Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012911

Physical Location & Seq

Genomic Coordinates Forward (+)

658144 .. 660616

Gene Structure 2473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAAGAGGCCATATCCATCAAATGAGCATGTTGATATTATATCATCAGATGACTCGTCTTCCTCAGACGCAGAGATGGAAGTCACTACTGAGTATGATAGCAAGCAGTTAATAACATCTGAAGGTGCTTTGATGAGGAGGGCAGAGATGTATCAGGAGTACATGAAGCACGTCCCAATCCCAACACACCGTGGCTCTATAATTCCATTTACCTCATGGATGGGTTTAGGTAAATCCATTAAGCAGCTTTATGGACAACCTCTGCATTATCTCACCAATATTCAGCTAAGACAGTGGGACAAATTGAGGATTGGCAGTGAGGACGAATTCAGGCCCTTGGATGCCATCATTCATCCTTGTAAAGCCGAGGCCACCATATGGCTCATTGAAGAAGTTCACCGAAACACCTCATCTCATCATCATGTAGCCAATATGTGGCTAGCGGATCCAATGCACCATGCCTTTGTTGATTCCATCTTTCCCCAATTAGACAGCAGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000419 GO:0000428 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0014070 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030880 GO:0031047 GO:0031050 GO:0031323 GO:0032259 GO:0032991 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0043621 GO:0044030 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdDM_RDM1

Protein Analysis

168

Amino Acids

19.26

Weight (kDa)

5.71

Isoelectric Point (pI)

63.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RdDM_RDM1	PF09187	44 - 162	1.2e-66	RNA-directed DNA methylation 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22680
fragaria_vesca	FvH4_4g00760 FvH4_4g00760 FvH4_5g32450
malus_domestica	MD16G1197500.v1.1
prunus_persica	Prupe.1G018500_v2.0.a1
pyrus_communis	pycom16g16640
rosa_chinensis	RchiOBHm_Chr4g0407591
rosa_laevigata	RLG00000008706 RLG00000010156
rosa_multiflora	Rmu_sc0001942.1_g000058
rosa_roxburghii	Rroxscaffold_5G00352200
rosa_rugosa	Rorug04G0080600 Rorug04G0080700 Rorug04G0080800
rosa_samantha	Rh4AG145400 Rh4CG152100
rosa_wichuraiana	Rw4G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	378, 435
AciI	CCGC	1 cut(s)	443
AclWI	GGATC	2 cut(s)	440, 453
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	141
AdeI	CACNNNGTG	1 cut(s)	191
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	378, 435
AgsI	TTSAA	1 cut(s)	389
AjiI	CACGTC	1 cut(s)	172
AluBI	AGCT	3 cut(s)	247, 286, 498
AluI	AGCT	3 cut(s)	247, 286, 498
AlwI	GGATC	2 cut(s)	440, 453
AoxI	GGCC	3 cut(s)	8, 332, 369
ApeKI	GCWGC	2 cut(s)	244, 495
ApoI	RAATTY	1 cut(s)	326
Asp700I	GAANNNNTTC	1 cut(s)	393
AspS9I	GGNCC	1 cut(s)	333
AsuHPI	GGTGA	2 cut(s)	265, 389
AsuNHI	GCTAGC	1 cut(s)	439
BamHI	GGATCC	1 cut(s)	445
BauI	CACGAG	1 cut(s)	499
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	5 cut(s)	25, 70, 214, 353, 482
BfaI	CTAG	1 cut(s)	440
BisI	GCNGC	2 cut(s)	245, 496
BlsI	GCNGC	2 cut(s)	246, 497
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	447
BmsI	GCATC	1 cut(s)	331
BmtI	GCTAGC	1 cut(s)	443
BpiI	GAAGAC	1 cut(s)	51
BsaJI	CCNNGG	3 cut(s)	190, 336, 366
Bsc4I	CCNNNNNNNGG	2 cut(s)	378, 435
BseDI	CCNNGG	3 cut(s)	190, 336, 366
BseGI	GGATG	3 cut(s)	225, 346, 352
BseLI	CCNNNNNNNGG	2 cut(s)	378, 435
BseMII	CTCAG	2 cut(s)	78, 81
BseRI	GAGGAG	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	256
BshFI	GGCC	3 cut(s)	10, 334, 371
BslFI	GGGAC	2 cut(s)	158, 311
BslI	CCNNNNNNNGG	2 cut(s)	378, 435
BsmFI	GGGAC	2 cut(s)	158, 311
BsnI	GGCC	3 cut(s)	10, 334, 371
Bsp143I	GATC	1 cut(s)	445
BspACI	CCGC	1 cut(s)	443
BspANI	GGCC	3 cut(s)	10, 334, 371
BspCNI	CTCAG	2 cut(s)	77, 82
BspLI	GGNNCC	1 cut(s)	447
BspOI	GCTAGC	1 cut(s)	443
BspPI	GGATC	2 cut(s)	440, 453
BssECI	CCNNGG	3 cut(s)	190, 336, 366
BssMI	GATC	1 cut(s)	445
BssSI	CACGAG	1 cut(s)	499
BssT1I	CCWWGG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	499
Bst4CI	ACNGT	2 cut(s)	191, 294
BstC8I	GCNNGC	2 cut(s)	104, 441
BstDEI	CTNAG	3 cut(s)	64, 90, 287
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	3 cut(s)	225, 346, 352
BstKTI	GATC	1 cut(s)	448
BstMBI	GATC	1 cut(s)	445
BstNSI	RCATGY	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	3 cut(s)	10, 334, 371
BtgI	CCRYGG	1 cut(s)	190
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	3 cut(s)	225, 346, 352
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	299, 322
Cac8I	GCNNGC	2 cut(s)	104, 441
Cfr13I	GGNCC	1 cut(s)	333
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	5 cut(s)	29, 163, 216, 422, 458
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	3 cut(s)	64, 90, 287
DpnI	GATC	1 cut(s)	447
DpnII	GATC	1 cut(s)	445
DraIII	CACNNNGTG	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	333
EcoRI	GAATTC	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	5 cut(s)	32, 166, 219, 425, 461
FaqI	GGGAC	2 cut(s)	158, 311
FatI	CATG	5 cut(s)	28, 162, 215, 421, 457
FauNDI	CATATG	1 cut(s)	377
Fnu4HI	GCNGC	2 cut(s)	245, 496
FokI	GGATG	3 cut(s)	232, 339, 353
Fsp4HI	GCNGC	2 cut(s)	245, 496
FspBI	CTAG	1 cut(s)	440
GluI	GCNGC	2 cut(s)	245, 496
HaeIII	GGCC	3 cut(s)	10, 334, 371
HgaI	GACGC	1 cut(s)	77
Hin1II	CATG	5 cut(s)	32, 166, 219, 425, 461
HinfI	GANTC	2 cut(s)	53, 470
HphI	GGTGA	2 cut(s)	265, 389
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	3 cut(s)	49, 67, 121
Hpy188III	TCNNGA	2 cut(s)	155, 501
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	2 cut(s)	191, 294
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	265, 454
HpyF3I	CTNAG	3 cut(s)	64, 90, 287
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	5 cut(s)	32, 166, 219, 425, 461
Kzo9I	GATC	1 cut(s)	445
LpnPI	CCDG	2 cut(s)	140, 316
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	447
MboI	GATC	1 cut(s)	445
MboII	GAAGA	3 cut(s)	16, 51, 401
MflI	RGATCY	1 cut(s)	445
MluCI	AATT	4 cut(s)	201, 302, 326, 485
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	9 cut(s)	73, 129, 132, 223, 270, 300, 313, 361, 418
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	2 cut(s)	110, 240
MslI	CAYNNNNRTG	1 cut(s)	420
NdeI	CATATG	1 cut(s)	377
NdeII	GATC	1 cut(s)	445
NheI	GCTAGC	1 cut(s)	439
NlaIII	CATG	5 cut(s)	32, 166, 219, 425, 461
NlaIV	GGNNCC	1 cut(s)	447
NmeAIII	GCCGAG	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	470
PflMI	CCANNNNNTGG	2 cut(s)	378, 435
PkrI	GCNGC	2 cut(s)	246, 497
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	333
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	420
SaqAI	TTAA	2 cut(s)	110, 240
SatI	GCNGC	2 cut(s)	245, 496
Sau3AI	GATC	1 cut(s)	445
Sau96I	GGNCC	1 cut(s)	333
SchI	GAGTC	1 cut(s)	47
SetI	ASST	9 cut(s)	127, 174, 215, 232, 249, 262, 288, 410, 500
SfaNI	GCATC	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	420
Sse9I	AATT	4 cut(s)	201, 302, 326, 485
SsiI	CCGC	1 cut(s)	443
SspI	AATATT	1 cut(s)	280
SspMI	CTAG	1 cut(s)	440
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	191, 294
TaiI	ACGT	1 cut(s)	174
TasI	AATT	4 cut(s)	201, 302, 326, 485
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	2 cut(s)	110, 240
Tru9I	TTAA	2 cut(s)	110, 240
TscAI	CASTG	2 cut(s)	299, 322
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	244, 495
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	17, 179, 341
TspRI	CASTG	2 cut(s)	299, 322
Van91I	CCANNNNNTGG	2 cut(s)	378, 435
XapI	RAATTY	1 cut(s)	326
XceI	RCATGY	1 cut(s)	32
XcmI	CCANNNNNNNNNTGG	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.