RNA-directed DNA methylation 1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G22680 |
| fragaria_vesca | FvH4_4g00760 FvH4_4g00760 FvH4_5g32450 |
| malus_domestica | MD16G1197500.v1.1 |
| prunus_persica | Prupe.1G018500_v2.0.a1 |
| pyrus_communis | pycom16g16640 |
| rosa_chinensis | RchiOBHm_Chr4g0407591 |
| rosa_laevigata | RLG00000008706 RLG00000010156 |
| rosa_multiflora | Rmu_sc0001942.1_g000058 |
| rosa_roxburghii | Rroxscaffold_5G00352200 |
| rosa_rugosa | Rorug04G0080600 Rorug04G0080700 Rorug04G0080800 |
| rosa_samantha | Rh4AG145400 Rh4CG152100 |
| rosa_wichuraiana | Rw4G011810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 62 |
| AflII | CTTAAG | 1 cut(s) | 32 |
| AhlI | ACTAGT | 1 cut(s) | 8 |
| AluBI | AGCT | 3 cut(s) | 41, 102, 118 |
| AluI | AGCT | 3 cut(s) | 41, 102, 118 |
| AspLEI | GCGC | 1 cut(s) | 21 |
| BclI | TGATCA | 1 cut(s) | 70 |
| BcuI | ACTAGT | 1 cut(s) | 8 |
| BfaI | CTAG | 2 cut(s) | 9, 99 |
| BfrI | CTTAAG | 1 cut(s) | 32 |
| BmiI | GGNNCC | 2 cut(s) | 110, 135 |
| BmsI | GCATC | 3 cut(s) | 42, 72, 130 |
| Bpu10I | CCTNAGC | 1 cut(s) | 114 |
| Bse3DI | GCAATG | 1 cut(s) | 179 |
| BseGI | GGATG | 1 cut(s) | 172 |
| BseMI | GCAATG | 1 cut(s) | 179 |
| BseMII | CTCAG | 1 cut(s) | 105 |
| BsmI | GAATGC | 1 cut(s) | 143 |
| Bsp143I | GATC | 1 cut(s) | 70 |
| BspCNI | CTCAG | 1 cut(s) | 106 |
| BspLI | GGNNCC | 2 cut(s) | 110, 135 |
| BspTI | CTTAAG | 1 cut(s) | 32 |
| BsrDI | GCAATG | 1 cut(s) | 179 |
| BssMI | GATC | 1 cut(s) | 70 |
| BstAFI | CTTAAG | 1 cut(s) | 32 |
| BstC8I | GCNNGC | 1 cut(s) | 39 |
| BstDEI | CTNAG | 1 cut(s) | 114 |
| BstF5I | GGATG | 1 cut(s) | 172 |
| BstHHI | GCGC | 1 cut(s) | 21 |
| BstKTI | GATC | 1 cut(s) | 73 |
| BstMBI | GATC | 1 cut(s) | 70 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 82, 115, 161 |
| BtsCI | GGATG | 1 cut(s) | 172 |
| BtsI | GCAGTG | 1 cut(s) | 28 |
| BtsIMutI | CAGTG | 1 cut(s) | 28 |
| Cac8I | GCNNGC | 1 cut(s) | 39 |
| CfoI | GCGC | 1 cut(s) | 21 |
| Csp6I | GTAC | 1 cut(s) | 61 |
| CviJI | RGCY | 5 cut(s) | 41, 76, 102, 109, 118 |
| CviKI_1 | RGCY | 5 cut(s) | 41, 76, 102, 109, 118 |
| CviQI | GTAC | 1 cut(s) | 61 |
| DdeI | CTNAG | 1 cut(s) | 114 |
| DpnI | GATC | 1 cut(s) | 72 |
| DpnII | GATC | 1 cut(s) | 70 |
| EcoT22I | ATGCAT | 1 cut(s) | 145 |
| FaiI | YATR | 2 cut(s) | 69, 153 |
| FbaI | TGATCA | 1 cut(s) | 70 |
| FokI | GGATG | 1 cut(s) | 159 |
| FspBI | CTAG | 2 cut(s) | 9, 99 |
| GlaI | GCGC | 1 cut(s) | 20 |
| HhaI | GCGC | 1 cut(s) | 21 |
| Hin6I | GCGC | 1 cut(s) | 19 |
| HinP1I | GCGC | 1 cut(s) | 19 |
| Hpy188III | TCNNGA | 1 cut(s) | 137 |
| Hpy99I | CGWCG | 1 cut(s) | 126 |
| HpyCH4V | TGCA | 1 cut(s) | 143 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 82, 115, 161 |
| HpyF3I | CTNAG | 1 cut(s) | 114 |
| HspAI | GCGC | 1 cut(s) | 19 |
| Ksp22I | TGATCA | 1 cut(s) | 70 |
| Kzo9I | GATC | 1 cut(s) | 70 |
| LmnI | GCTCC | 1 cut(s) | 114 |
| LpnPI | CCDG | 3 cut(s) | 91, 126, 150 |
| LweI | GCATC | 3 cut(s) | 42, 72, 130 |
| MaeI | CTAG | 2 cut(s) | 9, 99 |
| MalI | GATC | 1 cut(s) | 72 |
| MboI | GATC | 1 cut(s) | 70 |
| MboII | GAAGA | 2 cut(s) | 38, 161 |
| MluCI | AATT | 1 cut(s) | 165 |
| MmeI | TCCRAC | 1 cut(s) | 108 |
| MnlI | CCTC | 1 cut(s) | 124 |
| Mph1103I | ATGCAT | 1 cut(s) | 145 |
| MseI | TTAA | 3 cut(s) | 15, 33, 196 |
| MspCI | CTTAAG | 1 cut(s) | 32 |
| Mva1269I | GAATGC | 1 cut(s) | 143 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 82, 115, 161 |
| NdeII | GATC | 1 cut(s) | 70 |
| NlaIV | GGNNCC | 2 cut(s) | 110, 135 |
| NsiI | ATGCAT | 1 cut(s) | 145 |
| PctI | GAATGC | 1 cut(s) | 143 |
| PspN4I | GGNNCC | 2 cut(s) | 110, 135 |
| RsaI | GTAC | 1 cut(s) | 62 |
| RsaNI | GTAC | 1 cut(s) | 61 |
| SaqAI | TTAA | 3 cut(s) | 15, 33, 196 |
| Sau3AI | GATC | 1 cut(s) | 70 |
| SetI | ASST | 4 cut(s) | 43, 104, 120, 135 |
| SfaNI | GCATC | 3 cut(s) | 42, 72, 130 |
| SgeI | CNNG | 7 cut(s) | 21, 50, 102, 111, 118, 125, 149 |
| SmlI | CTYRAG | 1 cut(s) | 32 |
| SmoI | CTYRAG | 1 cut(s) | 32 |
| SpeI | ACTAGT | 1 cut(s) | 8 |
| Sse9I | AATT | 1 cut(s) | 165 |
| SspMI | CTAG | 2 cut(s) | 9, 99 |
| TasI | AATT | 1 cut(s) | 165 |
| Tru1I | TTAA | 3 cut(s) | 15, 33, 196 |
| Tru9I | TTAA | 3 cut(s) | 15, 33, 196 |
| TscAI | CASTG | 1 cut(s) | 28 |
| TspDTI | ATGAA | 1 cut(s) | 161 |
| TspRI | CASTG | 1 cut(s) | 28 |
| Vha464I | CTTAAG | 1 cut(s) | 32 |
| XspI | CTAG | 2 cut(s) | 9, 99 |
| Zsp2I | ATGCAT | 1 cut(s) | 145 |