Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0017524

Physical Location & Seq

Genomic Coordinates Reverse (-)

22178543 .. 22178896

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G221100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTGCAGAGGTGTAGAAGAGAGTGGTTTCCGCCAGCCACCAGTTAGTTCCCCAACAGGGTATGTGTGTTGTGAGCTCTGCAGCAAAAGGGCTTCATTGTATTGCCTAGCAGATGATGCATATTTGTGTAGAAAATGTGACCAATGGGTTCATGAGGCTAATTTCTTAGCTCTCAGGCATGTTAGGTGCCTGCTCTGCAACACATGCCAGAATCTTACTCAAAGATATGTCGTCCGGATTTCGGTCGAGGTGATGCTTCCAACCATTCTGAGTTGGGCGGAGAGAAAACGATGCAGTTCAAATAACAAAAGAAGGCGCTCAACCACACTGAAAAGGCCTTTCCTTTTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010224 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030674 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060090 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

118

Amino Acids

13.61

Weight (kDa)

9.32

Isoelectric Point (pI)

59.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21890 AT4G15248
fragaria_vesca	FvH4_6g43580
malus_domestica	MD09G1104600.v1.1 MD17G1092200.v1.1
prunus_persica	Prupe.3G221100_v2.0.a1
pyrus_communis	pycom17g08930
rosa_chinensis	RchiOBHm_Chr2g0160161
rosa_roxburghii	Rroxscaffold_2G00090000
rosa_rugosa	Rorug02G0482000 Rorug02G0482100
rosa_samantha	Rh2CG531100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	186
AccIII	TCCGGA	1 cut(s)	234
AciI	CCGC	2 cut(s)	31, 278
AfiI	CCNNNNNNNGG	2 cut(s)	57, 241
AgsI	TTSAA	1 cut(s)	300
AluBI	AGCT	2 cut(s)	76, 170
AluI	AGCT	2 cut(s)	76, 170
Alw21I	GWGCWC	1 cut(s)	78
Aor13HI	TCCGGA	1 cut(s)	234
AoxI	GGCC	1 cut(s)	335
ApeKI	GCWGC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	318
AsuHPI	GGTGA	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	79
BfoI	RGCGCY	1 cut(s)	319
BisI	GCNGC	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	188
BmsI	GCATC	3 cut(s)	106, 243, 281
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 241
Bse1I	ACTGG	1 cut(s)	41
BseAI	TCCGGA	1 cut(s)	234
BseLI	CCNNNNNNNGG	2 cut(s)	57, 241
BseMII	CTCAG	2 cut(s)	187, 260
BseNI	ACTGG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	93
BsgI	GTGCAG	1 cut(s)	25
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	337
BshNI	GGYRCC	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	235
BslI	CCNNNNNNNGG	2 cut(s)	57, 241
BsnI	GGCC	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp13I	TCCGGA	1 cut(s)	234
BspACI	CCGC	2 cut(s)	31, 278
BspANI	GGCC	1 cut(s)	337
BspCNI	CTCAG	2 cut(s)	186, 261
BspEI	TCCGGA	1 cut(s)	234
BspHI	TCATGA	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	188
BspMAI	CTGCAG	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	12
BstAPI	GCANNNNNTGC	2 cut(s)	116, 204
BstC8I	GCNNGC	2 cut(s)	35, 191
BstDEI	CTNAG	3 cut(s)	166, 173, 269
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	318
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 195, 204
BstNSI	RCATGY	2 cut(s)	182, 207
BstSFI	CTRYAG	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	326
Cac8I	GCNNGC	2 cut(s)	35, 191
CciI	TCATGA	1 cut(s)	151
CfoI	GCGC	1 cut(s)	318
CviAII	CATG	4 cut(s)	152, 179, 204, 349
CviJI	RGCY	6 cut(s)	37, 76, 92, 158, 170, 337
CviKI_1	RGCY	6 cut(s)	37, 76, 92, 158, 170, 337
DdeI	CTNAG	3 cut(s)	166, 173, 269
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
EciI	GGCGGA	2 cut(s)	20, 293
Ecl136II	GAGCTC	1 cut(s)	76
Eco147I	AGGCCT	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoT22I	ATGCAT	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	78
FaeI	CATG	4 cut(s)	155, 182, 207, 352
FaiI	YATR	7 cut(s)	63, 121, 153, 180, 205, 228, 350
FatI	CATG	4 cut(s)	151, 178, 203, 348
Fnu4HI	GCNGC	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	82
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	1 cut(s)	82
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	1 cut(s)	337
HapII	CCGG	1 cut(s)	235
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	4 cut(s)	155, 182, 207, 352
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	1 cut(s)	235
HphI	GGTGA	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	2 cut(s)	152, 235
HpyAV	CCTTC	1 cut(s)	306
HpyCH4V	TGCA	5 cut(s)	6, 81, 119, 198, 294
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 195, 204
HpyF3I	CTNAG	3 cut(s)	166, 173, 269
Hsp92II	CATG	4 cut(s)	155, 182, 207, 352
HspAI	GCGC	1 cut(s)	316
Kpn2I	TCCGGA	1 cut(s)	234
LpnPI	CCDG	7 cut(s)	42, 47, 54, 160, 203, 221, 248
Lsp1109I	GCAGC	1 cut(s)	93
LweI	GCATC	3 cut(s)	106, 243, 281
MaeI	CTAG	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	137
MboII	GAAGA	1 cut(s)	29
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	1 cut(s)	160
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	2 cut(s)	148, 241
Mph1103I	ATGCAT	1 cut(s)	121
MroI	TCCGGA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	124
MspI	CCGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	3 cut(s)	116, 195, 204
NlaIII	CATG	4 cut(s)	155, 182, 207, 352
NlaIV	GGNNCC	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	137
NsiI	ATGCAT	1 cut(s)	121
NspI	RCATGY	2 cut(s)	182, 207
PagI	TCATGA	1 cut(s)	151
PceI	AGGCCT	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	124
SacI	GAGCTC	1 cut(s)	78
SatI	GCNGC	1 cut(s)	82
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	5 cut(s)	13, 78, 172, 188, 252
SfaNI	GCATC	3 cut(s)	106, 243, 281
SfcI	CTRYAG	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	124
Sse9I	AATT	1 cut(s)	160
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	2 cut(s)	31, 278
SspMI	CTAG	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	78
StuI	AGGCCT	1 cut(s)	337
TaqI	TCGA	1 cut(s)	246
TaqII	GACCGA	1 cut(s)	232
TasI	AATT	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	211
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	81
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	3 cut(s)	84, 140, 337
TspRI	CASTG	1 cut(s)	333
XceI	RCATGY	2 cut(s)	182, 207
XspI	CTAG	1 cut(s)	107
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.