Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0014252

Physical Location & Seq

Genomic Coordinates Forward (+)

34804735 .. 34805829

Gene Structure 1095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0321400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGTTAACGTCAAAGGAGGCATATAATTCCCTTCTCCCTCTTCCTCCCTCTGTGGAGTGGGGCACCATCATATGGCATCCGGCTATCCAGCCTCGTAAGAGCATTTGTACTTGGAAAATTCTTCACCGTAAAGTTTTAACTGATGAAGCTCTTCAGCGTCGCGGGGTGCACCTTTGTTCTAAATGTAGCCTGTGTGGTGCGGGTGGAGAGTCTTGGGTTCACCTCTTCTGGGAGTGTAGAGTCATCTCGGACCTTTTGCAGTGGTTATTTCAAATGTTCAAGTTGGCTCCCCTCCAGCAAACTTCTCTACCTGACCTTGTCTCTAATGCTTTTCTTTCAAGATTTGTTAAATCGCCGAGGCTTCTTTGGCGTATTGCTTTCTGCAATCTGCTTTGGTGTGTTTGGTCTGAACATAATACAATGCGGCATGAGACAGGTTCCTTTTCTTTGGCTAACCTCAAGCATTTTTTTATTTTATCACTAAAGGAGTCTGCTGGGCTAGTGTTTGCCTCATCTAATTCCTCTTCCTCTATGCCCATTTTTGAGTTGTTGAGAATTTCTCAACTTAGACCAACAGCCCCTCGGTTTATTGATGTGTGTTGGTCGCCTCCACCGCTTCCTTGGTTAAAAATAAACACTGATGGTTCATTTCGTGGACCAGAGCTTGCCGGTTTTGGGGGGATTGTTCGAGACTATGAAGGTGGTTTCATTTATGCTTTCGCATATAGAGTGAGAGTTTCTAGTGCCTTAGATGCTGAAGTGCTTGCATTCCTTGAGGCTATTAAGGTTGCCAAGCTAAGGGAGTGGCAATACCTTTGGATAGAGTCAGATTCTTTGGCGGTGGTAAGGTATTTTGCTAATCCTGCTCTAGTTCCCTGGAGGCTACGTATCAAGTGGTTGAATGGCATGGCAGTTGTGCGTCATTTGAACATAAAGGTTACACATATCTTTCGTGAAGGAAACGTTCCGGCTGACGTGTTGGCAAACTTCGGCGCGGCACATGAGGAGAGTCATGGTTGGCATTCTCTCCCCCAGTTCTTGGTCCCTTCTTTTGGACGGGACTTCACCTCTCAAGGGGATTATAGATTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAF250_C

Protein Analysis

364

Amino Acids

41.64

Weight (kDa)

9.31

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	3 - 82	7.1e-18	zinc-binding in reverse transcriptase
RVT_3	PF13456	212 - 330	2.7e-15	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22990
fragaria_vesca	FvH4_4g01960
malus_domestica	MD13G1203000.v1.1 MD16G1218200.v1.1
prunus_persica	Prupe.1G025500_v2.0.a1
pyrus_communis	pycom13g17630 pycom16g17250
rosa_chinensis	RchiOBHm_Chr4g0388931
rosa_laevigata	RLG00000010006
rosa_multiflora	Rmu_sc0005486.1_g000003
rosa_roxburghii	Rroxscaffold_5G00335250
rosa_rugosa	Rorug03G0321400 Rorug03G0321500
rosa_samantha	Rh4AG025800 Rh4BG019100 Rh4DG019600
rosa_wichuraiana	Rw4G001860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AccB7I	CCANNNNNTGG	2 cut(s)	72, 1039
AccII	CGCG	2 cut(s)	162, 995
AciI	CCGC	6 cut(s)	162, 200, 424, 614, 839, 995
AclI	AACGTT	1 cut(s)	963
AcsI	RAATTY	2 cut(s)	117, 555
AcuI	CTGAAG	2 cut(s)	137, 777
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	7 cut(s)	72, 229, 675, 798, 1039, 1052, 1074
AflIII	ACRYGT	1 cut(s)	975
AgsI	TTSAA	5 cut(s)	272, 280, 339, 901, 928
AjiI	CACGTC	1 cut(s)	976
AjnI	CCWGG	1 cut(s)	875
AluBI	AGCT	3 cut(s)	149, 664, 796
AluI	AGCT	3 cut(s)	149, 664, 796
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	3 cut(s)	325, 425, 684
Alw44I	GTGCAC	1 cut(s)	167
ApaLI	GTGCAC	1 cut(s)	167
ApoI	RAATTY	2 cut(s)	117, 555
Asp700I	GAANNNNTTC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	995
AspS9I	GGNCC	3 cut(s)	250, 656, 1042
AsuHPI	GGTGA	3 cut(s)	116, 212, 1057
AvaII	GGWCC	3 cut(s)	250, 656, 1042
BaeGI	GKGCMC	2 cut(s)	65, 171
BanI	GGYRCC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	171
BccI	CCATC	2 cut(s)	74, 635
BciT130I	CCWGG	1 cut(s)	877
BcoDI	GTCTC	3 cut(s)	325, 425, 684
BfaI	CTAG	3 cut(s)	500, 741, 869
BisI	GCNGC	2 cut(s)	425, 996
BlsI	GCNGC	2 cut(s)	426, 997
Bme1390I	CCNGG	1 cut(s)	877
Bme18I	GGWCC	3 cut(s)	250, 656, 1042
BmgBI	CACGTC	1 cut(s)	976
BmgT120I	GGNCC	3 cut(s)	250, 656, 1042
BmiI	GGNNCC	4 cut(s)	64, 288, 439, 1044
BmrFI	CCNGG	1 cut(s)	877
BmrI	ACTGGG	1 cut(s)	1027
BmsI	GCATC	2 cut(s)	85, 742
BmuI	ACTGGG	1 cut(s)	1027
BplI	GAGNNNNNCTC	2 cut(s)	544, 576
BpmI	CTGGAG	2 cut(s)	278, 898
Bpu10I	CCTNAGC	1 cut(s)	797
BpuEI	CTTGAG	3 cut(s)	443, 794, 1056
BsaAI	YACGTR	1 cut(s)	887
BsaJI	CCNNGG	4 cut(s)	356, 581, 620, 875
BsaXI	ACNNNNNCTCC	2 cut(s)	871, 901
Bsc4I	CCNNNNNNNGG	7 cut(s)	72, 229, 675, 798, 1039, 1052, 1074
Bse118I	RCCGGY	1 cut(s)	668
Bse1I	ACTGG	1 cut(s)	1033
BseBI	CCWGG	1 cut(s)	877
BseDI	CCNNGG	4 cut(s)	356, 581, 620, 875
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	7 cut(s)	72, 229, 675, 798, 1039, 1052, 1074
BseNI	ACTGG	1 cut(s)	1033
BseRI	GAGGAG	1 cut(s)	1019
BseSI	GKGCMC	2 cut(s)	65, 171
BseYI	CCCAGC	1 cut(s)	494
Bsh1236I	CGCG	2 cut(s)	162, 995
BshNI	GGYRCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	3 cut(s)	80, 669, 968
BslFI	GGGAC	2 cut(s)	1028, 1073
BslI	CCNNNNNNNGG	7 cut(s)	72, 229, 675, 798, 1039, 1052, 1074
BsmAI	GTCTC	3 cut(s)	325, 425, 684
BsmFI	GGGAC	2 cut(s)	1028, 1073
BsmI	GAATGC	2 cut(s)	767, 1021
Bsp1286I	GDGCHC	2 cut(s)	65, 171
BspACI	CCGC	6 cut(s)	162, 200, 424, 614, 839, 995
BspFNI	CGCG	2 cut(s)	162, 995
BspLI	GGNNCC	4 cut(s)	64, 288, 439, 1044
BspQI	GCTCTTC	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	668
BsrI	ACTGG	1 cut(s)	1033
BssAI	RCCGGY	1 cut(s)	668
BssECI	CCNNGG	4 cut(s)	356, 581, 620, 875
BssT1I	CCWWGG	1 cut(s)	620
Bst2UI	CCWGG	1 cut(s)	877
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	4 cut(s)	45, 156, 230, 529
BstBAI	YACGTR	1 cut(s)	887
BstC8I	GCNNGC	2 cut(s)	666, 765
BstDEI	CTNAG	3 cut(s)	566, 748, 797
BstF5I	GGATG	1 cut(s)	76
BstFNI	CGCG	2 cut(s)	162, 995
BstHHI	GCGC	1 cut(s)	995
BstMAI	GTCTC	3 cut(s)	325, 425, 684
BstMWI	GCNNNNNNNGC	4 cut(s)	367, 613, 752, 863
BstNI	CCWGG	1 cut(s)	877
BstSCI	CCNGG	1 cut(s)	875
BstSLI	GKGCMC	2 cut(s)	65, 171
BstSNI	TACGTA	1 cut(s)	887
BstUI	CGCG	2 cut(s)	162, 995
BtrI	CACGTC	1 cut(s)	976
BtsCI	GGATG	1 cut(s)	76
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	2 cut(s)	266, 636
Cac8I	GCNNGC	2 cut(s)	666, 765
CfoI	GCGC	1 cut(s)	995
Cfr10I	RCCGGY	1 cut(s)	668
Cfr13I	GGNCC	3 cut(s)	250, 656, 1042
CseI	GACGC	2 cut(s)	146, 908
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	4 cut(s)	428, 907, 1001, 1013
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	3 cut(s)	566, 748, 797
Eam1104I	CTCTTC	4 cut(s)	45, 156, 230, 529
EarI	CTCTTC	4 cut(s)	45, 156, 230, 529
Eco105I	TACGTA	1 cut(s)	887
Eco130I	CCWWGG	1 cut(s)	620
Eco47I	GGWCC	3 cut(s)	250, 656, 1042
Eco57I	CTGAAG	2 cut(s)	137, 777
EcoRII	CCWGG	1 cut(s)	875
EcoT14I	CCWWGG	1 cut(s)	620
ErhI	CCWWGG	1 cut(s)	620
FaeI	CATG	4 cut(s)	431, 910, 1004, 1016
FaqI	GGGAC	2 cut(s)	1028, 1073
FatI	CATG	4 cut(s)	427, 906, 1000, 1012
FauI	CCCGC	2 cut(s)	155, 193
FauNDI	CATATG	1 cut(s)	71
Fnu4HI	GCNGC	2 cut(s)	425, 996
FokI	GGATG	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	425, 996
FspBI	CTAG	3 cut(s)	500, 741, 869
GlaI	GCGC	1 cut(s)	994
GluI	GCNGC	2 cut(s)	425, 996
GsaI	CCCAGC	1 cut(s)	498
GsuI	CTGGAG	2 cut(s)	278, 898
HapII	CCGG	3 cut(s)	80, 669, 968
HgaI	GACGC	2 cut(s)	146, 908
HhaI	GCGC	1 cut(s)	995
Hin1II	CATG	4 cut(s)	431, 910, 1004, 1016
Hin6I	GCGC	1 cut(s)	993
HinP1I	GCGC	1 cut(s)	993
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	7 cut(s)	209, 240, 488, 824, 830, 1009, 1086
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	3 cut(s)	80, 669, 968
HphI	GGTGA	3 cut(s)	116, 212, 1057
Hpy166II	GTNNAC	4 cut(s)	6, 169, 220, 656
Hpy188I	TCNGA	4 cut(s)	250, 409, 829, 1091
Hpy188III	TCNNGA	3 cut(s)	339, 689, 953
Hpy8I	GTNNAC	4 cut(s)	6, 169, 220, 656
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	4 cut(s)	41, 692, 950, 1056
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	4 cut(s)	8, 886, 963, 975
HpyCH4V	TGCA	4 cut(s)	169, 259, 384, 767
HpyF10VI	GCNNNNNNNGC	4 cut(s)	367, 613, 752, 863
HpyF3I	CTNAG	3 cut(s)	566, 748, 797
HpySE526I	ACGT	4 cut(s)	8, 886, 963, 975
Hsp92II	CATG	4 cut(s)	431, 910, 1004, 1016
HspAI	GCGC	1 cut(s)	993
KspAI	GTTAAC	1 cut(s)	6
LguI	GCTCTTC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	292
LweI	GCATC	2 cut(s)	85, 742
MaeI	CTAG	3 cut(s)	500, 741, 869
MaeII	ACGT	4 cut(s)	8, 886, 963, 975
MaeIII	GTNAC	1 cut(s)	937
MboII	GAAGA	5 cut(s)	32, 113, 143, 217, 516
MhlI	GDGCHC	2 cut(s)	65, 171
MluCI	AATT	4 cut(s)	25, 117, 517, 555
MlyI	GAGTC	5 cut(s)	218, 249, 497, 833, 1018
MroXI	GAANNNNTTC	1 cut(s)	150
MseI	TTAA	5 cut(s)	5, 137, 348, 626, 783
MspI	CCGG	3 cut(s)	80, 669, 968
MspR9I	CCNGG	1 cut(s)	877
Mva1269I	GAATGC	2 cut(s)	767, 1021
MvaI	CCWGG	1 cut(s)	877
MvnI	CGCG	2 cut(s)	162, 995
MwoI	GCNNNNNNNGC	4 cut(s)	367, 613, 752, 863
NdeI	CATATG	1 cut(s)	71
NlaIII	CATG	4 cut(s)	431, 910, 1004, 1016
NlaIV	GGNNCC	4 cut(s)	64, 288, 439, 1044
NmeAIII	GCCGAG	1 cut(s)	381
PciSI	GCTCTTC	1 cut(s)	156
PctI	GAATGC	2 cut(s)	767, 1021
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	830, 1086
PflFI	GACNNNGTC	1 cut(s)	317
PflMI	CCANNNNNTGG	2 cut(s)	72, 1039
PkrI	GCNGC	2 cut(s)	426, 997
PleI	GAGTC	5 cut(s)	217, 248, 496, 832, 1017
PpsI	GAGTC	5 cut(s)	217, 248, 496, 832, 1017
Ppu21I	YACGTR	1 cut(s)	887
Psp1406I	AACGTT	1 cut(s)	963
Psp6I	CCWGG	1 cut(s)	875
PspFI	CCCAGC	1 cut(s)	494
PspGI	CCWGG	1 cut(s)	875
PspN4I	GGNNCC	4 cut(s)	64, 288, 439, 1044
PspPI	GGNCC	3 cut(s)	250, 656, 1042
PsyI	GACNNNGTC	1 cut(s)	317
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	5 cut(s)	5, 137, 348, 626, 783
SatI	GCNGC	2 cut(s)	425, 996
Sau96I	GGNCC	3 cut(s)	250, 656, 1042
SchI	GAGTC	5 cut(s)	218, 249, 497, 833, 1018
ScrFI	CCNGG	1 cut(s)	877
SduI	GDGCHC	2 cut(s)	65, 171
SfaNI	GCATC	2 cut(s)	85, 742
SinI	GGWCC	3 cut(s)	250, 656, 1042
SmlI	CTYRAG	3 cut(s)	458, 773, 1071
SmoI	CTYRAG	3 cut(s)	458, 773, 1071
SnaBI	TACGTA	1 cut(s)	887
Sse9I	AATT	4 cut(s)	25, 117, 517, 555
SsiI	CCGC	6 cut(s)	162, 200, 424, 614, 839, 995
SspMI	CTAG	3 cut(s)	500, 741, 869
StyD4I	CCNGG	1 cut(s)	875
StyI	CCWWGG	1 cut(s)	620
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	4 cut(s)	11, 889, 966, 978
TaqI	TCGA	1 cut(s)	688
TasI	AATT	4 cut(s)	25, 117, 517, 555
TatI	WGTACW	1 cut(s)	107
TauI	GCSGC	2 cut(s)	427, 998
TfiI	GAWTC	2 cut(s)	830, 1086
Tru1I	TTAA	5 cut(s)	5, 137, 348, 626, 783
Tru9I	TTAA	5 cut(s)	5, 137, 348, 626, 783
TscAI	CASTG	2 cut(s)	266, 643
TspDTI	ATGAA	4 cut(s)	159, 636, 697, 711
TspRI	CASTG	2 cut(s)	266, 643
Tth111I	GACNNNGTC	1 cut(s)	317
Van91I	CCANNNNNTGG	2 cut(s)	72, 1039
VneI	GTGCAC	1 cut(s)	167
VpaK11BI	GGWCC	3 cut(s)	250, 656, 1042
XapI	RAATTY	2 cut(s)	117, 555
XcmI	CCANNNNNNNNNTGG	1 cut(s)	618
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	3 cut(s)	500, 741, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.