Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017524

Physical Location & Seq

Genomic Coordinates Reverse (-)

7708833 .. 7709933

Gene Structure 1101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTGTAGAGGCTTGAATAATGAAGAGAGCAGAAGAAGTGACGGAGGAGGTTGCCGGAGTCTCTGCACGAGACCGAGTGTTCCGGTAAGGTGTGAGCTTTGCGACGGAGACGCCTCCGTGTTCTGTGAAGCGGACTCGGCGTTCCTCTGTAGAAAATGTGACCGGTGGGTTCATGGAGCGAATTTTCTAGCTTGGAGACACGTAAGGCGCGTGCTATGCACTTCTTGTCAGAAACTCACGCGCCGGTGCCTCGTCGGAGATCATGACTTCCACGTTGTTTTACCGTCGGTGACGACGGTCGGAGAAACCACCGTGGAGAATAGAAGTGAACAAGATAATCATGAGGTTCCGTTTGTTTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010224 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030674 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060090 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

121

Amino Acids

13.66

Weight (kDa)

6.92

Isoelectric Point (pI)

71.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21890 AT4G15248
fragaria_vesca	FvH4_6g43580
malus_domestica	MD09G1104600.v1.1 MD17G1092200.v1.1
prunus_persica	Prupe.3G221100_v2.0.a1
pyrus_communis	pycom17g08930
rosa_chinensis	RchiOBHm_Chr2g0160161
rosa_roxburghii	Rroxscaffold_2G00090000
rosa_rugosa	Rorug02G0482000 Rorug02G0482100
rosa_samantha	Rh2CG531100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	246
AccII	CGCG	2 cut(s)	210, 241
AciI	CCGC	1 cut(s)	131
AcsI	RAATTY	1 cut(s)	181
AcyI	GRCGYC	1 cut(s)	111
AflIII	ACRYGT	1 cut(s)	199
AgeI	ACCGGT	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	16
AloI	GAACNNNNNNTCC	2 cut(s)	125, 157
AluBI	AGCT	2 cut(s)	97, 191
AluI	AGCT	2 cut(s)	97, 191
Alw26I	GTCTC	4 cut(s)	64, 65, 102, 190
ApoI	RAATTY	1 cut(s)	181
AsiGI	ACCGGT	1 cut(s)	162
AspLEI	GCGC	2 cut(s)	210, 243
AsuHPI	GGTGA	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	246
BauI	CACGAG	1 cut(s)	67
BcoDI	GTCTC	4 cut(s)	64, 65, 102, 190
BfaI	CTAG	1 cut(s)	188
BfmI	CTRYAG	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	248, 348
BoxI	GACNNNNGTC	1 cut(s)	296
BsaAI	YACGTR	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	312
BsaWI	WCCGGW	2 cut(s)	82, 162
Bse118I	RCCGGY	2 cut(s)	162, 243
BseDI	CCNNGG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	60
BsgI	GTGCAG	1 cut(s)	49
Bsh1236I	CGCG	2 cut(s)	210, 241
Bsh1285I	CGRYCG	1 cut(s)	300
BshNI	GGYRCC	1 cut(s)	246
BshTI	ACCGGT	1 cut(s)	162
BsiEI	CGRYCG	1 cut(s)	300
BsiSI	CCGG	4 cut(s)	55, 83, 163, 244
BsmAI	GTCTC	4 cut(s)	64, 65, 102, 190
BsmBI	CGTCTC	1 cut(s)	102
Bso31I	GGTCTC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	1 cut(s)	131
BspFNI	CGCG	2 cut(s)	210, 241
BspHI	TCATGA	2 cut(s)	262, 340
BspLI	GGNNCC	2 cut(s)	248, 348
BspT107I	GGYRCC	1 cut(s)	246
BspTNI	GGTCTC	1 cut(s)	64
BsrFI	RCCGGY	2 cut(s)	162, 243
BssAI	RCCGGY	2 cut(s)	162, 243
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	1 cut(s)	259
BssNI	GRCGYC	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	67
Bst2BI	CACGAG	1 cut(s)	67
Bst4CI	ACNGT	3 cut(s)	285, 298, 313
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	1 cut(s)	111
BstBAI	YACGTR	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	212
BstDSI	CCRYGG	1 cut(s)	312
BstFNI	CGCG	2 cut(s)	210, 241
BstHHI	GCGC	2 cut(s)	210, 243
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	4 cut(s)	64, 65, 102, 190
BstMBI	GATC	1 cut(s)	259
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 216
BstPAI	GACNNNNGTC	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	148
BstUI	CGCG	2 cut(s)	210, 241
BtgI	CCRYGG	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	212
CciI	TCATGA	2 cut(s)	262, 340
CfoI	GCGC	2 cut(s)	210, 243
Cfr10I	RCCGGY	2 cut(s)	162, 243
CseI	GACGC	1 cut(s)	119
CspAI	ACCGGT	1 cut(s)	162
CviAII	CATG	3 cut(s)	173, 263, 341
CviJI	RGCY	3 cut(s)	12, 97, 191
CviKI_1	RGCY	3 cut(s)	12, 97, 191
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	64
Esp3I	CGTCTC	1 cut(s)	102
FaeI	CATG	3 cut(s)	176, 266, 344
FaiI	YATR	4 cut(s)	174, 217, 264, 342
FatI	CATG	3 cut(s)	172, 262, 340
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	2 cut(s)	209, 242
HapII	CCGG	4 cut(s)	55, 83, 163, 244
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	2 cut(s)	210, 243
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	3 cut(s)	176, 266, 344
Hin6I	GCGC	2 cut(s)	208, 241
HinP1I	GCGC	2 cut(s)	208, 241
HinfI	GANTC	2 cut(s)	58, 134
HpaII	CCGG	4 cut(s)	55, 83, 163, 244
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	4 cut(s)	231, 257, 302, 365
Hpy188III	TCNNGA	2 cut(s)	263, 341
Hpy8I	GTNNAC	1 cut(s)	329
Hpy99I	CGWCG	4 cut(s)	107, 257, 289, 298
HpyCH4III	ACNGT	3 cut(s)	285, 298, 313
HpyCH4IV	ACGT	2 cut(s)	201, 273
HpyCH4V	TGCA	2 cut(s)	66, 219
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 216
HpySE526I	ACGT	2 cut(s)	201, 273
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	3 cut(s)	176, 266, 344
HspAI	GCGC	2 cut(s)	208, 241
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	4 cut(s)	68, 96, 176, 257
MaeI	CTAG	1 cut(s)	188
MaeII	ACGT	2 cut(s)	201, 273
MaeIII	GTNAC	3 cut(s)	38, 158, 289
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	2 cut(s)	35, 45
MluCI	AATT	1 cut(s)	181
MlyI	GAGTC	2 cut(s)	67, 128
MmeI	TCCRAC	2 cut(s)	235, 280
MnlI	CCTC	6 cut(s)	38, 41, 124, 155, 260, 337
MspI	CCGG	4 cut(s)	55, 83, 163, 244
MvnI	CGCG	2 cut(s)	210, 241
MwoI	GCNNNNNNNGC	2 cut(s)	137, 216
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	3 cut(s)	176, 266, 344
NlaIV	GGNNCC	2 cut(s)	248, 348
NmeAIII	GCCGAG	1 cut(s)	116
NmuCI	GTSAC	3 cut(s)	38, 158, 289
PagI	TCATGA	2 cut(s)	262, 340
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PinAI	ACCGGT	1 cut(s)	162
PleI	GAGTC	2 cut(s)	66, 128
PpsI	GAGTC	2 cut(s)	66, 128
Ppu21I	YACGTR	1 cut(s)	202
PshAI	GACNNNNGTC	1 cut(s)	296
PspN4I	GGNNCC	2 cut(s)	248, 348
Sau3AI	GATC	1 cut(s)	259
SchI	GAGTC	2 cut(s)	67, 128
SetI	ASST	7 cut(s)	52, 92, 99, 193, 204, 276, 348
SfcI	CTRYAG	1 cut(s)	148
SgrAI	CRCCGGYG	1 cut(s)	243
Sse9I	AATT	1 cut(s)	181
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	188
TaaI	ACNGT	3 cut(s)	285, 298, 313
TaiI	ACGT	2 cut(s)	204, 276
TaqII	GACCGA	1 cut(s)	88
TasI	AATT	1 cut(s)	181
TseFI	GTSAC	3 cut(s)	38, 158, 289
Tsp45I	GTSAC	3 cut(s)	38, 158, 289
TspDTI	ATGAA	2 cut(s)	36, 161
TspGWI	ACGGA	4 cut(s)	57, 106, 120, 339
XapI	RAATTY	1 cut(s)	181
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.