Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0017524

Physical Location & Seq

Genomic Coordinates Reverse (-)

61192151 .. 61192723

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0482000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGGAAGAAAGTAAGCCAAACATCAGTGAAAATATCTAAGAAAGAGAAGAAGGAGTTTAACAGTTTGATTAGACTCTTGAGGCCTAAAGTCTACATCACTGACAGCTCAAGCTTCAAGTCCCTTGTGCAAGACCTCACCGGCAATGGAAGCTCTAATATTTCAATCGCTACTTCCTCATCACACCCTCAGCAACAGCACAGAGTACCAGTTGTAGATGTTCATGAGGAGTATCAAGAAGAGCCTGAAAGGAGTACTAGTGTCAGTAGTCTGGATGTCTCAACTGATGCATCATTTGATTCTTCTGAGCTGTGGAACCAAGAAATGTTTATGAATGACCAAGAATTAAACCAACTGTGTTACCAGATGTATTCAGACGATACTATAACAACAAATATATTTGAAGGTTCATCACCTTCTGCAGCGGACCAAATGGTGGATATGTTGCCAATTCAAGATCTTGAGTCCTGGCTTTTGGGGACTGAGCCTTTTGATCCCTTCAACATTAATGGTTATGGTCAGATTGATCAAGAGGTCAGCATATTTGACTATGAGCTGTCAGGGCTACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010224 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030674 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060090 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

190

Amino Acids

21.41

Weight (kDa)

4.32

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	29 - 51	3.6e-06	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21890 AT4G15248
fragaria_vesca	FvH4_6g43580
malus_domestica	MD09G1104600.v1.1 MD17G1092200.v1.1
prunus_persica	Prupe.3G221100_v2.0.a1
pyrus_communis	pycom17g08930
rosa_chinensis	RchiOBHm_Chr2g0160161
rosa_roxburghii	Rroxscaffold_2G00090000
rosa_rugosa	Rorug02G0482000 Rorug02G0482100
rosa_samantha	Rh2CG531100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	1 cut(s)	425
AclWI	GGATC	1 cut(s)	488
AfaI	GTAC	2 cut(s)	207, 256
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	5 cut(s)	118, 165, 404, 455, 502
AhlI	ACTAGT	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	467
AluBI	AGCT	5 cut(s)	108, 114, 153, 310, 556
AluI	AGCT	5 cut(s)	108, 114, 153, 310, 556
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	488
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	1 cut(s)	422
AseI	ATTAAT	1 cut(s)	507
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	2 cut(s)	130, 405
AvaII	GGWCC	1 cut(s)	427
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	434
BciT130I	CCWGG	1 cut(s)	469
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	283
BcuI	ACTAGT	1 cut(s)	257
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	420
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
BmcAI	AGTACT	1 cut(s)	256
Bme1390I	CCNGG	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	469
BmsI	GCATC	2 cut(s)	277, 299
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	3 cut(s)	94, 100, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	244, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	469
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	3 cut(s)	203, 297, 474
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	434
BshFI	GGCC	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	2 cut(s)	106, 493
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	1 cut(s)	283
BsmFI	GGGAC	2 cut(s)	106, 493
BsnI	GGCC	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	457, 493, 526
BspACI	CCGC	1 cut(s)	425
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	3 cut(s)	202, 298, 475
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	317
BspMAI	CTGCAG	1 cut(s)	424
BspPI	GGATC	1 cut(s)	488
BspQI	GCTCTTC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	140
BssMI	GATC	3 cut(s)	457, 493, 526
Bst2UI	CCWGG	1 cut(s)	469
Bst4CI	ACNGT	2 cut(s)	65, 357
Bst6I	CTCTTC	1 cut(s)	234
BstDEI	CTNAG	4 cut(s)	39, 189, 306, 483
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	3 cut(s)	460, 496, 529
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	3 cut(s)	457, 493, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 562
BstNI	CCWGG	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	467
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	434
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	2 cut(s)	33, 99
CciI	TCATGA	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	427
Csp6I	GTAC	2 cut(s)	206, 255
CviAII	CATG	1 cut(s)	224
CviQI	GTAC	2 cut(s)	206, 255
DdeI	CTNAG	4 cut(s)	39, 189, 306, 483
DpnI	GATC	3 cut(s)	459, 495, 528
DpnII	GATC	3 cut(s)	457, 493, 526
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco147I	AGGCCT	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	467
EcoT22I	ATGCAT	1 cut(s)	292
FaeI	CATG	1 cut(s)	227
FaiI	YATR	9 cut(s)	225, 332, 386, 398, 443, 516, 542, 552, 571
FaqI	GGGAC	2 cut(s)	106, 493
FatI	CATG	1 cut(s)	223
FbaI	TGATCA	1 cut(s)	526
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	1 cut(s)	141
Hin1II	CATG	1 cut(s)	227
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	3 cut(s)	75, 299, 464
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	2 cut(s)	130, 405
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	3 cut(s)	307, 376, 522
Hpy188III	TCNNGA	7 cut(s)	79, 224, 236, 272, 455, 461, 530
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	4 cut(s)	46, 398, 426, 508
HpyCH4III	ACNGT	2 cut(s)	65, 357
HpyCH4V	TGCA	3 cut(s)	130, 290, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 562
HpyF3I	CTNAG	4 cut(s)	39, 189, 306, 483
Hsp92II	CATG	1 cut(s)	227
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	3 cut(s)	457, 493, 526
LguI	GCTCTTC	1 cut(s)	234
LpnPI	CCDG	8 cut(s)	154, 222, 257, 258, 377, 454, 481, 546
Lsp1109I	GCAGC	1 cut(s)	434
LweI	GCATC	2 cut(s)	277, 299
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	3 cut(s)	459, 495, 528
MboI	GATC	3 cut(s)	457, 493, 526
MboII	GAAGA	4 cut(s)	19, 61, 251, 294
MflI	RGATCY	1 cut(s)	457
MluCI	AATT	2 cut(s)	344, 450
MlyI	GAGTC	2 cut(s)	69, 473
MnlI	CCTC	6 cut(s)	75, 146, 187, 198, 220, 526
Mph1103I	ATGCAT	1 cut(s)	292
MseI	TTAA	3 cut(s)	60, 347, 507
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	469
MvaI	CCWGG	1 cut(s)	469
MwoI	GCNNNNNNNGC	2 cut(s)	150, 562
NdeII	GATC	3 cut(s)	457, 493, 526
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	1 cut(s)	317
NsiI	ATGCAT	1 cut(s)	292
PagI	TCATGA	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	85
PciSI	GCTCTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	299
PflMI	CCANNNNNTGG	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	2 cut(s)	69, 472
PpsI	GAGTC	2 cut(s)	69, 472
PshBI	ATTAAT	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	467
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	427
PstI	CTGCAG	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	2 cut(s)	207, 256
RsaNI	GTAC	2 cut(s)	206, 255
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	3 cut(s)	60, 347, 507
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	3 cut(s)	457, 493, 526
Sau96I	GGNCC	1 cut(s)	427
ScaI	AGTACT	1 cut(s)	256
SchI	GAGTC	2 cut(s)	69, 473
ScrFI	CCNGG	1 cut(s)	469
SetI	ASST	9 cut(s)	110, 116, 138, 155, 312, 409, 418, 537, 558
SfaNI	GCATC	2 cut(s)	277, 299
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	1 cut(s)	427
SmlI	CTYRAG	3 cut(s)	79, 109, 461
SmoI	CTYRAG	3 cut(s)	79, 109, 461
SpeI	ACTAGT	1 cut(s)	257
Sse9I	AATT	2 cut(s)	344, 450
SseBI	AGGCCT	1 cut(s)	85
SsiI	CCGC	1 cut(s)	425
SspI	AATATT	1 cut(s)	160
SspMI	CTAG	1 cut(s)	258
StuI	AGGCCT	1 cut(s)	85
StyD4I	CCNGG	1 cut(s)	467
TaaI	ACNGT	2 cut(s)	65, 357
TasI	AATT	2 cut(s)	344, 450
TatI	WGTACW	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	3 cut(s)	60, 347, 507
Tru9I	TTAA	3 cut(s)	60, 347, 507
TscAI	CASTG	2 cut(s)	33, 106
TseI	GCWGC	1 cut(s)	422
TspDTI	ATGAA	3 cut(s)	212, 347, 399
TspRI	CASTG	2 cut(s)	33, 106
Van91I	CCANNNNNTGG	1 cut(s)	436
VpaK11BI	GGWCC	1 cut(s)	427
VspI	ATTAAT	1 cut(s)	507
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	258
ZrmI	AGTACT	1 cut(s)	256
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.