut(s)	57, 296
Eco24I	GRGCYC	3 cut(s)	59, 166, 298
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	2 cut(s)	57, 296
Eco57I	CTGAAG	1 cut(s)	31
EcoICRI	GAGCTC	2 cut(s)	57, 296
EcoT38I	GRGCYC	3 cut(s)	59, 166, 298
FaeI	CATG	4 cut(s)	63, 70, 77, 247
FaiI	YATR	6 cut(s)	61, 68, 75, 96, 245, 301
FatI	CATG	4 cut(s)	59, 66, 73, 243
Fnu4HI	GCNGC	1 cut(s)	64
FriOI	GRGCYC	3 cut(s)	59, 166, 298
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	1 cut(s)	64
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	12
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	4 cut(s)	63, 70, 77, 247
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	3 cut(s)	82, 141, 244
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	3 cut(s)	25, 142, 260
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4V	TGCA	3 cut(s)	66, 77, 116
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 63
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	4 cut(s)	63, 70, 77, 247
Kzo9I	GATC	2 cut(s)	42, 227
LmnI	GCTCC	2 cut(s)	269, 293
LpnPI	CCDG	3 cut(s)	126, 210, 276
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	2 cut(s)	44, 229
MboI	GATC	2 cut(s)	42, 227
MboII	GAAGA	1 cut(s)	37
MflI	RGATCY	1 cut(s)	227
MhlI	GDGCHC	3 cut(s)	59, 166, 298
MluCI	AATT	2 cut(s)	17, 218
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	2 cut(s)	127, 137
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	2 cut(s)	242, 258
MspI	CCGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	20, 63
NdeII	GATC	2 cut(s)	42, 227
NlaIII	CATG	4 cut(s)	63, 70, 77, 247
NlaIV	GGNNCC	3 cut(s)	182, 195, 265
NmuCI	GTSAC	1 cut(s)	24
NspI	RCATGY	2 cut(s)	70, 77
PaeI	GCATGC	1 cut(s)	77
PagI	TCATGA	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	65
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Psp124BI	GAGCTC	2 cut(s)	59, 298
PspN4I	GGNNCC	3 cut(s)	182, 195, 265
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	227
RseI	CAYNNNNRTG	2 cut(s)	242, 258
SacI	GAGCTC	2 cut(s)	59, 298
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	2 cut(s)	42, 227
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	146
SduI	GDGCHC	3 cut(s)	59, 166, 298
SetI	ASST	3 cut(s)	59, 129, 298
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	242, 258
SphI	GCATGC	1 cut(s)	77
Sse9I	AATT	2 cut(s)	17, 218
SsiI	CCGC	1 cut(s)	200
SspMI	CTAG	1 cut(s)	176
SstI	GAGCTC	2 cut(s)	59, 298
TaaI	ACNGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	140
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	17, 218
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	1 cut(s)	63
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	2 cut(s)	196, 242
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	218
XceI	RCATGY	2 cut(s)	70, 77
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.