Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Forward (+)

25152902 .. 25155615

Gene Structure 2714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG241800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGATTGAGCTATTTAAAGTAAAGGAAAAGCAGAGGGAGCTTGCTGAAAATGCCAATGGAAAGTCACTGGTTAAGAAGCAAAGTTCTGGAGAATTACAAAGAAAAATATGGCACAGCATTGCCCCTGAGCATCGGCCTTTACCTAGACGCCTTAATAGCCACAAGGTAGATATTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

59

Amino Acids

6.91

Weight (kDa)

10.2

Isoelectric Point (pI)

53.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	148
AluBI	AGCT	2 cut(s)	10, 40
AluI	AGCT	2 cut(s)	10, 40
AoxI	GGCC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	126
BsaHI	GRCGYC	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	136
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	72
BssNI	GRCGYC	1 cut(s)	148
BstACI	GRCGYC	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 50, 156
BsuRI	GGCC	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	42
CseI	GACGC	1 cut(s)	156
CviJI	RGCY	4 cut(s)	10, 40, 136, 159
CviKI_1	RGCY	4 cut(s)	10, 40, 136, 159
DdeI	CTNAG	1 cut(s)	126
DraI	TTTAAA	1 cut(s)	16
FaiI	YATR	3 cut(s)	109, 176, 178
FspBI	CTAG	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	136
HgaI	GACGC	1 cut(s)	156
Hin1I	GRCGYC	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 50, 156
HpyF3I	CTNAG	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	3 cut(s)	53, 72, 138
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	63
MluCI	AATT	1 cut(s)	92
MnlI	CCTC	1 cut(s)	27
MseI	TTAA	3 cut(s)	15, 72, 153
MwoI	GCNNNNNNNGC	3 cut(s)	37, 50, 156
NmuCI	GTSAC	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	15, 72, 153
SetI	ASST	4 cut(s)	12, 42, 145, 168
SfaNI	GCATC	1 cut(s)	139
SgeI	CNNG	6 cut(s)	53, 80, 99, 137, 156, 175
Sse9I	AATT	1 cut(s)	92
SspMI	CTAG	1 cut(s)	144
TasI	AATT	1 cut(s)	92
Tru1I	TTAA	3 cut(s)	15, 72, 153
Tru9I	TTAA	3 cut(s)	15, 72, 153
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	63
Tsp45I	GTSAC	1 cut(s)	63
TspRI	CASTG	1 cut(s)	72
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.