Rh3CG318800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000788
Physical Location & Seq
Reverse (-)
34137330 .. 34138105
776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG318800.1

Sequence Viewer

Length: 351 bp
ATGGCTTCTTCGTCGTTGAGATCTTCATTGACGATAACGGCAGCGGCCGTTGTGAACAATGGCAGAGCTGGAAGGTTCGAGAAGCAGCAACTCCACCCCGCTCGGCAAACGACTTTGTCTGTTCGATTCAAGCCGGCGTCTTCCTCGACTTTATGGATGAAAGAGGAGGCGGCGCCACTGGCGAGCGTGGGTGATTCCTGTGAGGAGGGGTTACAAGATCGGAAAGCGCCACACCATGCATTGCAAGGTCACCGGAAAGTGTGGCTCTGTTATCATGGGGATGGTGCTTGCTCCTCGTGGTTCTGGGGGTCTACCAAGACTCTTGAAACTTTGTCAAGGAATAATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.71

Weight (kDa)

9.25

Isoelectric Point (pI)

60.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 172
AccBSI CCGCTC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 311
AciI CCGC 3 cut(s) 44, 99, 170
AcoI YGGCCR 1 cut(s) 45
AcyI GRCGYC 2 cut(s) 137, 173
AgsI TTSAA 2 cut(s) 130, 326
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 41, 85
AspLEI GCGC 2 cut(s) 175, 229
AsuHPI GGTGA 2 cut(s) 203, 242
BanI GGYRCC 1 cut(s) 172
BauI CACGAG 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 53, 97
BccI CCATC 1 cut(s) 275
BceAI ACGGC 2 cut(s) 32, 54
BfoI RGCGCY 2 cut(s) 176, 230
BglII AGATCT 1 cut(s) 20
BisI GCNGC 4 cut(s) 42, 45, 86, 171
BlsI GCNGC 4 cut(s) 43, 46, 87, 172
BmiI GGNNCC 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 132
BsaHI GRCGYC 2 cut(s) 137, 173
BsaWI WCCGGW 1 cut(s) 252
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 239
BseGI GGATG 2 cut(s) 162, 286
BseMI GCAATG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 183
BseRI GAGGAG 3 cut(s) 179, 218, 283
BseX3I CGGCCG 1 cut(s) 45
BseXI GCAGC 2 cut(s) 53, 97
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 172
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 2 cut(s) 134, 253
BsnI GGCC 1 cut(s) 47
Bsp143I GATC 2 cut(s) 20, 217
BspACI CCGC 3 cut(s) 44, 99, 170
BspANI GGCC 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 172
BsrBI CCGCTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 1 cut(s) 183
BssAI RCCGGY 1 cut(s) 133
BssMI GATC 2 cut(s) 20, 217
BssNI GRCGYC 2 cut(s) 137, 173
BssSI CACGAG 1 cut(s) 295
Bst2BI CACGAG 1 cut(s) 295
BstACI GRCGYC 2 cut(s) 137, 173
BstC8I GCNNGC 3 cut(s) 135, 184, 289
BstEII GGTNACC 1 cut(s) 248
BstF5I GGATG 2 cut(s) 162, 286
BstH2I RGCGCY 2 cut(s) 176, 230
BstHHI GCGC 2 cut(s) 175, 229
BstKTI GATC 2 cut(s) 23, 220
BstMBI GATC 2 cut(s) 20, 217
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstPI GGTNACC 1 cut(s) 248
BstV1I GCAGC 2 cut(s) 53, 97
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BstZI CGGCCG 1 cut(s) 45
BsuRI GGCC 1 cut(s) 47
BtsCI GGATG 2 cut(s) 162, 286
BtsIMutI CAGTG 1 cut(s) 176
Cac8I GCNNGC 3 cut(s) 135, 184, 289
CfoI GCGC 2 cut(s) 175, 229
Cfr10I RCCGGY 1 cut(s) 133
CseI GACGC 1 cut(s) 126
CviAII CATG 2 cut(s) 236, 275
CviJI RGCY 5 cut(s) 5, 47, 68, 133, 265
CviKI_1 RGCY 5 cut(s) 5, 47, 68, 133, 265
DinI GGCGCC 1 cut(s) 174
DpnI GATC 2 cut(s) 22, 219
DpnII GATC 2 cut(s) 20, 217
EaeI YGGCCR 1 cut(s) 45
EagI CGGCCG 1 cut(s) 45
EclXI CGGCCG 1 cut(s) 45
Eco52I CGGCCG 1 cut(s) 45
Eco91I GGTNACC 1 cut(s) 248
EcoO65I GGTNACC 1 cut(s) 248
EcoT22I ATGCAT 1 cut(s) 241
EgeI GGCGCC 1 cut(s) 174
EheI GGCGCC 1 cut(s) 174
FaeI CATG 2 cut(s) 239, 278
FaiI YATR 3 cut(s) 154, 237, 276
FatI CATG 2 cut(s) 235, 274
FauI CCCGC 1 cut(s) 106
FblI GTMKAC 1 cut(s) 311
Fnu4HI GCNGC 4 cut(s) 42, 45, 86, 171
FokI GGATG 2 cut(s) 169, 293
Fsp4HI GCNGC 4 cut(s) 42, 45, 86, 171
GlaI GCGC 2 cut(s) 174, 228
GluI GCNGC 4 cut(s) 42, 45, 86, 171
HaeII RGCGCY 2 cut(s) 176, 230
HaeIII GGCC 1 cut(s) 47
HapII CCGG 2 cut(s) 134, 253
HgaI GACGC 1 cut(s) 126
HhaI GCGC 2 cut(s) 175, 229
Hin1I GRCGYC 2 cut(s) 137, 173
Hin1II CATG 2 cut(s) 239, 278
Hin6I GCGC 2 cut(s) 173, 227
HinP1I GCGC 2 cut(s) 173, 227
HinfI GANTC 3 cut(s) 126, 194, 319
HpaII CCGG 2 cut(s) 134, 253
HphI GGTGA 2 cut(s) 203, 242
Hpy166II GTNNAC 2 cut(s) 55, 312
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 2 cut(s) 79, 323
Hpy8I GTNNAC 2 cut(s) 55, 312
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 239, 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
Hsp92I GRCGYC 2 cut(s) 137, 173
Hsp92II CATG 2 cut(s) 239, 278
HspAI GCGC 2 cut(s) 173, 227
KasI GGCGCC 1 cut(s) 172
KroI GCCGGC 1 cut(s) 133
KroNI GCCGGC 1 cut(s) 135
Kzo9I GATC 2 cut(s) 20, 217
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 6 cut(s) 54, 147, 164, 211, 266, 289
Lsp1109I GCAGC 2 cut(s) 53, 97
MaeIII GTNAC 2 cut(s) 210, 248
MalI GATC 2 cut(s) 22, 219
MbiI CCGCTC 1 cut(s) 101
MboI GATC 2 cut(s) 20, 217
MboII GAAGA 2 cut(s) 15, 132
MflI RGATCY 1 cut(s) 20
Mly113I GGCGCC 1 cut(s) 173
MlyI GAGTC 1 cut(s) 313
MnlI CCTC 6 cut(s) 154, 157, 160, 196, 199, 304
Mph1103I ATGCAT 1 cut(s) 241
MroNI GCCGGC 1 cut(s) 133
MslI CAYNNNNRTG 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 2 cut(s) 134, 253
MwoI GCNNNNNNNGC 1 cut(s) 179
NaeI GCCGGC 1 cut(s) 135
NarI GGCGCC 1 cut(s) 173
NdeII GATC 2 cut(s) 20, 217
NgoMIV GCCGGC 1 cut(s) 133
NlaIII CATG 2 cut(s) 239, 278
NlaIV GGNNCC 1 cut(s) 174
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 248
NsiI ATGCAT 1 cut(s) 241
PdiI GCCGGC 1 cut(s) 135
PfeI GAWTC 2 cut(s) 126, 194
PflFI GACNNNGTC 1 cut(s) 115
PkrI GCNGC 4 cut(s) 43, 46, 87, 172
PleI GAGTC 1 cut(s) 313
PluTI GGCGCC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 313
PspEI GGTNACC 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 174
PsuI RGATCY 1 cut(s) 20
PsyI GACNNNGTC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 279
SatI GCNGC 4 cut(s) 42, 45, 86, 171
Sau3AI GATC 2 cut(s) 20, 217
SchI GAGTC 1 cut(s) 313
SetI ASST 3 cut(s) 70, 77, 250
SfoI GGCGCC 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 279
SsiI CCGC 3 cut(s) 44, 99, 170
SspDI GGCGCC 1 cut(s) 172
TaqI TCGA 3 cut(s) 78, 124, 146
TauI GCSGC 2 cut(s) 47, 173
TfiI GAWTC 2 cut(s) 126, 194
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 2 cut(s) 41, 85
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 2 cut(s) 15, 173
TspRI CASTG 1 cut(s) 183
Tth111I GACNNNGTC 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 311
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.