Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0017524

Physical Location & Seq

Genomic Coordinates Forward (+)

7634136 .. 7634444

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1104600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTGCAAAGGAGTACAAGAGAGTGGCTTCTGCCTGTCACCAATTATCATTCCTTCAAGAAGGTTGGTTTGTTGTGAACTATGCAACTCAAGGGCTTCATTGTATTGCCTAGCAGATGATGCATTTTTGTGCCGGAAATGTGACCGATGGGTTCATGGGGCTAATTTCTTAGCCCTAAGGCATGCCAGGTGTTTGTTGTGTAAGACATGCCAGAATCTTACTCGAAGATATGTTGTTGGGATTGCGGTGGAGGTGATGTTTCCAACCATTCTTTGTCGGGTAGATAGAAACCAGTGCATGGTCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010224 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030674 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060090 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

103

Amino Acids

11.58

Weight (kDa)

8.89

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21890 AT4G15248
fragaria_vesca	FvH4_6g43580
malus_domestica	MD09G1104600.v1.1 MD17G1092200.v1.1
prunus_persica	Prupe.3G221100_v2.0.a1
pyrus_communis	pycom17g08930
rosa_chinensis	RchiOBHm_Chr2g0160161
rosa_roxburghii	Rroxscaffold_2G00090000
rosa_rugosa	Rorug02G0482000 Rorug02G0482100
rosa_samantha	Rh2CG531100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	298
AciI	CCGC	1 cut(s)	245
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	57
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
AsuHPI	GGTGA	2 cut(s)	30, 265
AxyI	CCTNAGG	1 cut(s)	176
BccI	CCATC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	187
BfaI	CTAG	1 cut(s)	110
Bme1390I	CCNGG	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	187
BmsI	GCATC	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	292
Bse21I	CCTNAGG	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseNI	ACTGG	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	298
BspACI	CCGC	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	169, 176
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 303
BstNI	CCWGG	1 cut(s)	187
BstNSI	RCATGY	2 cut(s)	185, 210
BstSCI	CCNGG	1 cut(s)	185
Bsu36I	CCTNAGG	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	4 cut(s)	155, 182, 207, 298
CviJI	RGCY	5 cut(s)	27, 95, 161, 173, 306
CviKI_1	RGCY	5 cut(s)	27, 95, 161, 173, 306
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	2 cut(s)	169, 176
Eco81I	CCTNAGG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	185
EcoT22I	ATGCAT	1 cut(s)	124
FaeI	CATG	4 cut(s)	158, 185, 210, 301
FaiI	YATR	6 cut(s)	82, 156, 183, 208, 231, 299
FatI	CATG	4 cut(s)	154, 181, 206, 297
FspBI	CTAG	1 cut(s)	110
HapII	CCGG	1 cut(s)	133
Hin1II	CATG	4 cut(s)	158, 185, 210, 301
HinfI	GANTC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	2 cut(s)	30, 265
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188III	TCNNGA	1 cut(s)	57
Hpy8I	GTNNAC	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	54, 63
HpyCH4V	TGCA	4 cut(s)	6, 84, 122, 297
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 303
HpyF3I	CTNAG	2 cut(s)	169, 176
Hsp92II	CATG	4 cut(s)	158, 185, 210, 301
LpnPI	CCDG	6 cut(s)	47, 146, 172, 199, 224, 305
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	36, 140
MboII	GAAGA	1 cut(s)	237
MluCI	AATT	2 cut(s)	42, 163
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	1 cut(s)	244
Mph1103I	ATGCAT	1 cut(s)	124
MslI	CAYNNNNRTG	1 cut(s)	127
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	2 cut(s)	119, 303
NlaIII	CATG	4 cut(s)	158, 185, 210, 301
NmuCI	GTSAC	2 cut(s)	36, 140
NsiI	ATGCAT	1 cut(s)	124
NspI	RCATGY	2 cut(s)	185, 210
PaeI	GCATGC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	214
PflMI	CCANNNNNTGG	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	187
SetI	ASST	4 cut(s)	65, 191, 255, 308
SfaNI	GCATC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	2 cut(s)	42, 163
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	185
TaqI	TCGA	1 cut(s)	223
TaqII	GACCGA	1 cut(s)	159
TasI	AATT	2 cut(s)	42, 163
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	214
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	2 cut(s)	36, 140
Tsp45I	GTSAC	2 cut(s)	36, 140
TspDTI	ATGAA	2 cut(s)	87, 143
TspRI	CASTG	1 cut(s)	299
Van91I	CCANNNNNTGG	1 cut(s)	298
XceI	RCATGY	2 cut(s)	185, 210
XspI	CTAG	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.