Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001942.1

Orthogroup ID

OG0012911

Physical Location & Seq

Genomic Coordinates Forward (+)

240419 .. 240790

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001942.1_g000058.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgagaagggtagagatgtatcaggagtacatgaagcacatcccaatcccaacacactgtggctctgttattccatttacctcatggatgggtttaggtaaatccattaagcagctttatggacaacctctgcattatctcaccaatattcagctaaaacagtgggaccaactgaggatcggctgtgaggatgaatacaggcccttggatgccatcattcatccctgtaaagccgaagccaccatctggctcattgaagaccttcatcgaaacacctcatctcatcatcatgtagccaatctgtggctatcagatccaatgcaccatgcctttattgattccatccttccccagttagacagcagcttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000419 GO:0000428 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0014070 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030880 GO:0031047 GO:0031050 GO:0031323 GO:0032259 GO:0032991 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0043621 GO:0044030 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdDM_RDM1

Protein Analysis

123

Amino Acids

14.4

Weight (kDa)

6.33

Isoelectric Point (pI)

63.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22680
fragaria_vesca	FvH4_4g00760 FvH4_4g00760 FvH4_5g32450
malus_domestica	MD16G1197500.v1.1
prunus_persica	Prupe.1G018500_v2.0.a1
pyrus_communis	pycom16g16640
rosa_chinensis	RchiOBHm_Chr4g0407591
rosa_laevigata	RLG00000008706 RLG00000010156
rosa_multiflora	Rmu_sc0001942.1_g000058
rosa_roxburghii	Rroxscaffold_5G00352200
rosa_rugosa	Rorug04G0080600 Rorug04G0080700 Rorug04G0080800
rosa_samantha	Rh4AG145400 Rh4CG152100
rosa_wichuraiana	Rw4G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	246, 303
AclWI	GGATC	2 cut(s)	185, 308
AdeI	CACNNNGTG	1 cut(s)	59
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	2 cut(s)	246, 303
AgsI	TTSAA	1 cut(s)	257
AluBI	AGCT	3 cut(s)	115, 154, 366
AluI	AGCT	3 cut(s)	115, 154, 366
AlwI	GGATC	2 cut(s)	185, 308
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	2 cut(s)	112, 363
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	2 cut(s)	166, 201
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	4 cut(s)	82, 221, 251, 350
BisI	GCNGC	2 cut(s)	113, 364
BlsI	GCNGC	2 cut(s)	114, 365
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	2 cut(s)	166, 201
BmiI	GGNNCC	1 cut(s)	167
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 303
Bse1I	ACTGG	1 cut(s)	352
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	6 cut(s)	39, 93, 196, 214, 220, 342
BseLI	CCNNNNNNNGG	2 cut(s)	246, 303
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	352
BseXI	GCAGC	1 cut(s)	124
BshFI	GGCC	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	246, 303
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	202
Bsp143I	GATC	2 cut(s)	177, 313
BspANI	GGCC	1 cut(s)	202
BspCNI	CTCAG	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	167
BspPI	GGATC	2 cut(s)	185, 308
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	2 cut(s)	177, 313
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	59, 162
BstDEI	CTNAG	1 cut(s)	173
BstF5I	GGATG	6 cut(s)	39, 93, 196, 214, 220, 342
BstKTI	GATC	2 cut(s)	180, 316
BstMBI	GATC	2 cut(s)	177, 313
BstV1I	GCAGC	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	202
BtsCI	GGATG	6 cut(s)	39, 93, 196, 214, 220, 342
BtsIMutI	CAGTG	2 cut(s)	55, 167
Cfr13I	GGNCC	2 cut(s)	166, 201
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	4 cut(s)	31, 84, 290, 326
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	2 cut(s)	179, 315
DpnII	GATC	2 cut(s)	177, 313
DraIII	CACNNNGTG	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	4 cut(s)	34, 87, 293, 329
FaiI	YATR	5 cut(s)	32, 85, 120, 291, 327
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	4 cut(s)	30, 83, 289, 325
Fnu4HI	GCNGC	2 cut(s)	113, 364
FokI	GGATG	6 cut(s)	26, 100, 203, 207, 221, 329
Fsp4HI	GCNGC	2 cut(s)	113, 364
GluI	GCNGC	2 cut(s)	113, 364
HaeIII	GGCC	1 cut(s)	202
Hin1II	CATG	4 cut(s)	34, 87, 293, 329
HinfI	GANTC	1 cut(s)	338
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	23
HpyAV	CCTTC	2 cut(s)	272, 356
HpyCH4III	ACNGT	2 cut(s)	59, 162
HpyCH4V	TGCA	2 cut(s)	133, 322
HpyF3I	CTNAG	1 cut(s)	173
Hsp92II	CATG	4 cut(s)	34, 87, 293, 329
Kzo9I	GATC	2 cut(s)	177, 313
LpnPI	CCDG	5 cut(s)	8, 184, 232, 238, 365
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	1 cut(s)	199
MalI	GATC	2 cut(s)	179, 315
MboI	GATC	2 cut(s)	177, 313
MboII	GAAGA	1 cut(s)	269
MflI	RGATCY	1 cut(s)	313
MnlI	CCTC	5 cut(s)	91, 138, 168, 181, 286
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	288
NdeII	GATC	2 cut(s)	177, 313
NlaIII	CATG	4 cut(s)	34, 87, 293, 329
NlaIV	GGNNCC	1 cut(s)	167
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	338
PflMI	CCANNNNNTGG	2 cut(s)	246, 303
PkrI	GCNGC	2 cut(s)	114, 365
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	2 cut(s)	166, 201
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	2 cut(s)	113, 364
Sau3AI	GATC	2 cut(s)	177, 313
Sau96I	GGNCC	2 cut(s)	166, 201
SetI	ASST	8 cut(s)	83, 100, 117, 130, 156, 264, 278, 368
SfaNI	GCATC	1 cut(s)	199
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	288
SspI	AATATT	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	59, 162
TaqI	TCGA	1 cut(s)	268
TatI	WGTACW	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	2 cut(s)	62, 167
TseI	GCWGC	2 cut(s)	112, 363
TspDTI	ATGAA	4 cut(s)	47, 207, 209, 254
TspRI	CASTG	2 cut(s)	62, 167
Van91I	CCANNNNNTGG	2 cut(s)	246, 303
VpaK11BI	GGWCC	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	81
XmnI	GAANNNNTTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.