Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012911

Physical Location & Seq

Genomic Coordinates Forward (+)

8017633 .. 8020508

Gene Structure 2876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCAAAGCTCAATGACAATGGAACTACGACCATCAGGTGATTCCGGTTCATCTGACGTCGATGCTGAGATCAGCGATGGCTTTTCACCGCTCGATACTTCTCACAGAGACGTCGCTGATGAAGGTTCGTTGCTGAGAAGAGCAGAGATGTATCAAGACTACATGAAGCAAGTACCAATCCCGACGAATCGTGGCTCGTTGATTCCGTTCACAAGCTGGGTTGGATTAAGCATTTCAATGAAACAGCTTTATGGTCAGCCTCTACATTACCTCACGAATGTTCTCTTACAACGATGGGATCAATCACGATTCGGTACTGATTCTGAAGAACAGAGGTTGGATTCTATCATTCATCCTACTAAAGCTGAAGCTACTATCTGGCTTGTTGAAGAGATTCATCGACTCACTCCTTCTCATCTTCACATGGCTCTTCTTTGGAGATCTGATCCTATGTATCACTCTTTCATTGACCCAATCTTTCCTGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000419 GO:0000428 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0014070 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030880 GO:0031047 GO:0031050 GO:0031323 GO:0032259 GO:0032991 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0043621 GO:0044030 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdDM_RDM1

Protein Analysis

163

Amino Acids

18.69

Weight (kDa)

5.11

Isoelectric Point (pI)

65.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RdDM_RDM1	PF09187	44 - 162	1.9e-65	RNA-directed DNA methylation 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22680
fragaria_vesca	FvH4_4g00760 FvH4_4g00760 FvH4_5g32450
malus_domestica	MD16G1197500.v1.1
prunus_persica	Prupe.1G018500_v2.0.a1
pyrus_communis	pycom16g16640
rosa_chinensis	RchiOBHm_Chr4g0407591
rosa_laevigata	RLG00000008706 RLG00000010156
rosa_multiflora	Rmu_sc0001942.1_g000058
rosa_roxburghii	Rroxscaffold_5G00352200
rosa_rugosa	Rorug04G0080600 Rorug04G0080700 Rorug04G0080800
rosa_samantha	Rh4AG145400 Rh4CG152100
rosa_wichuraiana	Rw4G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	60, 114
AccBSI	CCGCTC	1 cut(s)	91
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	2 cut(s)	306, 440
AcuI	CTGAAG	2 cut(s)	345, 387
AcyI	GRCGYC	2 cut(s)	57, 111
AfaI	GTAC	2 cut(s)	174, 316
AgsI	TTSAA	2 cut(s)	237, 389
AluBI	AGCT	5 cut(s)	9, 216, 247, 365, 371
AluI	AGCT	5 cut(s)	9, 216, 247, 365, 371
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	2 cut(s)	306, 440
Asp700I	GAANNNNTTC	1 cut(s)	393
AsuHPI	GGTGA	2 cut(s)	50, 78
BccI	CCATC	3 cut(s)	40, 71, 288
BcoDI	GTCTC	1 cut(s)	102
BglII	AGATCT	1 cut(s)	440
BmsI	GCATC	1 cut(s)	52
BsaHI	GRCGYC	2 cut(s)	57, 111
BsaWI	WCCGGW	1 cut(s)	44
BseGI	GGATG	1 cut(s)	352
BseMII	CTCAG	3 cut(s)	57, 125, 474
BseYI	CCCAGC	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	102
BsmBI	CGTCTC	1 cut(s)	102
Bsp143I	GATC	4 cut(s)	69, 298, 440, 445
BspACI	CCGC	1 cut(s)	89
BspCNI	CTCAG	3 cut(s)	58, 126, 475
BspPI	GGATC	2 cut(s)	306, 440
BspQI	GCTCTTC	2 cut(s)	133, 435
BsrBI	CCGCTC	1 cut(s)	91
BssMI	GATC	4 cut(s)	69, 298, 440, 445
BssNI	GRCGYC	2 cut(s)	57, 111
Bst6I	CTCTTC	3 cut(s)	133, 384, 435
BstACI	GRCGYC	2 cut(s)	57, 111
BstDEI	CTNAG	3 cut(s)	66, 134, 483
BstF5I	GGATG	1 cut(s)	352
BstKTI	GATC	4 cut(s)	72, 301, 443, 448
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	4 cut(s)	69, 298, 440, 445
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BtgZI	GCGATG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	173, 315
CviAII	CATG	2 cut(s)	163, 424
CviQI	GTAC	2 cut(s)	173, 315
DdeI	CTNAG	3 cut(s)	66, 134, 483
DpnI	GATC	4 cut(s)	71, 300, 442, 447
DpnII	GATC	4 cut(s)	69, 298, 440, 445
Eam1104I	CTCTTC	3 cut(s)	133, 384, 435
EarI	CTCTTC	3 cut(s)	133, 384, 435
Eco57I	CTGAAG	2 cut(s)	345, 387
Esp3I	CGTCTC	1 cut(s)	102
FaeI	CATG	2 cut(s)	166, 427
FaiI	YATR	4 cut(s)	164, 252, 425, 452
FatI	CATG	2 cut(s)	162, 423
FokI	GGATG	1 cut(s)	339
GsaI	CCCAGC	1 cut(s)	220
HapII	CCGG	1 cut(s)	45
Hin1I	GRCGYC	2 cut(s)	57, 111
Hin1II	CATG	2 cut(s)	166, 427
HinfI	GANTC	8 cut(s)	41, 187, 202, 309, 320, 341, 394, 402
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	2 cut(s)	50, 78
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	3 cut(s)	55, 325, 445
Hpy188III	TCNNGA	5 cut(s)	155, 181, 274, 306, 482
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	3 cut(s)	62, 116, 187
HpyAV	CCTTC	2 cut(s)	116, 420
HpyCH4IV	ACGT	2 cut(s)	57, 111
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	3 cut(s)	66, 134, 483
HpySE526I	ACGT	2 cut(s)	57, 111
Hsp92I	GRCGYC	2 cut(s)	57, 111
Hsp92II	CATG	2 cut(s)	166, 427
Kzo9I	GATC	4 cut(s)	69, 298, 440, 445
LguI	GCTCTTC	2 cut(s)	133, 435
LpnPI	CCDG	4 cut(s)	21, 58, 202, 364
LweI	GCATC	1 cut(s)	52
MaeII	ACGT	2 cut(s)	57, 111
MalI	GATC	4 cut(s)	71, 300, 442, 447
MbiI	CCGCTC	1 cut(s)	91
MboI	GATC	4 cut(s)	69, 298, 440, 445
MboII	GAAGA	5 cut(s)	150, 338, 401, 410, 422
MflI	RGATCY	1 cut(s)	440
MlyI	GAGTC	1 cut(s)	396
MmeI	TCCRAC	2 cut(s)	202, 318
MnlI	CCTC	3 cut(s)	270, 281, 327
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	1 cut(s)	227
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	1 cut(s)	45
NdeII	GATC	4 cut(s)	69, 298, 440, 445
NlaIII	CATG	2 cut(s)	166, 427
PciSI	GCTCTTC	2 cut(s)	133, 435
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	7 cut(s)	41, 187, 202, 309, 320, 341, 394
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
PspFI	CCCAGC	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	440
RsaI	GTAC	2 cut(s)	174, 316
RsaNI	GTAC	2 cut(s)	173, 315
RseI	CAYNNNNRTG	1 cut(s)	236
SapI	GCTCTTC	2 cut(s)	133, 435
SaqAI	TTAA	1 cut(s)	227
Sau3AI	GATC	4 cut(s)	69, 298, 440, 445
SchI	GAGTC	1 cut(s)	396
SfaNI	GCATC	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	236
SsiI	CCGC	1 cut(s)	89
TaiI	ACGT	2 cut(s)	60, 114
TaqI	TCGA	3 cut(s)	60, 93, 400
TfiI	GAWTC	7 cut(s)	41, 187, 202, 309, 320, 341, 394
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TspDTI	ATGAA	7 cut(s)	39, 135, 179, 254, 341, 386, 454
TspGWI	ACGGA	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	393
ZraI	GACGTC	2 cut(s)	58, 112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.