Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012911

Physical Location & Seq

Genomic Coordinates Reverse (-)

12306379 .. 12306984

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0080600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTCTAGCTCTGAAAAAAACTATATTGCGTGTAGAGTGTGTGACAGTGTGTTCCTGAGCACCAAAGCCCTCATAAACCACTTAGATACTCACCTGCTGCATGAGGAAGATGCCGCAAGAATCAGGAAACATCTTCAGATTAGTCACCTCATGTCTTTTCAAAGTTCTAATCTATTTTCAAACCCTCCGATCCAACCTGGTCCAGCTACTACTGCTCTTCCTTTCCACCCCTCACCACAAATCCAGCCATATTTCGACCACAGCAGGCAGTTCTACTCACCAGTTCAAGCGCCTCCAGTGCCATATTTACAGAGAAACCCATTTGATGTTCCACCAAATCCAAATCCAAACCCATATCCAAATCCAAATTCATACCCTAATCCACAGGTTTATTCTCCACCGGCAAGAGATTTGCACGCCGGATTTGGATCTGGATTTGGGGCACACTCTTTGTTACCTTCCCAGCAAACGTCACAGCTTATGGCGGCAACGGAGGATTCTCGTGATTTAAGGCCGTTTCTGAGTCTCTTGGATTATCCTATTCCGCAAATGAATATCAATTGTAACGGAAACTCAGATGAGTTGGATTTGACCTTGAAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000419 GO:0000428 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0014070 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030880 GO:0031047 GO:0031050 GO:0031323 GO:0032259 GO:0032991 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0043621 GO:0044030 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdDM_RDM1

Protein Analysis

201

Amino Acids

22.44

Weight (kDa)

6.1

Isoelectric Point (pI)

71.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22680
fragaria_vesca	FvH4_4g00760 FvH4_4g00760 FvH4_5g32450
malus_domestica	MD16G1197500.v1.1
prunus_persica	Prupe.1G018500_v2.0.a1
pyrus_communis	pycom16g16640
rosa_chinensis	RchiOBHm_Chr4g0407591
rosa_laevigata	RLG00000008706 RLG00000010156
rosa_multiflora	Rmu_sc0001942.1_g000058
rosa_roxburghii	Rroxscaffold_5G00352200
rosa_rugosa	Rorug04G0080600 Rorug04G0080700 Rorug04G0080800
rosa_samantha	Rh4AG145400 Rh4CG152100
rosa_wichuraiana	Rw4G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	102
Acc36I	ACCTGC	1 cut(s)	102
AciI	CCGC	3 cut(s)	114, 485, 545
AclWI	GGATC	2 cut(s)	184, 436
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	119
AgsI	TTSAA	4 cut(s)	161, 180, 287, 598
AjnI	CCWGG	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	352, 384
AluBI	AGCT	3 cut(s)	9, 206, 478
AluI	AGCT	3 cut(s)	9, 206, 478
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	2 cut(s)	184, 436
AoxI	GGCC	1 cut(s)	512
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	367
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	4 cut(s)	83, 137, 225, 270
AvaII	GGWCC	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	445
BauI	CACGAG	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	84
BceAI	ACGGC	1 cut(s)	499
BciT130I	CCWGG	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	102
BisI	GCNGC	3 cut(s)	98, 114, 486
BlsI	GCNGC	3 cut(s)	99, 115, 487
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	100
BpmI	CTGGAG	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	56
BsaBI	GATNNNNATC	1 cut(s)	427
Bse118I	RCCGGY	1 cut(s)	400
Bse1I	ACTGG	2 cut(s)	281, 296
Bse8I	GATNNNNATC	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	198
BseJI	GATNNNNATC	1 cut(s)	427
BseMII	CTCAG	3 cut(s)	47, 512, 588
BseNI	ACTGG	2 cut(s)	281, 296
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	1 cut(s)	84
BseYI	CCCAGC	1 cut(s)	462
BshFI	GGCC	1 cut(s)	514
BsiHKAI	GWGCWC	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	401, 420
BsmAI	GTCTC	1 cut(s)	530
BsnI	GGCC	1 cut(s)	514
Bsp1286I	GDGCHC	2 cut(s)	62, 445
Bsp143I	GATC	2 cut(s)	189, 428
BspACI	CCGC	3 cut(s)	114, 485, 545
BspANI	GGCC	1 cut(s)	514
BspCNI	CTCAG	3 cut(s)	48, 513, 587
BspMI	ACCTGC	1 cut(s)	102
BspPI	GGATC	2 cut(s)	184, 436
BspQI	GCTCTTC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	281, 296
BssAI	RCCGGY	1 cut(s)	400
BssMI	GATC	2 cut(s)	189, 428
BssSI	CACGAG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	266, 417
BstDEI	CTNAG	4 cut(s)	56, 82, 521, 574
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	2 cut(s)	192, 431
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	2 cut(s)	189, 428
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 298
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	196
BstSLI	GKGCMC	1 cut(s)	445
BstV1I	GCAGC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
BsuRI	GGCC	1 cut(s)	514
BtsIMutI	CAGTG	2 cut(s)	52, 303
BveI	ACCTGC	1 cut(s)	102
Cac8I	GCNNGC	2 cut(s)	266, 417
CfoI	GCGC	1 cut(s)	292
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	200
CsiI	ACCWGGT	1 cut(s)	196
CviAII	CATG	2 cut(s)	101, 151
CviJI	RGCY	6 cut(s)	9, 68, 206, 247, 478, 514
CviKI_1	RGCY	6 cut(s)	9, 68, 206, 247, 478, 514
DdeI	CTNAG	4 cut(s)	56, 82, 521, 574
DpnI	GATC	2 cut(s)	191, 430
DpnII	GATC	2 cut(s)	189, 428
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	196
FaeI	CATG	2 cut(s)	104, 154
FaiI	YATR	9 cut(s)	24, 74, 102, 152, 250, 304, 355, 373, 482
FatI	CATG	2 cut(s)	100, 150
Fnu4HI	GCNGC	3 cut(s)	98, 114, 486
Fsp4HI	GCNGC	3 cut(s)	98, 114, 486
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	3 cut(s)	98, 114, 486
GsaI	CCCAGC	1 cut(s)	466
GsuI	CTGGAG	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	514
HapII	CCGG	2 cut(s)	401, 420
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	2 cut(s)	104, 154
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HinfI	GANTC	3 cut(s)	120, 497, 523
HpaII	CCGG	2 cut(s)	401, 420
HphI	GGTGA	4 cut(s)	83, 137, 225, 270
Hpy188I	TCNGA	5 cut(s)	13, 138, 189, 522, 577
Hpy188III	TCNNGA	4 cut(s)	55, 124, 432, 503
HpyAV	CCTTC	1 cut(s)	468
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	2 cut(s)	100, 415
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 298
HpyF3I	CTNAG	4 cut(s)	56, 82, 521, 574
HpySE526I	ACGT	1 cut(s)	470
Hsp92II	CATG	2 cut(s)	104, 154
HspAI	GCGC	1 cut(s)	290
Kzo9I	GATC	2 cut(s)	189, 428
LguI	GCTCTTC	1 cut(s)	222
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	1 cut(s)	100
MabI	ACCWGGT	1 cut(s)	196
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	5 cut(s)	41, 143, 453, 471, 563
MalI	GATC	2 cut(s)	191, 430
MboI	GATC	2 cut(s)	189, 428
MboII	GAAGA	3 cut(s)	119, 125, 209
MfeI	CAATTG	1 cut(s)	559
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	2 cut(s)	62, 445
MluCI	AATT	2 cut(s)	367, 559
MlyI	GAGTC	1 cut(s)	532
MmeI	TCCRAC	2 cut(s)	217, 564
MnlI	CCTC	7 cut(s)	80, 97, 158, 195, 241, 303, 487
MseI	TTAA	1 cut(s)	509
MspI	CCGG	2 cut(s)	401, 420
MspR9I	CCNGG	1 cut(s)	198
MunI	CAATTG	1 cut(s)	559
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	2 cut(s)	212, 298
NdeII	GATC	2 cut(s)	189, 428
NlaIII	CATG	2 cut(s)	104, 154
NmuCI	GTSAC	3 cut(s)	41, 143, 471
PaqCI	CACCTGC	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	120, 497
PkrI	GCNGC	3 cut(s)	99, 115, 487
PleI	GAGTC	1 cut(s)	531
PpsI	GAGTC	1 cut(s)	531
Psp6I	CCWGG	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	3 cut(s)	98, 114, 486
Sau3AI	GATC	2 cut(s)	189, 428
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	1 cut(s)	532
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	2 cut(s)	62, 445
SexAI	ACCWGGT	1 cut(s)	196
SfaNI	GCATC	1 cut(s)	100
SinI	GGWCC	1 cut(s)	200
Sse9I	AATT	2 cut(s)	367, 559
SsiI	CCGC	3 cut(s)	114, 485, 545
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	47
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	1 cut(s)	255
TasI	AATT	2 cut(s)	367, 559
TauI	GCSGC	2 cut(s)	116, 488
TfiI	GAWTC	2 cut(s)	120, 497
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	2 cut(s)	52, 303
TseFI	GTSAC	3 cut(s)	41, 143, 471
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	3 cut(s)	41, 143, 471
TspDTI	ATGAA	2 cut(s)	360, 566
TspGWI	ACGGA	2 cut(s)	506, 582
TspRI	CASTG	2 cut(s)	52, 303
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	1 cut(s)	367
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.