Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Forward (+)

34842454 .. 34854341

Gene Structure 11888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0321500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGATGAATTCCAGGGGTTTGTTTGTTGCTCTTATTCATCACCATCGTAAGCTTTCGACGTCCAATTTCTTTGCCGCCCCAAGCCATCATTATCATTTTATTCAACACCGCCTTCTCCACTCATCACCATCCCCAAACCTACTCGTTAAAGCCTTCGCGATAAAGGAAGATTATGATTTGGAAGTTAAAAGAGTTCAAGATCAATTGTTGCCAGCAATTTTCTGCGTCACTACATACTCTGAGCCCTTGTGTTTTTATGTAGCTAGACACCTTAGGAACATGAATCACCGATTCCCAAATGTAGCAATATCTGAATTCGTTCTTGATGCTAAGGCCGACAACTATAAAAGCACACTGAAATCTCTTGGTATTTCCTATACGCCAAGCTTCCATTTTTTTAAGAATGGAAAAAAGGTAAATAAGGTAGGTCTTAAGAGGCTCAGAACGGATGCTGAGGCTTATGTCGAATGCTTGAAAAGGATTGTTGAACAACTCTATAACTTTCAACCTACAAAGAGTTCATCTAGCAGGGAGAACAAGAGAACTACTGAAGGAAGTGATGTAGAACGTCCTAAAAAAGGTTTTGCAAGCTGTGAGCTCATTCTATCAAAGGAGGAATATAATTTGGCTGTTAACAGAATTCAAGATGAATCTGTGCCAGCAGTTTTGTACTTCGCTACCTATTCTGAGTTCACCAGTACCATGGTATATGAGTTTCTTCACGAGGATTTGAGTGAGCGATTCCCACATGTAGCAATCTACGAGTTCCTCCTTGATCCTAAGGAAGACGACTACGAAACAACACTGAAAAGTCTAAATATTTCCTCTATTGTCAATGCGCCGATATTCCATTTCTTTAAAAATGGGAAAAAGGTAGATGAGCTAGCCTATGAGAGATTTGTTGAACTTTATCAGTATGGCAGAGACTTGGAAAAGATTCTTGAGAAACTATACAACACTCAACCTGCAATAAGTTCATCTGGAACTGGGAGAAAAACTACTCAAGAATTACAACCTGTGAAAGATAAGGATAGCAAAGGAGTTAGAGGGCAGCGAGGGAGGAAAGTGAGGGATGCCGCAATGATTTCCAAACAGACACAGAGTGGGGGCAATCATCAGTTTGTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

376

Amino Acids

43.35

Weight (kDa)

9.12

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	973
AccII	CGCG	1 cut(s)	158
AciI	CCGC	3 cut(s)	75, 109, 1077
AclWI	GGATC	1 cut(s)	770
AcsI	RAATTY	3 cut(s)	7, 314, 639
AcuI	CTGAAG	1 cut(s)	570
AcyI	GRCGYC	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	1103
AfaI	GTAC	2 cut(s)	671, 700
AfiI	CCNNNNNNNGG	1 cut(s)	578
AflII	CTTAAG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	748
AgsI	TTSAA	7 cut(s)	104, 197, 475, 488, 506, 644, 905
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	6 cut(s)	52, 263, 387, 591, 598, 883
AluI	AGCT	6 cut(s)	52, 263, 387, 591, 598, 883
Alw21I	GWGCWC	1 cut(s)	600
Alw26I	GTCTC	1 cut(s)	918
AlwI	GGATC	1 cut(s)	770
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	1 cut(s)	1051
ApoI	RAATTY	3 cut(s)	7, 314, 639
Asp700I	GAANNNNTTC	2 cut(s)	318, 936
AspLEI	GCGC	1 cut(s)	841
AsuHPI	GGTGA	4 cut(s)	32, 117, 278, 685
AsuNHI	GCTAGC	1 cut(s)	883
AxyI	CCTNAGG	2 cut(s)	272, 780
BanII	GRGCYC	2 cut(s)	246, 600
BauI	CACGAG	1 cut(s)	722
BbsI	GAAGAC	1 cut(s)	792
Bbv12I	GWGCWC	1 cut(s)	600
BbvCI	CCTCAGC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	1063
BccI	CCATC	3 cut(s)	51, 93, 136
BciT130I	CCWGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	918
BfaI	CTAG	3 cut(s)	264, 525, 884
BfrI	CTTAAG	1 cut(s)	431
BfuAI	ACCTGC	1 cut(s)	973
BisI	GCNGC	3 cut(s)	75, 1052, 1077
BlsI	GCNGC	3 cut(s)	76, 1053, 1078
Bme1390I	CCNGG	1 cut(s)	13
BmrFI	CCNGG	1 cut(s)	13
BmrI	ACTGGG	1 cut(s)	996
BmsI	GCATC	3 cut(s)	316, 439, 1063
BmtI	GCTAGC	1 cut(s)	887
BmuI	ACTGGG	1 cut(s)	996
BpiI	GAAGAC	1 cut(s)	792
Bpu10I	CCTNAGC	2 cut(s)	330, 453
BpuEI	CTTGAG	2 cut(s)	962, 987
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	12, 702
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse1I	ACTGG	2 cut(s)	696, 991
Bse21I	CCTNAGG	2 cut(s)	272, 780
Bse3DI	GCAATG	1 cut(s)	1086
BseBI	CCWGG	1 cut(s)	13
BseDI	CCNNGG	2 cut(s)	12, 702
BseGI	GGATG	3 cut(s)	128, 454, 1078
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMI	GCAATG	1 cut(s)	1086
BseMII	CTCAG	4 cut(s)	231, 444, 454, 678
BseNI	ACTGG	2 cut(s)	696, 991
BseXI	GCAGC	1 cut(s)	1063
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	600
BslI	CCNNNNNNNGG	1 cut(s)	578
BsmAI	GTCTC	1 cut(s)	918
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	335
Bsp1286I	GDGCHC	2 cut(s)	246, 600
Bsp143I	GATC	2 cut(s)	199, 775
Bsp19I	CCATGG	1 cut(s)	702
Bsp68I	TCGCGA	1 cut(s)	158
BspACI	CCGC	3 cut(s)	75, 109, 1077
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	4 cut(s)	232, 445, 453, 679
BspFNI	CGCG	1 cut(s)	158
BspMI	ACCTGC	1 cut(s)	973
BspOI	GCTAGC	1 cut(s)	887
BspPI	GGATC	1 cut(s)	770
BspTI	CTTAAG	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	1086
BsrI	ACTGG	2 cut(s)	696, 991
BssECI	CCNNGG	2 cut(s)	12, 702
BssMI	GATC	2 cut(s)	199, 775
BssNI	GRCGYC	1 cut(s)	59
BssSI	CACGAG	1 cut(s)	722
BssT1I	CCWWGG	1 cut(s)	702
Bst2BI	CACGAG	1 cut(s)	722
Bst2UI	CCWGG	1 cut(s)	13
BstACI	GRCGYC	1 cut(s)	59
BstAFI	CTTAAG	1 cut(s)	431
BstC8I	GCNNGC	4 cut(s)	213, 589, 660, 885
BstDEI	CTNAG	7 cut(s)	240, 272, 330, 440, 453, 687, 780
BstDSI	CCRYGG	1 cut(s)	702
BstENI	CCTNNNNNAGG	1 cut(s)	576
BstF5I	GGATG	3 cut(s)	128, 454, 1078
BstFNI	CGCG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	841
BstKTI	GATC	2 cut(s)	202, 778
BstMAI	GTCTC	1 cut(s)	918
BstMBI	GATC	2 cut(s)	199, 775
BstNI	CCWGG	1 cut(s)	13
BstNSI	RCATGY	1 cut(s)	752
BstSCI	CCNGG	1 cut(s)	11
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	1063
BstV2I	GAAGAC	1 cut(s)	792
BstXI	CCANNNNNNTGG	1 cut(s)	703
Bsu36I	CCTNAGG	2 cut(s)	272, 780
BsuRI	GGCC	1 cut(s)	335
BtgI	CCRYGG	1 cut(s)	702
BtsCI	GGATG	3 cut(s)	128, 454, 1078
BtsIMutI	CAGTG	2 cut(s)	353, 803
BtuMI	TCGCGA	1 cut(s)	158
BveI	ACCTGC	1 cut(s)	973
Cac8I	GCNNGC	4 cut(s)	213, 589, 660, 885
CfoI	GCGC	1 cut(s)	841
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	670, 699
CviAII	CATG	3 cut(s)	280, 703, 749
CviQI	GTAC	2 cut(s)	670, 699
DdeI	CTNAG	7 cut(s)	240, 272, 330, 440, 453, 687, 780
DpnI	GATC	2 cut(s)	201, 777
DpnII	GATC	2 cut(s)	199, 775
DraI	TTTAAA	1 cut(s)	859
DraIII	CACNNNGTG	1 cut(s)	1103
Ecl136II	GAGCTC	1 cut(s)	598
Eco130I	CCWWGG	1 cut(s)	702
Eco24I	GRGCYC	2 cut(s)	246, 600
Eco53kI	GAGCTC	1 cut(s)	598
Eco57I	CTGAAG	1 cut(s)	570
Eco81I	CCTNAGG	2 cut(s)	272, 780
EcoICRI	GAGCTC	1 cut(s)	598
EcoNI	CCTNNNNNAGG	1 cut(s)	576
EcoRI	GAATTC	3 cut(s)	7, 314, 639
EcoRII	CCWGG	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	702
EcoT38I	GRGCYC	2 cut(s)	246, 600
ErhI	CCWWGG	1 cut(s)	702
FaeI	CATG	3 cut(s)	283, 706, 752
FatI	CATG	3 cut(s)	279, 702, 748
Fnu4HI	GCNGC	3 cut(s)	75, 1052, 1077
FokI	GGATG	3 cut(s)	115, 461, 1085
FriOI	GRGCYC	2 cut(s)	246, 600
Fsp4HI	GCNGC	3 cut(s)	75, 1052, 1077
FspBI	CTAG	3 cut(s)	264, 525, 884
GlaI	GCGC	1 cut(s)	840
GluI	GCNGC	3 cut(s)	75, 1052, 1077
HaeIII	GGCC	1 cut(s)	335
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	1 cut(s)	841
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	3 cut(s)	283, 706, 752
Hin6I	GCGC	1 cut(s)	839
HinP1I	GCGC	1 cut(s)	839
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	2 cut(s)	50, 385
HinfI	GANTC	5 cut(s)	283, 291, 650, 741, 937
HpaI	GTTAAC	1 cut(s)	634
HphI	GGTGA	4 cut(s)	32, 117, 278, 685
Hpy166II	GTNNAC	2 cut(s)	634, 693
Hpy188I	TCNGA	4 cut(s)	241, 313, 443, 688
Hpy188III	TCNNGA	8 cut(s)	157, 197, 323, 644, 722, 941, 981, 1004
Hpy8I	GTNNAC	2 cut(s)	634, 693
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	122, 163, 545
HpyCH4IV	ACGT	2 cut(s)	59, 568
HpyCH4V	TGCA	2 cut(s)	587, 968
HpyF3I	CTNAG	7 cut(s)	240, 272, 330, 440, 453, 687, 780
HpySE526I	ACGT	2 cut(s)	59, 568
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	3 cut(s)	283, 706, 752
HspAI	GCGC	1 cut(s)	839
KspAI	GTTAAC	1 cut(s)	634
Kzo9I	GATC	2 cut(s)	199, 775
LpnPI	CCDG	9 cut(s)	25, 225, 514, 672, 709, 966, 972, 978, 1029
Lsp1109I	GCAGC	1 cut(s)	1063
LweI	GCATC	3 cut(s)	316, 439, 1063
MaeI	CTAG	3 cut(s)	264, 525, 884
MaeII	ACGT	2 cut(s)	59, 568
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	201, 777
MboI	GATC	2 cut(s)	199, 775
MboII	GAAGA	3 cut(s)	179, 710, 797
MfeI	CAATTG	1 cut(s)	203
MhlI	GDGCHC	2 cut(s)	246, 600
MluCI	AATT	9 cut(s)	7, 64, 203, 216, 314, 622, 639, 1007, 1126
MroXI	GAANNNNTTC	2 cut(s)	318, 936
MseI	TTAA	7 cut(s)	147, 186, 399, 432, 633, 858, 1129
MspCI	CTTAAG	1 cut(s)	431
MspR9I	CCNGG	1 cut(s)	13
MunI	CAATTG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	13
MvnI	CGCG	1 cut(s)	158
NcoI	CCATGG	1 cut(s)	702
NdeII	GATC	2 cut(s)	199, 775
NheI	GCTAGC	1 cut(s)	883
NlaIII	CATG	3 cut(s)	283, 706, 752
NmuCI	GTSAC	1 cut(s)	226
NruI	TCGCGA	1 cut(s)	158
NspI	RCATGY	1 cut(s)	752
PciI	ACATGT	1 cut(s)	748
PctI	GAATGC	1 cut(s)	473
PdmI	GAANNNNTTC	2 cut(s)	318, 936
PfeI	GAWTC	5 cut(s)	283, 291, 650, 741, 937
PkrI	GCNGC	3 cut(s)	76, 1053, 1078
PscI	ACATGT	1 cut(s)	748
Psp124BI	GAGCTC	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	11
RruI	TCGCGA	1 cut(s)	158
RsaI	GTAC	2 cut(s)	671, 700
RsaNI	GTAC	2 cut(s)	670, 699
SacI	GAGCTC	1 cut(s)	600
SaqAI	TTAA	7 cut(s)	147, 186, 399, 432, 633, 858, 1129
SatI	GCNGC	3 cut(s)	75, 1052, 1077
Sau3AI	GATC	2 cut(s)	199, 775
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	2 cut(s)	246, 600
SfaNI	GCATC	3 cut(s)	316, 439, 1063
SmlI	CTYRAG	3 cut(s)	431, 941, 1002
SmoI	CTYRAG	3 cut(s)	431, 941, 1002
Sse9I	AATT	9 cut(s)	7, 64, 203, 216, 314, 622, 639, 1007, 1126
SsiI	CCGC	3 cut(s)	75, 109, 1077
SspI	AATATT	1 cut(s)	820
SspMI	CTAG	3 cut(s)	264, 525, 884
SstI	GAGCTC	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	702
TaiI	ACGT	2 cut(s)	62, 571
TaqI	TCGA	2 cut(s)	56, 465
TasI	AATT	9 cut(s)	7, 64, 203, 216, 314, 622, 639, 1007, 1126
TatI	WGTACW	1 cut(s)	669
TauI	GCSGC	2 cut(s)	77, 1079
TfiI	GAWTC	5 cut(s)	283, 291, 650, 741, 937
Tru1I	TTAA	7 cut(s)	147, 186, 399, 432, 633, 858, 1129
Tru9I	TTAA	7 cut(s)	147, 186, 399, 432, 633, 858, 1129
TscAI	CASTG	2 cut(s)	360, 810
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	1051
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	6 cut(s)	20, 26, 296, 510, 663, 966
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	2 cut(s)	360, 810
Vha464I	CTTAAG	1 cut(s)	431
XagI	CCTNNNNNAGG	1 cut(s)	576
XapI	RAATTY	3 cut(s)	7, 314, 639
XceI	RCATGY	1 cut(s)	752
XmnI	GAANNNNTTC	2 cut(s)	318, 936
XspI	CTAG	3 cut(s)	264, 525, 884
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.