FvH4_4g17430

Monothiol glutaredoxin-S10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013933
Physical Location & Seq
Reverse (-)
21368999 .. 21369746
748 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17430.t1

Sequence Viewer

Length: 309 bp
ATGGACCGAGTAGCAAAGTTGGCGTCACAGAAGGCTGTAGTGATCTTCAGTAAGAGCTCGTGCTGCATGTCGCACGCAATCAAGAGACTGTTCTATGAACAAGGCGTAAGCCCTGCAATCTACGAGCTCGACGAGGAGTCAAGAGGGAAGGAGATGGAGTGGGCTCTGATGAGGCTAGGTTGCCAGCCGTCGGTGCCGGCGGTGTTCATTGGGGGAAAATTTGTAGGATCTGCCAACACAGTCATGACCCTTCATCTTAATGGCACCCTAAAGAAGTTGCTTAAAGATGCAGGAGCCCTATGGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

103

Amino Acids

11.21

Weight (kDa)

9.12

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 3e-15 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21460
fragaria_vesca FvH4_4g17430
malus_domestica MD13G1172200.v1.1 MD16G1173600.v1.1
prunus_persica Prupe.1G140500_v2.0.a1
pyrus_communis pycom13g14770 pycom16g14550
rosa_chinensis RchiOBHm_Chr4g0421361
rosa_laevigata RLG00000007695
rosa_multiflora Rmu_sc0003052.1_g000007
rosa_roxburghii Rroxscaffold_5G00363620
rosa_rugosa Rorug04G0170500
rosa_samantha Rh4AG231300 Rh4BG234300 Rh4CG245700 Rh4DG229800
rosa_wichuraiana Rw4G020270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 193, 263
AciI CCGC 1 cut(s) 200
AclWI GGATC 1 cut(s) 235
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 31
AcyI GRCGYC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 190
AhdI GACNNNNNGTC 1 cut(s) 136
AluBI AGCT 2 cut(s) 57, 127
AluI AGCT 2 cut(s) 57, 127
Alw21I GWGCWC 2 cut(s) 59, 129
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 218
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BanI GGYRCC 2 cut(s) 193, 263
BanII GRGCYC 4 cut(s) 59, 129, 166, 298
BauI CACGAG 1 cut(s) 58
Bbv12I GWGCWC 2 cut(s) 59, 129
BbvI GCAGC 1 cut(s) 50
BccI CCATC 1 cut(s) 148
BceAI ACGGC 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 1 cut(s) 176
BfmI CTRYAG 2 cut(s) 36, 305
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 4
BmeRI GACNNNNNGTC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 195, 265, 295
BmsI GCATC 1 cut(s) 277
BsaHI GRCGYC 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse118I RCCGGY 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 50
BshNI GGYRCC 2 cut(s) 193, 263
BsiHKAI GWGCWC 2 cut(s) 59, 129
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 79
Bsp1286I GDGCHC 4 cut(s) 59, 129, 166, 298
Bsp143I GATC 2 cut(s) 42, 227
BspACI CCGC 1 cut(s) 200
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 3 cut(s) 195, 265, 295
BspPI GGATC 1 cut(s) 235
BspT107I GGYRCC 2 cut(s) 193, 263
BsrFI RCCGGY 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 196
BssMI GATC 2 cut(s) 42, 227
BssNI GRCGYC 1 cut(s) 23
BssSI CACGAG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 58
Bst4CI ACNGT 2 cut(s) 90, 241
BstACI GRCGYC 1 cut(s) 23
BstC8I GCNNGC 3 cut(s) 75, 185, 198
BstKTI GATC 2 cut(s) 45, 230
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 2 cut(s) 42, 227
BstMWI GCNNNNNNNGC 3 cut(s) 20, 63, 193
BstNSI RCATGY 1 cut(s) 70
BstSFI CTRYAG 2 cut(s) 36, 305
BstV1I GCAGC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
Cac8I GCNNGC 3 cut(s) 75, 185, 198
CciI TCATGA 1 cut(s) 243
Cfr10I RCCGGY 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 12
CviAII CATG 2 cut(s) 67, 244
CviJI RGCY 9 cut(s) 35, 57, 111, 127, 164, 175, 187, 296, 304
CviKI_1 RGCY 9 cut(s) 35, 57, 111, 127, 164, 175, 187, 296, 304
DpnI GATC 2 cut(s) 44, 229
DpnII GATC 2 cut(s) 42, 227
DriI GACNNNNNGTC 1 cut(s) 136
Eam1105I GACNNNNNGTC 1 cut(s) 136
Ecl136II GAGCTC 2 cut(s) 57, 127
Eco24I GRGCYC 4 cut(s) 59, 129, 166, 298
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 2 cut(s) 57, 127
Eco57I CTGAAG 1 cut(s) 31
EcoICRI GAGCTC 2 cut(s) 57, 127
EcoT38I GRGCYC 4 cut(s) 59, 129, 166, 298
FaeI CATG 2 cut(s) 70, 247
FaiI YATR 4 cut(s) 68, 96, 245, 301
FatI CATG 2 cut(s) 66, 243
Fnu4HI GCNGC 1 cut(s) 64
FriOI GRGCYC 4 cut(s) 59, 129, 166, 298
Fsp4HI GCNGC 1 cut(s) 64
FspBI CTAG 1 cut(s) 176
GluI GCNGC 1 cut(s) 64
HapII CCGG 1 cut(s) 197
HgaI GACGC 1 cut(s) 12
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 2 cut(s) 70, 247
HinfI GANTC 1 cut(s) 137
HpaII CCGG 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 3 cut(s) 82, 141, 244
Hpy99I CGWCG 2 cut(s) 134, 193
HpyAV CCTTC 3 cut(s) 25, 142, 260
HpyCH4III ACNGT 2 cut(s) 90, 241
HpyCH4V TGCA 3 cut(s) 66, 116, 290
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 63, 193
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 2 cut(s) 70, 247
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
Kzo9I GATC 2 cut(s) 42, 227
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 4 cut(s) 126, 197, 210, 276
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 24
MalI GATC 2 cut(s) 44, 229
MboI GATC 2 cut(s) 42, 227
MboII GAAGA 1 cut(s) 37
MflI RGATCY 1 cut(s) 227
MhlI GDGCHC 4 cut(s) 59, 129, 166, 298
MluCI AATT 1 cut(s) 218
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 3 cut(s) 127, 137, 165
MroNI GCCGGC 1 cut(s) 196
MseI TTAA 2 cut(s) 258, 282
MslI CAYNNNNRTG 2 cut(s) 242, 258
MspI CCGG 1 cut(s) 197
MwoI GCNNNNNNNGC 3 cut(s) 20, 63, 193
NaeI GCCGGC 1 cut(s) 198
NdeII GATC 2 cut(s) 42, 227
NgoMIV GCCGGC 1 cut(s) 196
NlaIII CATG 2 cut(s) 70, 247
NlaIV GGNNCC 3 cut(s) 195, 265, 295
NmuCI GTSAC 1 cut(s) 24
NspI RCATGY 1 cut(s) 70
PagI TCATGA 1 cut(s) 243
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdiI GCCGGC 1 cut(s) 198
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
Psp124BI GAGCTC 2 cut(s) 59, 129
PspN4I GGNNCC 3 cut(s) 195, 265, 295
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 227
RseI CAYNNNNRTG 2 cut(s) 242, 258
SacI GAGCTC 2 cut(s) 59, 129
SaqAI TTAA 2 cut(s) 258, 282
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 2 cut(s) 42, 227
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 4 cut(s) 59, 129, 166, 298
SetI ASST 3 cut(s) 59, 129, 181
SfaNI GCATC 1 cut(s) 277
SfcI CTRYAG 2 cut(s) 36, 305
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 2 cut(s) 242, 258
Sse9I AATT 1 cut(s) 218
SsiI CCGC 1 cut(s) 200
SspMI CTAG 1 cut(s) 176
SstI GAGCTC 2 cut(s) 59, 129
TaaI ACNGT 2 cut(s) 90, 241
TaqI TCGA 1 cut(s) 129
TaqII GACCGA 1 cut(s) 21
TasI AATT 1 cut(s) 218
Tru1I TTAA 2 cut(s) 258, 282
Tru9I TTAA 2 cut(s) 258, 282
TseFI GTSAC 1 cut(s) 24
TseI GCWGC 1 cut(s) 63
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 3 cut(s) 111, 196, 242
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 218
XceI RCATGY 1 cut(s) 70
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.