Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Reverse (-)

24584621 .. 24588035

Gene Structure 3415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG236500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGATGAAAGCGGAGGCGGCGCCACTGGCGAGCGTGGAGGCTTCGGCAGCGGAATCGGAGGCTTCAAGGTCTTTGTCGTCGGCGACAGCAAAAGCCATGTCGGACTCGGCGTCAAGTGCAGCAAGGAGGTTGCTACTGCTATTCGTGGAGCCATTATTGTGGCTAAGCTGTGGGTGATTCCTGTGAGGAGGGGTTACAAGATCGGAAAGCCCCACACCAAGCATTGCAAGGTCACCGGAAAGCGTGGCTCTGTTATAGTGGGGTGGCTAGGGTTCCCAAGAAGGTGTTCCAATTTGCTGGTATTGATGATGTGTTCACTTCATCCAGGGGGTCTACCAAGACTCTCGAAACTTTGTCAAGGAATAATGATTGAGCTATTTAAAGTGAAGGAAAAGCAGAGGGAGCTTGCTGAAAATGCCAATGGAAAGTCACCGGTTAAGAAGCAAAGTTCTGGAGAATTACATAGGTATGCCATGTTAAAGTTTTACATATCTGCATATCTGTTACGTTTAAGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

173

Amino Acids

18.74

Weight (kDa)

10.2

Isoelectric Point (pI)

26.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	24 - 63	2.1e-12	Ribosomal protein S5, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	334
AciI	CCGC	3 cut(s)	12, 18, 51
AcyI	GRCGYC	2 cut(s)	21, 111
AgeI	ACCGGT	1 cut(s)	433
AgsI	TTSAA	1 cut(s)	67
AhdI	GACNNNNNGTC	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	325
AjuI	GAANNNNNNNTTGG	2 cut(s)	271, 303
AluBI	AGCT	3 cut(s)	169, 376, 406
AluI	AGCT	3 cut(s)	169, 376, 406
ApeKI	GCWGC	2 cut(s)	48, 120
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
AsiGI	ACCGGT	1 cut(s)	433
Asp700I	GAANNNNTTC	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	23
AsuHPI	GGTGA	3 cut(s)	187, 226, 423
BanI	GGYRCC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	60, 132
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	1 cut(s)	327
BfaI	CTAG	1 cut(s)	269
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	3 cut(s)	19, 49, 121
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	3 cut(s)	20, 50, 122
Bme1390I	CCNGG	1 cut(s)	327
BmeRI	GACNNNNNGTC	1 cut(s)	110
BmiI	GGNNCC	3 cut(s)	22, 151, 275
BmrFI	CCNGG	1 cut(s)	327
BpmI	CTGGAG	1 cut(s)	474
Bpu1102I	GCTNAGC	1 cut(s)	165
BsaHI	GRCGYC	2 cut(s)	21, 111
BsaJI	CCNNGG	1 cut(s)	326
BsaWI	WCCGGW	2 cut(s)	236, 433
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	2 cut(s)	10, 322
BseMI	GCAATG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	60, 132
BsgI	GTGCAG	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	20
BshTI	ACCGGT	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	237, 434
Bsp143I	GATC	1 cut(s)	201
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	3 cut(s)	12, 18, 51
BspLI	GGNNCC	3 cut(s)	22, 151, 275
BspT107I	GGYRCC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	433
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	1 cut(s)	201
BssNI	GRCGYC	2 cut(s)	21, 111
Bst2UI	CCWGG	1 cut(s)	327
BstACI	GRCGYC	2 cut(s)	21, 111
BstC8I	GCNNGC	2 cut(s)	32, 408
BstDEI	CTNAG	1 cut(s)	165
BstEII	GGTNACC	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	10, 322
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	6 cut(s)	18, 27, 48, 117, 403, 416
BstNI	CCWGG	1 cut(s)	327
BstPI	GGTNACC	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	325
BstV1I	GCAGC	2 cut(s)	60, 132
BstXI	CCANNNNNNTGG	2 cut(s)	160, 298
BtsCI	GGATG	2 cut(s)	10, 322
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	2 cut(s)	32, 408
CfoI	GCGC	1 cut(s)	23
Cfr10I	RCCGGY	1 cut(s)	433
CseI	GACGC	1 cut(s)	100
CspAI	ACCGGT	1 cut(s)	433
CviAII	CATG	2 cut(s)	98, 475
DdeI	CTNAG	1 cut(s)	165
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
DraI	TTTAAA	1 cut(s)	382
DriI	GACNNNNNGTC	1 cut(s)	110
Eam1105I	GACNNNNNGTC	1 cut(s)	110
Eco91I	GGTNACC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	325
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
FaeI	CATG	2 cut(s)	101, 478
FaiI	YATR	7 cut(s)	99, 257, 465, 471, 476, 491, 499
FatI	CATG	2 cut(s)	97, 474
FblI	GTMKAC	1 cut(s)	334
Fnu4HI	GCNGC	3 cut(s)	19, 49, 121
FokI	GGATG	2 cut(s)	17, 309
Fsp4HI	GCNGC	3 cut(s)	19, 49, 121
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	3 cut(s)	19, 49, 121
GsuI	CTGGAG	1 cut(s)	474
HaeII	RGCGCY	1 cut(s)	24
HapII	CCGG	2 cut(s)	237, 434
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	2 cut(s)	21, 111
Hin1II	CATG	2 cut(s)	101, 478
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HinfI	GANTC	4 cut(s)	54, 105, 178, 342
HpaII	CCGG	2 cut(s)	237, 434
HphI	GGTGA	3 cut(s)	187, 226, 423
Hpy166II	GTNNAC	2 cut(s)	317, 335
Hpy188I	TCNGA	3 cut(s)	59, 104, 206
Hpy188III	TCNNGA	2 cut(s)	346, 453
Hpy8I	GTNNAC	2 cut(s)	317, 335
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	276, 382
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	3 cut(s)	120, 228, 497
HpyF10VI	GCNNNNNNNGC	6 cut(s)	18, 27, 48, 117, 403, 416
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	508
Hsp92I	GRCGYC	2 cut(s)	21, 111
Hsp92II	CATG	2 cut(s)	101, 478
HspAI	GCGC	1 cut(s)	21
KasI	GGCGCC	1 cut(s)	20
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	2 cut(s)	149, 403
LpnPI	CCDG	8 cut(s)	12, 195, 250, 284, 312, 339, 438, 447
Lsp1109I	GCAGC	2 cut(s)	60, 132
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	4 cut(s)	194, 232, 429, 504
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MluCI	AATT	2 cut(s)	292, 458
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	2 cut(s)	99, 336
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	7 cut(s)	8, 32, 53, 121, 180, 183, 393
MroXI	GAANNNNTTC	1 cut(s)	286
MseI	TTAA	4 cut(s)	381, 438, 479, 512
MslI	CAYNNNNRTG	2 cut(s)	158, 468
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	2 cut(s)	237, 434
MspR9I	CCNGG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	6 cut(s)	18, 27, 48, 117, 403, 416
NarI	GGCGCC	1 cut(s)	21
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	2 cut(s)	101, 478
NlaIV	GGNNCC	3 cut(s)	22, 151, 275
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	2 cut(s)	232, 429
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	54, 178
PinAI	ACCGGT	1 cut(s)	433
PkrI	GCNGC	3 cut(s)	20, 50, 122
PleI	GAGTC	2 cut(s)	99, 336
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	2 cut(s)	99, 336
Psp6I	CCWGG	1 cut(s)	325
PspEI	GGTNACC	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	3 cut(s)	22, 151, 275
RseI	CAYNNNNRTG	2 cut(s)	158, 468
SaqAI	TTAA	4 cut(s)	381, 438, 479, 512
SatI	GCNGC	3 cut(s)	19, 49, 121
Sau3AI	GATC	1 cut(s)	201
SchI	GAGTC	2 cut(s)	99, 336
ScrFI	CCNGG	1 cut(s)	327
SetI	ASST	9 cut(s)	72, 132, 171, 234, 287, 378, 408, 470, 511
SfoI	GGCGCC	1 cut(s)	22
SmiMI	CAYNNNNRTG	2 cut(s)	158, 468
Sse9I	AATT	2 cut(s)	292, 458
SsiI	CCGC	3 cut(s)	12, 18, 51
SspDI	GGCGCC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	325
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	1 cut(s)	347
TasI	AATT	2 cut(s)	292, 458
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	2 cut(s)	54, 178
Tru1I	TTAA	4 cut(s)	381, 438, 479, 512
Tru9I	TTAA	4 cut(s)	381, 438, 479, 512
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	2 cut(s)	232, 429
TseI	GCWGC	2 cut(s)	48, 120
Tsp45I	GTSAC	2 cut(s)	232, 429
TspDTI	ATGAA	2 cut(s)	21, 311
TspRI	CASTG	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	334
XmnI	GAANNNNTTC	1 cut(s)	286
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.