Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017524

Physical Location & Seq

Genomic Coordinates Forward (+)

8708841 .. 8709482

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G15248.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTGTAGAGGGTTTGAGAAAGAAGAAGAGAGAAGAAGCGACAATGGAGGATGCCAAAGACTATGCACGGAGAGTCACAAAGCTCCGGTAAGCTGTGAGCTTTGCGGCGAGAACGCCACCGTGTATTGTGAGGCAGACGCAGCTTTCCTTTGTAGGAAATGCGATCGATGGGTCCATTCTGCTAATTTTCTAGCTCGGAGACATCTCCGGCGCGTGATCTGCACGACCTGTCGGAAGCTAACTCGTCGATGTCTTGTCGGTGATAATTTTAATGTTGTTTTACCGGAGATAAGGATGATAGCAAGGATTGAAGAACATAGTAGTGATCACAAAATTCCCTTTGTGTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010224 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030674 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060090 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

117

Amino Acids

13.56

Weight (kDa)

8.54

Isoelectric Point (pI)

73.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21890 AT4G15248
fragaria_vesca	FvH4_6g43580
malus_domestica	MD09G1104600.v1.1 MD17G1092200.v1.1
prunus_persica	Prupe.3G221100_v2.0.a1
pyrus_communis	pycom17g08930
rosa_chinensis	RchiOBHm_Chr2g0160161
rosa_roxburghii	Rroxscaffold_2G00090000
rosa_rugosa	Rorug02G0482000 Rorug02G0482100
rosa_samantha	Rh2CG531100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	213
AciI	CCGC	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	311
AluBI	AGCT	6 cut(s)	83, 93, 100, 143, 194, 238
AluI	AGCT	6 cut(s)	83, 93, 100, 143, 194, 238
Alw26I	GTCTC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	162
BclI	TGATCA	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	1 cut(s)	191
BisI	GCNGC	2 cut(s)	106, 141
BlsI	GCNGC	2 cut(s)	107, 142
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	173
BmsI	GCATC	1 cut(s)	41
Bsa29I	ATCGAT	1 cut(s)	166
BsaWI	WCCGGW	2 cut(s)	85, 283
BseCI	ATCGAT	1 cut(s)	166
BseGI	GGATG	2 cut(s)	56, 300
BseXI	GCAGC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	213
Bsh1285I	CGRYCG	1 cut(s)	166
BshVI	ATCGAT	1 cut(s)	166
BsiEI	CGRYCG	1 cut(s)	166
BsiSI	CCGG	3 cut(s)	86, 208, 284
BsmAI	GTCTC	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	163, 216, 325
BspACI	CCGC	1 cut(s)	105
BspDI	ATCGAT	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	173
BssMI	GATC	3 cut(s)	163, 216, 325
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	56, 300
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	3 cut(s)	166, 219, 328
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	3 cut(s)	163, 216, 325
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 219
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	152
Bsu15I	ATCGAT	1 cut(s)	166
BsuTUI	ATCGAT	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	56, 300
CfoI	GCGC	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	172
ClaI	ATCGAT	1 cut(s)	166
CseI	GACGC	1 cut(s)	146
CviJI	RGCY	6 cut(s)	83, 93, 100, 143, 194, 238
CviKI_1	RGCY	6 cut(s)	83, 93, 100, 143, 194, 238
DpnI	GATC	3 cut(s)	165, 218, 327
DpnII	GATC	3 cut(s)	163, 216, 325
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	172
FaiI	YATR	2 cut(s)	64, 318
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	2 cut(s)	106, 141
FokI	GGATG	2 cut(s)	63, 307
Fsp4HI	GCNGC	2 cut(s)	106, 141
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	2 cut(s)	106, 141
HapII	CCGG	3 cut(s)	86, 208, 284
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	213
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	3 cut(s)	86, 208, 284
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	3 cut(s)	198, 234, 353
Hpy99I	CGWCG	1 cut(s)	249
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	2 cut(s)	66, 222
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 219
HspAI	GCGC	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	163, 216, 325
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	4 cut(s)	99, 221, 241, 297
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	41
MaeI	CTAG	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	3 cut(s)	165, 218, 327
MboI	GATC	3 cut(s)	163, 216, 325
MboII	GAAGA	4 cut(s)	35, 38, 45, 323
MluCI	AATT	3 cut(s)	184, 265, 333
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	2 cut(s)	41, 124
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	321
MspI	CCGG	3 cut(s)	86, 208, 284
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	140, 219
NdeII	GATC	3 cut(s)	163, 216, 325
NlaIV	GGNNCC	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	107, 142
Ple19I	CGATCG	1 cut(s)	166
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	172
PvuI	CGATCG	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	2 cut(s)	106, 141
Sau3AI	GATC	3 cut(s)	163, 216, 325
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	82
SetI	ASST	7 cut(s)	85, 95, 102, 145, 196, 230, 240
SfaNI	GCATC	1 cut(s)	41
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	321
Sse9I	AATT	3 cut(s)	184, 265, 333
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	2 cut(s)	166, 247
TasI	AATT	3 cut(s)	184, 265, 333
TauI	GCSGC	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	74
TspGWI	ACGGA	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	1 cut(s)	333
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.