Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014252

Physical Location & Seq

Genomic Coordinates Forward (+)

8163941 .. 8166350

Gene Structure 2410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGCAGAAACGGGAGCTTGGGAAATCCGGCGGTAATTCCGGTGGATCTTCGGGTCCACCAGCGAAGAGAGGCCGTCCCTTCGGTAGTACAAGTGCTAACTCAGCTGCTGCTGCTGCAGCGGCGGCAGCAGCGGACGCGATGTCACCGTCAGCTTTACTTGGTCCTTCTCTTCTAGTTCACAATTCCTTCGTCGAGCAGAACAATAGAAGAATAGTTCTTGCGTTGCAGAGTGGTTTGAAGAGTGAGGTGACATGGGCATTGAACACACTTACGTTGCTTTCCTTCAAGGAAAAAGAAGATATTCGAAGAGATGTCATGCCTCTTGCTAAGATAGCTGGCTTGCTTGATGCCCTTCTCTTAATTATAGATGATTGGCGTGACATAGCTCTCCCAAAGGACCTGACAAGAGGAACTAGAGTTAGAACTTTAGGTACAAATGCTTCAGTTACGGGATTTGGCAATGAGTATGATGCTCTAGCCTCTATTCAACCCCCTGGATCCGGGATTGGTTCTTCTGCTGCTGAGGCATTAGGAAAAAAGAGCACTGGTAAACATCAGTCATCTCAGTGGTGGATGGAAGAGGATGGTTTGTTTAATCTAGACGATGAAGGGAGATCAGAGAAACAAATGTGTGCTATTGCTGCATCGAACGTTATCCGCAACTTCTCCTTCATGCCTGATAATGAAGTTGTAATGGCTCAGCATCGCCATTGCTTAGAAACTGTTTTCCAGTGCATACACGATCATATGACCGAGGATGAAGAGCTGGTCACAAACTCGCTAGAGACAATTGTAAACCTAGCGCATTTGATGGATCTTCGAATTTTCAGCTCGCTTAAGCAGTCATACATCAACATAAATGAAAAGAAAGCTGTTCAAGCTGTGGTCGGAATCCTCAATTCTTCTGTCAAAGCTTGGAATTGTGCTGCTGCTGAGTTGCTAGGGCGTTTGATAATCAATCCGGACAATGAACCTTTCATTAGTCCTTTAATTCCGCAGATACACAAGCGACTAATCGATCTTTTGAGCATACAAGCCGTTGATGCACAAGCTGCAGCTGTTGGAGCACTCTACAATCTCGTGGAAGTTAACATGGATTGCAGATTAAAGCTAGCAAGTGAGAGATGGGCGGTTGATAGGTTGCTGAAAGTGATAAAGACTCCGCATCCGGTTCCAGAAGTATGTAGGAAAGCTGCAATGATCCTTGAGAACCTTGTCTCGGAGCCTCAAAACAGAGGATTGCTACTCGCGTATGAGAATGCTTTCGCTGAGCTGCTTTTTCAAGAGGGTAAGTATTCTGATTCATTTGCTAGGATTTTGTATGAACTCACTGCTAGATCTAATAGCAGAGTTGCTTCAGCTAGAGGAATCTGGGGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAF250_C

Protein Analysis

460

Amino Acids

50.11

Weight (kDa)

6.34

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22990
fragaria_vesca	FvH4_4g01960
malus_domestica	MD13G1203000.v1.1 MD16G1218200.v1.1
prunus_persica	Prupe.1G025500_v2.0.a1
pyrus_communis	pycom13g17630 pycom16g17250
rosa_chinensis	RchiOBHm_Chr4g0388931
rosa_laevigata	RLG00000010006
rosa_multiflora	Rmu_sc0005486.1_g000003
rosa_roxburghii	Rroxscaffold_5G00335250
rosa_rugosa	Rorug03G0321400 Rorug03G0321500
rosa_samantha	Rh4AG025800 Rh4BG019100 Rh4DG019600
rosa_wichuraiana	Rw4G001860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	137, 1250
AccIII	TCCGGA	1 cut(s)	961
AciI	CCGC	8 cut(s)	30, 119, 122, 131, 658, 995, 1130, 1163
AclI	AACGTT	1 cut(s)	651
AclWI	GGATC	5 cut(s)	52, 492, 505, 822, 1195
AcsI	RAATTY	1 cut(s)	822
AcuI	CTGAAG	2 cut(s)	426, 1341
AfaI	GTAC	2 cut(s)	88, 433
AfiI	CCNNNNNNNGG	2 cut(s)	500, 1219
AflII	CTTAAG	1 cut(s)	836
AgsI	TTSAA	6 cut(s)	238, 262, 286, 488, 878, 1283
AhdI	GACNNNNNGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	493
Alw21I	GWGCWC	2 cut(s)	545, 1069
Alw26I	GTCTC	2 cut(s)	779, 1222
AlwI	GGATC	5 cut(s)	52, 492, 505, 822, 1195
AlwNI	CAGNNNCTG	1 cut(s)	107
Aor13HI	TCCGGA	1 cut(s)	961
AoxI	GGCC	1 cut(s)	70
ApoI	RAATTY	1 cut(s)	822
Asp700I	GAANNNNTTC	2 cut(s)	300, 1262
AspLEI	GCGC	1 cut(s)	805
AspS9I	GGNCC	3 cut(s)	53, 161, 397
AsuC2I	CCSGG	1 cut(s)	502
AsuHPI	GGTGA	2 cut(s)	135, 259
AsuII	TTCGAA	2 cut(s)	304, 820
AsuNHI	GCTAGC	1 cut(s)	1111
AvaII	GGWCC	3 cut(s)	53, 161, 397
BamHI	GGATCC	1 cut(s)	497
BarI	GAAGNNNNNNTAC	2 cut(s)	424, 456
BauI	CACGAG	1 cut(s)	1079
Bbv12I	GWGCWC	2 cut(s)	545, 1069
BbvCI	CCTCAGC	1 cut(s)	522
BccI	CCATC	4 cut(s)	568, 578, 805, 1119
BceAI	ACGGC	2 cut(s)	57, 1022
BciT130I	CCWGG	1 cut(s)	495
BcnI	CCSGG	1 cut(s)	502
BcoDI	GTCTC	2 cut(s)	779, 1222
BfmI	CTRYAG	2 cut(s)	114, 1053
BfrI	CTTAAG	1 cut(s)	836
BglII	AGATCT	1 cut(s)	1337
BlpI	GCTNAGC	2 cut(s)	699, 1269
Bme1390I	CCNGG	2 cut(s)	495, 502
Bme18I	GGWCC	3 cut(s)	53, 161, 397
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	53, 161, 397
BmiI	GGNNCC	4 cut(s)	54, 499, 1173, 1224
BmrFI	CCNGG	2 cut(s)	495, 502
BmsI	GCATC	6 cut(s)	337, 460, 653, 712, 1033, 1174
BmtI	GCTAGC	1 cut(s)	1115
Bpu10I	CCTNAGC	1 cut(s)	522
Bpu1102I	GCTNAGC	2 cut(s)	699, 1269
Bpu14I	TTCGAA	2 cut(s)	304, 820
BpuEI	CTTGAG	1 cut(s)	1226
BpuMI	CCSGG	1 cut(s)	502
Bsa29I	ATCGAT	1 cut(s)	1017
BsaJI	CCNNGG	2 cut(s)	493, 753
BsaWI	WCCGGW	3 cut(s)	38, 961, 1168
Bsc4I	CCNNNNNNNGG	2 cut(s)	500, 1219
Bse1I	ACTGG	2 cut(s)	550, 730
Bse3DI	GCAATG	3 cut(s)	466, 709, 1203
BseAI	TCCGGA	1 cut(s)	961
BseBI	CCWGG	1 cut(s)	495
BseCI	ATCGAT	1 cut(s)	1017
BseDI	CCNNGG	2 cut(s)	493, 753
BseGI	GGATG	4 cut(s)	579, 589, 763, 1165
BseLI	CCNNNNNNNGG	2 cut(s)	500, 1219
BseMI	GCAATG	3 cut(s)	466, 709, 1203
BseMII	CTCAG	6 cut(s)	114, 513, 578, 713, 924, 1260
BseNI	ACTGG	2 cut(s)	550, 730
Bsh1236I	CGCG	2 cut(s)	137, 1250
BshFI	GGCC	1 cut(s)	72
BshVI	ATCGAT	1 cut(s)	1017
BsiHKAI	GWGCWC	2 cut(s)	545, 1069
BsiSI	CCGG	5 cut(s)	27, 39, 501, 962, 1169
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	500, 1219
BsmAI	GTCTC	2 cut(s)	779, 1222
BsmFI	GGGAC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	1264
BsnI	GGCC	1 cut(s)	72
Bsp119I	TTCGAA	2 cut(s)	304, 820
Bsp1286I	GDGCHC	2 cut(s)	545, 1069
Bsp13I	TCCGGA	1 cut(s)	961
Bsp143I	GATC	8 cut(s)	44, 497, 614, 742, 814, 1018, 1200, 1337
Bsp1720I	GCTNAGC	2 cut(s)	699, 1269
BspACI	CCGC	8 cut(s)	30, 119, 122, 131, 658, 995, 1130, 1163
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	6 cut(s)	113, 514, 577, 712, 925, 1261
BspDI	ATCGAT	1 cut(s)	1017
BspEI	TCCGGA	1 cut(s)	961
BspFNI	CGCG	2 cut(s)	137, 1250
BspLI	GGNNCC	4 cut(s)	54, 499, 1173, 1224
BspMAI	CTGCAG	2 cut(s)	118, 1057
BspOI	GCTAGC	1 cut(s)	1115
BspPI	GGATC	5 cut(s)	52, 492, 505, 822, 1195
BspQI	GCTCTTC	1 cut(s)	756
BspT104I	TTCGAA	2 cut(s)	304, 820
BspTI	CTTAAG	1 cut(s)	836
BsrDI	GCAATG	3 cut(s)	466, 709, 1203
BsrI	ACTGG	2 cut(s)	550, 730
BssECI	CCNNGG	2 cut(s)	493, 753
BssMI	GATC	8 cut(s)	44, 497, 614, 742, 814, 1018, 1200, 1337
BssSI	CACGAG	1 cut(s)	1079
Bst2BI	CACGAG	1 cut(s)	1079
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	2 cut(s)	147, 724
Bst6I	CTCTTC	6 cut(s)	59, 174, 233, 301, 573, 756
BstAFI	CTTAAG	1 cut(s)	836
BstAPI	GCANNNNNTGC	1 cut(s)	1052
BstBI	TTCGAA	2 cut(s)	304, 820
BstC8I	GCNNGC	4 cut(s)	337, 341, 833, 1113
BstDEI	CTNAG	8 cut(s)	100, 327, 522, 564, 699, 715, 933, 1269
BstF5I	GGATG	4 cut(s)	579, 589, 763, 1165
BstFNI	CGCG	2 cut(s)	137, 1250
BstHHI	GCGC	1 cut(s)	805
BstKTI	GATC	8 cut(s)	47, 500, 617, 745, 817, 1021, 1203, 1340
BstMAI	GTCTC	2 cut(s)	779, 1222
BstMBI	GATC	8 cut(s)	44, 497, 614, 742, 814, 1018, 1200, 1337
BstNI	CCWGG	1 cut(s)	495
BstNSI	RCATGY	1 cut(s)	1381
BstSCI	CCNGG	2 cut(s)	493, 500
BstSFI	CTRYAG	2 cut(s)	114, 1053
BstUI	CGCG	2 cut(s)	137, 1250
BstX2I	RGATCY	4 cut(s)	44, 497, 814, 1337
BstYI	RGATCY	4 cut(s)	44, 497, 814, 1337
Bsu15I	ATCGAT	1 cut(s)	1017
BsuRI	GGCC	1 cut(s)	72
BsuTUI	ATCGAT	1 cut(s)	1017
BtgZI	GCGATG	2 cut(s)	152, 689
BtsCI	GGATG	4 cut(s)	579, 589, 763, 1165
BtsI	GCAGTG	1 cut(s)	1329
BtsIMutI	CAGTG	4 cut(s)	543, 572, 737, 1329
Cac8I	GCNNGC	4 cut(s)	337, 341, 833, 1113
CaiI	CAGNNNCTG	1 cut(s)	107
CfoI	GCGC	1 cut(s)	805
Cfr13I	GGNCC	3 cut(s)	53, 161, 397
ClaI	ATCGAT	1 cut(s)	1017
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	87, 432
CviAII	CATG	5 cut(s)	252, 316, 673, 1093, 1378
CviQI	GTAC	2 cut(s)	87, 432
DdeI	CTNAG	8 cut(s)	100, 327, 522, 564, 699, 715, 933, 1269
DpnI	GATC	8 cut(s)	46, 499, 616, 744, 816, 1020, 1202, 1339
DpnII	GATC	8 cut(s)	44, 497, 614, 742, 814, 1018, 1200, 1337
DriI	GACNNNNNGTC	1 cut(s)	139
Eam1104I	CTCTTC	6 cut(s)	59, 174, 233, 301, 573, 756
Eam1105I	GACNNNNNGTC	1 cut(s)	139
EarI	CTCTTC	6 cut(s)	59, 174, 233, 301, 573, 756
Eco47I	GGWCC	3 cut(s)	53, 161, 397
Eco57I	CTGAAG	2 cut(s)	426, 1341
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	493
FaeI	CATG	5 cut(s)	255, 319, 676, 1096, 1381
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	5 cut(s)	251, 315, 672, 1092, 1377
FauNDI	CATATG	1 cut(s)	747
FokI	GGATG	4 cut(s)	586, 596, 770, 1152
GlaI	GCGC	1 cut(s)	804
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	5 cut(s)	27, 39, 501, 962, 1169
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	805
Hin1II	CATG	5 cut(s)	255, 319, 676, 1096, 1381
Hin6I	GCGC	1 cut(s)	803
HinP1I	GCGC	1 cut(s)	803
HincII	GTYRAC	1 cut(s)	1090
HindII	GTYRAC	1 cut(s)	1090
HindIII	AAGCTT	1 cut(s)	912
HinfI	GANTC	4 cut(s)	891, 1159, 1301, 1368
HpaI	GTTAAC	1 cut(s)	1090
HpaII	CCGG	5 cut(s)	27, 39, 501, 962, 1169
HphI	GGTGA	2 cut(s)	135, 259
Hpy166II	GTNNAC	5 cut(s)	56, 178, 551, 796, 1090
Hpy188I	TCNGA	4 cut(s)	619, 890, 1222, 1300
Hpy188III	TCNNGA	4 cut(s)	599, 962, 1175, 1283
Hpy8I	GTNNAC	5 cut(s)	56, 178, 551, 796, 1090
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	7 cut(s)	88, 174, 196, 292, 362, 602, 679
HpyCH4III	ACNGT	2 cut(s)	147, 724
HpyCH4IV	ACGT	2 cut(s)	272, 651
HpyCH4V	TGCA	9 cut(s)	4, 116, 226, 644, 735, 1046, 1055, 1101, 1196
HpyF3I	CTNAG	8 cut(s)	100, 327, 522, 564, 699, 715, 933, 1269
HpySE526I	ACGT	2 cut(s)	272, 651
Hsp92II	CATG	5 cut(s)	255, 319, 676, 1096, 1381
HspAI	GCGC	1 cut(s)	803
Kpn2I	TCCGGA	1 cut(s)	961
KspAI	GTTAAC	1 cut(s)	1090
Kzo9I	GATC	8 cut(s)	44, 497, 614, 742, 814, 1018, 1200, 1337
LguI	GCTCTTC	1 cut(s)	756
LmnI	GCTCC	3 cut(s)	13, 1064, 1222
LweI	GCATC	6 cut(s)	337, 460, 653, 712, 1033, 1174
MaeII	ACGT	2 cut(s)	272, 651
MaeIII	GTNAC	5 cut(s)	141, 247, 377, 445, 769
MalI	GATC	8 cut(s)	46, 499, 616, 744, 816, 1020, 1202, 1339
MboI	GATC	8 cut(s)	44, 497, 614, 742, 814, 1018, 1200, 1337
MfeI	CAATTG	1 cut(s)	789
MflI	RGATCY	4 cut(s)	44, 497, 814, 1337
MhlI	GDGCHC	2 cut(s)	545, 1069
MluCI	AATT	8 cut(s)	34, 181, 360, 789, 822, 898, 919, 990
MlyI	GAGTC	1 cut(s)	1153
MmeI	TCCRAC	2 cut(s)	868, 1042
MroI	TCCGGA	1 cut(s)	961
MroXI	GAANNNNTTC	2 cut(s)	300, 1262
MseI	TTAA	6 cut(s)	359, 594, 837, 989, 1089, 1106
MslI	CAYNNNNRTG	1 cut(s)	565
MspA1I	CMGCKG	4 cut(s)	104, 119, 131, 1058
MspCI	CTTAAG	1 cut(s)	836
MspI	CCGG	5 cut(s)	27, 39, 501, 962, 1169
MspR9I	CCNGG	2 cut(s)	495, 502
MunI	CAATTG	1 cut(s)	789
Mva1269I	GAATGC	1 cut(s)	1264
MvaI	CCWGG	1 cut(s)	495
MvnI	CGCG	2 cut(s)	137, 1250
NciI	CCSGG	1 cut(s)	502
NdeI	CATATG	1 cut(s)	747
NdeII	GATC	8 cut(s)	44, 497, 614, 742, 814, 1018, 1200, 1337
NheI	GCTAGC	1 cut(s)	1111
NlaIII	CATG	5 cut(s)	255, 319, 676, 1096, 1381
NlaIV	GGNNCC	4 cut(s)	54, 499, 1173, 1224
NmuCI	GTSAC	4 cut(s)	141, 247, 377, 769
NspI	RCATGY	1 cut(s)	1381
NspV	TTCGAA	2 cut(s)	304, 820
PciSI	GCTCTTC	1 cut(s)	756
PctI	GAATGC	1 cut(s)	1264
PdmI	GAANNNNTTC	2 cut(s)	300, 1262
PfeI	GAWTC	3 cut(s)	891, 1301, 1368
PfoI	TCCNGGA	1 cut(s)	500
PleI	GAGTC	1 cut(s)	1153
PpsI	GAGTC	1 cut(s)	1153
PpuMI	RGGWCCY	1 cut(s)	397
Psp1406I	AACGTT	1 cut(s)	651
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	4 cut(s)	54, 499, 1173, 1224
PspPI	GGNCC	3 cut(s)	53, 161, 397
PspPPI	RGGWCCY	1 cut(s)	397
PsrI	GAACNNNNNNTAC	2 cut(s)	415, 447
PstI	CTGCAG	2 cut(s)	118, 1057
PstNI	CAGNNNCTG	1 cut(s)	107
PsuI	RGATCY	4 cut(s)	44, 497, 814, 1337
PvuII	CAGCTG	2 cut(s)	104, 1058
RsaI	GTAC	2 cut(s)	88, 433
RsaNI	GTAC	2 cut(s)	87, 432
RseI	CAYNNNNRTG	1 cut(s)	565
SapI	GCTCTTC	1 cut(s)	756
SaqAI	TTAA	6 cut(s)	359, 594, 837, 989, 1089, 1106
Sau3AI	GATC	8 cut(s)	44, 497, 614, 742, 814, 1018, 1200, 1337
Sau96I	GGNCC	3 cut(s)	53, 161, 397
SchI	GAGTC	1 cut(s)	1153
ScrFI	CCNGG	2 cut(s)	495, 502
SduI	GDGCHC	2 cut(s)	545, 1069
SfaNI	GCATC	6 cut(s)	337, 460, 653, 712, 1033, 1174
SfcI	CTRYAG	2 cut(s)	114, 1053
SfuI	TTCGAA	2 cut(s)	304, 820
SinI	GGWCC	3 cut(s)	53, 161, 397
SmiMI	CAYNNNNRTG	1 cut(s)	565
SmlI	CTYRAG	2 cut(s)	836, 1205
SmoI	CTYRAG	2 cut(s)	836, 1205
Sse9I	AATT	8 cut(s)	34, 181, 360, 789, 822, 898, 919, 990
SsiI	CCGC	8 cut(s)	30, 119, 122, 131, 658, 995, 1130, 1163
StyD4I	CCNGG	2 cut(s)	493, 500
TaaI	ACNGT	2 cut(s)	147, 724
TaiI	ACGT	2 cut(s)	275, 654
TaqI	TCGA	5 cut(s)	192, 304, 647, 820, 1017
TaqII	GACCGA	1 cut(s)	767
TasI	AATT	8 cut(s)	34, 181, 360, 789, 822, 898, 919, 990
TatI	WGTACW	1 cut(s)	86
TauI	GCSGC	2 cut(s)	122, 125
TfiI	GAWTC	3 cut(s)	891, 1301, 1368
Tru1I	TTAA	6 cut(s)	359, 594, 837, 989, 1089, 1106
Tru9I	TTAA	6 cut(s)	359, 594, 837, 989, 1089, 1106
TscAI	CASTG	4 cut(s)	550, 572, 737, 1336
TseFI	GTSAC	4 cut(s)	141, 247, 377, 769
Tsp45I	GTSAC	4 cut(s)	141, 247, 377, 769
TspDTI	ATGAA	9 cut(s)	621, 661, 699, 774, 876, 967, 984, 1293, 1338
TspRI	CASTG	4 cut(s)	550, 572, 737, 1336
Vha464I	CTTAAG	1 cut(s)	836
VpaK11BI	GGWCC	3 cut(s)	53, 161, 397
XapI	RAATTY	1 cut(s)	822
XbaI	TCTAGA	1 cut(s)	598
XceI	RCATGY	1 cut(s)	1381
XmnI	GAANNNNTTC	2 cut(s)	300, 1262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.