Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006440.1

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Forward (+)

41570 .. 45963

Gene Structure 4394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006440.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgcctactcgtgtaatttatgatacctacactactagaaatatggccaaagggcaccgatggatggccactgataagcaaacgggtgagccgatctacaaaacccacatgaccataggacgggaaattagccaacgcgccatcaccaatggtttgctgacttcaacagctgccgattgtgtgctgcaaaagggttccacctttcttgactctgaatcttgttctaggtttttctcagatacagcaagagtaggaggcttaggtggagtattgatcacttcggcctgggatcaaaaatggcgtcacggtgctggccgctgtgatgaggaggagaaattggtcccagtgaccaagcttggccatctcgtcaaggacaacaagatctcatctctggagcagatctacctccactcgctcccaatcaaggagcaccagatcatcgacactctcaatgatgtccacaacattgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

157

Amino Acids

17.61

Weight (kDa)

7.78

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	54
AccII	CGCG	1 cut(s)	138
AciI	CCGC	1 cut(s)	316
AclWI	GGATC	1 cut(s)	297
AcoI	YGGCCR	4 cut(s)	45, 66, 313, 358
AcyI	GRCGYC	1 cut(s)	301
AfiI	CCNNNNNNNGG	3 cut(s)	64, 120, 424
AgsI	TTSAA	1 cut(s)	165
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	2 cut(s)	170, 355
AluI	AGCT	2 cut(s)	170, 355
Alw21I	GWGCWC	1 cut(s)	432
AlwI	GGATC	1 cut(s)	297
AoxI	GGCC	5 cut(s)	45, 66, 282, 313, 358
ApeKI	GCWGC	2 cut(s)	170, 184
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	340
AsuHPI	GGTGA	2 cut(s)	98, 136
AvaII	GGWCC	1 cut(s)	340
BaeGI	GKGCMC	1 cut(s)	57
BalI	TGGCCA	3 cut(s)	47, 68, 360
BanI	GGYRCC	1 cut(s)	54
BauI	CACGAG	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	157, 171
BccI	CCATC	4 cut(s)	54, 58, 149, 369
BciT130I	CCWGG	1 cut(s)	286
BclI	TGATCA	1 cut(s)	273
BfaI	CTAG	2 cut(s)	36, 225
BglII	AGATCT	2 cut(s)	381, 399
BisI	GCNGC	3 cut(s)	171, 185, 316
BlsI	GCNGC	3 cut(s)	172, 186, 317
Bme1390I	CCNGG	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	3 cut(s)	56, 196, 342
BmrFI	CCNGG	1 cut(s)	286
BmrI	ACTGGG	1 cut(s)	338
BmuI	ACTGGG	1 cut(s)	338
BpmI	CTGGAG	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	259
BsaHI	GRCGYC	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 120, 424
Bse1I	ACTGG	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	3 cut(s)	64, 120, 424
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	344
BseRI	GAGGAG	2 cut(s)	341, 344
BseSI	GKGCMC	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	157, 171
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	5 cut(s)	47, 68, 284, 315, 360
BshNI	GGYRCC	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	3 cut(s)	64, 120, 424
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	5 cut(s)	47, 68, 284, 315, 360
Bsp1286I	GDGCHC	2 cut(s)	57, 432
Bsp143I	GATC	6 cut(s)	93, 273, 289, 381, 399, 435
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	5 cut(s)	47, 68, 284, 315, 360
BspCNI	CTCAG	1 cut(s)	248
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	3 cut(s)	56, 196, 342
BspPI	GGATC	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	6 cut(s)	93, 273, 289, 381, 399, 435
BssNI	GRCGYC	1 cut(s)	301
BssSI	CACGAG	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	308
BstACI	GRCGYC	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	2 cut(s)	235, 259
BstF5I	GGATG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	6 cut(s)	96, 276, 292, 384, 402, 438
BstMBI	GATC	6 cut(s)	93, 273, 289, 381, 399, 435
BstNI	CCWGG	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	284
BstSLI	GKGCMC	1 cut(s)	57
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	157, 171
BstX2I	RGATCY	2 cut(s)	381, 399
BstYI	RGATCY	2 cut(s)	381, 399
BsuRI	GGCC	5 cut(s)	47, 68, 284, 315, 360
BtsCI	GGATG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	69, 351
Cac8I	GCNNGC	1 cut(s)	313
CfoI	GCGC	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	340
CseI	GACGC	1 cut(s)	290
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	1 cut(s)	109
DdeI	CTNAG	2 cut(s)	235, 259
DpnI	GATC	6 cut(s)	95, 275, 291, 383, 401, 437
DpnII	GATC	6 cut(s)	93, 273, 289, 381, 399, 435
EaeI	YGGCCR	4 cut(s)	45, 66, 313, 358
Eco47I	GGWCC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	284
FaeI	CATG	1 cut(s)	112
FaiI	YATR	4 cut(s)	21, 44, 110, 116
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	171, 185, 316
FokI	GGATG	1 cut(s)	76
Fsp4HI	GCNGC	3 cut(s)	171, 185, 316
FspBI	CTAG	2 cut(s)	36, 225
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	3 cut(s)	171, 185, 316
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	5 cut(s)	47, 68, 284, 315, 360
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	301
Hin1II	CATG	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	2 cut(s)	209, 215
HphI	GGTGA	2 cut(s)	98, 136
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	2 cut(s)	214, 238
Hpy188III	TCNNGA	2 cut(s)	206, 392
Hpy8I	GTNNAC	1 cut(s)	460
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4V	TGCA	1 cut(s)	187
HpyF3I	CTNAG	2 cut(s)	235, 259
Hsp92I	GRCGYC	1 cut(s)	301
Hsp92II	CATG	1 cut(s)	112
HspAI	GCGC	1 cut(s)	138
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	6 cut(s)	93, 273, 289, 381, 399, 435
LmnI	GCTCC	3 cut(s)	394, 420, 427
LpnPI	CCDG	6 cut(s)	271, 297, 298, 357, 377, 446
Lsp1109I	GCAGC	2 cut(s)	157, 171
MaeI	CTAG	2 cut(s)	36, 225
MaeIII	GTNAC	2 cut(s)	302, 346
MalI	GATC	6 cut(s)	95, 275, 291, 383, 401, 437
MboI	GATC	6 cut(s)	93, 273, 289, 381, 399, 435
MflI	RGATCY	2 cut(s)	381, 399
MhlI	GDGCHC	2 cut(s)	57, 432
MlsI	TGGCCA	3 cut(s)	47, 68, 360
MluCI	AATT	3 cut(s)	15, 126, 335
MluNI	TGGCCA	3 cut(s)	47, 68, 360
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	4 cut(s)	248, 319, 322, 416
Mox20I	TGGCCA	3 cut(s)	47, 68, 360
MscI	TGGCCA	3 cut(s)	47, 68, 360
Msp20I	TGGCCA	3 cut(s)	47, 68, 360
MspA1I	CMGCKG	2 cut(s)	170, 318
MspR9I	CCNGG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	286
MvnI	CGCG	1 cut(s)	138
NdeII	GATC	6 cut(s)	93, 273, 289, 381, 399, 435
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	3 cut(s)	56, 196, 342
NmuCI	GTSAC	2 cut(s)	302, 346
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	172, 186, 317
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	3 cut(s)	56, 196, 342
PspPI	GGNCC	1 cut(s)	340
PsuI	RGATCY	2 cut(s)	381, 399
PvuII	CAGCTG	1 cut(s)	170
SatI	GCNGC	3 cut(s)	171, 185, 316
Sau3AI	GATC	6 cut(s)	93, 273, 289, 381, 399, 435
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	2 cut(s)	57, 432
SetI	ASST	7 cut(s)	29, 172, 203, 230, 265, 357, 408
SinI	GGWCC	1 cut(s)	340
Sse9I	AATT	3 cut(s)	15, 126, 335
SsiI	CCGC	1 cut(s)	316
SspMI	CTAG	2 cut(s)	36, 225
StyD4I	CCNGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	308
TaqI	TCGA	1 cut(s)	441
TasI	AATT	3 cut(s)	15, 126, 335
TauI	GCSGC	1 cut(s)	318
TfiI	GAWTC	1 cut(s)	215
TscAI	CASTG	2 cut(s)	76, 351
TseFI	GTSAC	2 cut(s)	302, 346
TseI	GCWGC	2 cut(s)	170, 184
Tsp45I	GTSAC	2 cut(s)	302, 346
TspRI	CASTG	2 cut(s)	76, 351
VpaK11BI	GGWCC	1 cut(s)	340
XspI	CTAG	2 cut(s)	36, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.