MD13G1172200.v1.1

Monothiol glutaredoxin-S10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0013933
Physical Location & Seq
Forward (+)
14101048 .. 14101356
309 bp
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UTR
Exon/CDS
Intron
MD13G1172200.v1.1.491

Sequence Viewer

Length: 309 bp
ATGGATCGTGTAGCAAAATTAGCATCACAAAAGGCCGTAGTCATATTCAGCAAGAGCTCGTGCTGCATGTCCCATGCAATCAAGAGATTGTTTTACGAACAAGGAGTGAGTCCTGCAATCTATGAGCTCGATGAGGAGTCAAGAGGGAAGGAGATGGAGTGGGCTTTGATAAGGCTAGGGTGCCAACCCTCAGTTCCTGCTGTCTTCATTGGTGGCAAACTTGTGGGATCAGCCAATACAGTCATGACACTTCATCTCAATGGTTCGCTAAAGAAATTGCTAAAAGATGCAGGAGCATTGTGGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

103

Amino Acids

11.14

Weight (kDa)

9.12

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 1e-14 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21460
fragaria_vesca FvH4_4g17430
malus_domestica MD13G1172200.v1.1 MD16G1173600.v1.1
prunus_persica Prupe.1G140500_v2.0.a1
pyrus_communis pycom13g14770 pycom16g14550
rosa_chinensis RchiOBHm_Chr4g0421361
rosa_laevigata RLG00000007695
rosa_multiflora Rmu_sc0003052.1_g000007
rosa_roxburghii Rroxscaffold_5G00363620
rosa_rugosa Rorug04G0170500
rosa_samantha Rh4AG231300 Rh4BG234300 Rh4CG245700 Rh4DG229800
rosa_wichuraiana Rw4G020270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 180
AclWI GGATC 2 cut(s) 12, 235
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AluBI AGCT 2 cut(s) 57, 127
AluI AGCT 2 cut(s) 57, 127
Alw21I GWGCWC 2 cut(s) 59, 129
AlwI GGATC 2 cut(s) 12, 235
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 63
BanI GGYRCC 1 cut(s) 180
BanII GRGCYC 2 cut(s) 59, 129
BauI CACGAG 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 196
Bbv12I GWGCWC 2 cut(s) 59, 129
BbvI GCAGC 1 cut(s) 50
BccI CCATC 1 cut(s) 148
BceAI ACGGC 1 cut(s) 20
BfaI CTAG 1 cut(s) 176
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 182
BmsI GCATC 2 cut(s) 32, 277
BpiI GAAGAC 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
BseMII CTCAG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 50
BshFI GGCC 1 cut(s) 35
BshNI GGYRCC 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 59, 129
BslFI GGGAC 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 1 cut(s) 35
Bsp1286I GDGCHC 2 cut(s) 59, 129
Bsp143I GATC 2 cut(s) 4, 227
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 203
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 182
BspPI GGATC 2 cut(s) 12, 235
BspT107I GGYRCC 1 cut(s) 180
BssMI GATC 2 cut(s) 4, 227
BssSI CACGAG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 241
BstDEI CTNAG 1 cut(s) 190
BstKTI GATC 2 cut(s) 7, 230
BstMBI GATC 2 cut(s) 4, 227
BstMWI GCNNNNNNNGC 2 cut(s) 20, 63
BstNSI RCATGY 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 196
BsuRI GGCC 1 cut(s) 35
CaiI CAGNNNCTG 1 cut(s) 197
CciI TCATGA 1 cut(s) 243
CviAII CATG 3 cut(s) 67, 74, 244
CviJI RGCY 7 cut(s) 35, 57, 127, 164, 175, 233, 304
CviKI_1 RGCY 7 cut(s) 35, 57, 127, 164, 175, 233, 304
DdeI CTNAG 1 cut(s) 190
DpnI GATC 2 cut(s) 6, 229
DpnII GATC 2 cut(s) 4, 227
Ecl136II GAGCTC 2 cut(s) 57, 127
Eco24I GRGCYC 2 cut(s) 59, 129
Eco53kI GAGCTC 2 cut(s) 57, 127
EcoICRI GAGCTC 2 cut(s) 57, 127
EcoT38I GRGCYC 2 cut(s) 59, 129
FaeI CATG 3 cut(s) 70, 77, 247
FaiI YATR 5 cut(s) 44, 68, 75, 123, 245
FaqI GGGAC 1 cut(s) 55
FatI CATG 3 cut(s) 66, 73, 243
Fnu4HI GCNGC 1 cut(s) 64
FriOI GRGCYC 2 cut(s) 59, 129
Fsp4HI GCNGC 1 cut(s) 64
FspBI CTAG 1 cut(s) 176
GluI GCNGC 1 cut(s) 64
HaeIII GGCC 1 cut(s) 35
Hin1II CATG 3 cut(s) 70, 77, 247
HinfI GANTC 2 cut(s) 109, 137
Hpy188III TCNNGA 3 cut(s) 82, 141, 244
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 4 cut(s) 66, 77, 116, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 63
HpyF3I CTNAG 1 cut(s) 190
Hsp92II CATG 3 cut(s) 70, 77, 247
Kzo9I GATC 2 cut(s) 4, 227
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 3 cut(s) 126, 210, 276
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 2 cut(s) 32, 277
MaeI CTAG 1 cut(s) 176
MalI GATC 2 cut(s) 6, 229
MboI GATC 2 cut(s) 4, 227
MboII GAAGA 1 cut(s) 196
MhlI GDGCHC 2 cut(s) 59, 129
MluCI AATT 2 cut(s) 17, 275
MlyI GAGTC 2 cut(s) 118, 146
MnlI CCTC 3 cut(s) 127, 137, 199
MslI CAYNNNNRTG 1 cut(s) 258
MwoI GCNNNNNNNGC 2 cut(s) 20, 63
NdeII GATC 2 cut(s) 4, 227
NlaIII CATG 3 cut(s) 70, 77, 247
NlaIV GGNNCC 1 cut(s) 182
NspI RCATGY 1 cut(s) 70
PagI TCATGA 1 cut(s) 243
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 2 cut(s) 117, 145
PpsI GAGTC 2 cut(s) 117, 145
Psp124BI GAGCTC 2 cut(s) 59, 129
PspN4I GGNNCC 1 cut(s) 182
PstNI CAGNNNCTG 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 258
SacI GAGCTC 2 cut(s) 59, 129
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 2 cut(s) 4, 227
SchI GAGTC 2 cut(s) 118, 146
SduI GDGCHC 2 cut(s) 59, 129
SetI ASST 2 cut(s) 59, 129
SfaNI GCATC 2 cut(s) 32, 277
SmiMI CAYNNNNRTG 1 cut(s) 258
Sse9I AATT 2 cut(s) 17, 275
SspMI CTAG 1 cut(s) 176
SstI GAGCTC 2 cut(s) 59, 129
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 129
TasI AATT 2 cut(s) 17, 275
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 2 cut(s) 196, 242
XceI RCATGY 1 cut(s) 70
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.