Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Reverse (-)

7451579 .. 7452019

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0043900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCGTCAATCTCTTCTCGTCGTCAATGGAAATACGATGTGTTTCTAAGTTTCAGGGGGGAAGATACCCGCATGGGTTTTACCGGTAATCTGTATGCTACACTAAATCAGAAAGGAATTCTGACCTTTATGGATGACGCAGAGCTTGAGAAAGGAAAATCCATTAGGCCTGAACTTTTAGCTGCAATTGAGGACTCTAGATGTGCGATTGTCATTCTCTCACAGAACTATGCTCGTTCGTCATGGTGCTTGGATGAACTCGTCAAGATTATTCAATGCATGAAAGAGATGGGCCAACAAGTCCTCCCCGTCTTCTACGGCGTGAATCCTTCTGAAGTGCGGCACCAAAGGGGAAGGTTTGAGCTCAAAGTAGGGGAACCCCAAGTAGAAGTAAGGGAACATGAAGAAGTTACAGACTATATGCGCGGAGAGCTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

146

Amino Acids

16.87

Weight (kDa)

5.49

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	11 - 124	3.5e-43	TIR domain
TIR_2	PF13676	14 - 110	3.1e-17	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	342
AccII	CGCG	1 cut(s)	426
AciI	CCGC	3 cut(s)	70, 340, 426
AcsI	RAATTY	1 cut(s)	117
AcuI	CTGAAG	1 cut(s)	354
AcyI	GRCGYC	1 cut(s)	5
AgeI	ACCGGT	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	275
AluBI	AGCT	4 cut(s)	145, 182, 364, 433
AluI	AGCT	4 cut(s)	145, 182, 364, 433
Alw21I	GWGCWC	1 cut(s)	366
AoxI	GGCC	2 cut(s)	167, 292
ApeKI	GCWGC	2 cut(s)	182, 433
ApoI	RAATTY	1 cut(s)	117
AsiGI	ACCGGT	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	342
BanII	GRGCYC	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	169, 420
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	1 cut(s)	334
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	3 cut(s)	183, 341, 434
BlsI	GCNGC	3 cut(s)	184, 342, 435
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	2 cut(s)	344, 378
BpiI	GAAGAC	1 cut(s)	304
BpuEI	CTTGAG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bse118I	RCCGGY	1 cut(s)	83
BseGI	GGATG	2 cut(s)	139, 259
BseXI	GCAGC	2 cut(s)	169, 420
Bsh1236I	CGCG	1 cut(s)	426
BshFI	GGCC	2 cut(s)	169, 294
BshNI	GGYRCC	1 cut(s)	342
BshTI	ACCGGT	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	84
BsnI	GGCC	2 cut(s)	169, 294
Bsp1286I	GDGCHC	1 cut(s)	366
BspACI	CCGC	3 cut(s)	70, 340, 426
BspANI	GGCC	2 cut(s)	169, 294
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	2 cut(s)	344, 378
BspT107I	GGYRCC	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	83
BssNI	GRCGYC	1 cut(s)	5
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	139, 259
BstFNI	CGCG	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	426
BstMWI	GCNNNNNNNGC	1 cut(s)	430
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	2 cut(s)	169, 420
BstV2I	GAAGAC	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	169, 294
BtsCI	GGATG	2 cut(s)	139, 259
CfoI	GCGC	1 cut(s)	426
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	146
CspAI	ACCGGT	1 cut(s)	83
CviAII	CATG	4 cut(s)	73, 243, 280, 401
CviJI	RGCY	6 cut(s)	145, 169, 182, 294, 364, 433
CviKI_1	RGCY	6 cut(s)	145, 169, 182, 294, 364, 433
DdeI	CTNAG	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Ecl136II	GAGCTC	1 cut(s)	364
Eco147I	AGGCCT	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	366
Eco53kI	GAGCTC	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	117
EcoT22I	ATGCAT	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	366
FaeI	CATG	4 cut(s)	76, 246, 283, 404
FaiI	YATR	9 cut(s)	74, 96, 131, 231, 244, 281, 402, 420, 422
FatI	CATG	4 cut(s)	72, 242, 279, 400
FauI	CCCGC	1 cut(s)	77
Fnu4HI	GCNGC	3 cut(s)	183, 341, 434
FokI	GGATG	2 cut(s)	146, 266
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	3 cut(s)	183, 341, 434
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	3 cut(s)	183, 341, 434
HaeIII	GGCC	2 cut(s)	169, 294
HapII	CCGG	1 cut(s)	84
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	426
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	76, 246, 283, 404
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HinfI	GANTC	2 cut(s)	194, 325
HpaII	CCGG	1 cut(s)	84
Hpy188I	TCNGA	3 cut(s)	111, 123, 334
Hpy188III	TCNNGA	2 cut(s)	198, 265
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	2 cut(s)	339, 348
HpyCH4V	TGCA	2 cut(s)	185, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	430
HpyF3I	CTNAG	1 cut(s)	47
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	76, 246, 283, 404
HspAI	GCGC	1 cut(s)	424
LpnPI	CCDG	3 cut(s)	40, 97, 183
Lsp1109I	GCAGC	2 cut(s)	169, 420
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	409
MboII	GAAGA	4 cut(s)	6, 74, 304, 416
MfeI	CAATTG	1 cut(s)	186
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	2 cut(s)	117, 186
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	2 cut(s)	184, 314
Mph1103I	ATGCAT	1 cut(s)	281
MspI	CCGG	1 cut(s)	84
MunI	CAATTG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	430
NlaIII	CATG	4 cut(s)	76, 246, 283, 404
NlaIV	GGNNCC	2 cut(s)	344, 378
NsiI	ATGCAT	1 cut(s)	281
PceI	AGGCCT	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	325
PinAI	ACCGGT	1 cut(s)	83
PkrI	GCNGC	3 cut(s)	184, 342, 435
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	366
PspN4I	GGNNCC	2 cut(s)	344, 378
PspPI	GGNCC	1 cut(s)	292
SacI	GAGCTC	1 cut(s)	366
SatI	GCNGC	3 cut(s)	183, 341, 434
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	6 cut(s)	128, 147, 184, 359, 366, 435
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	2 cut(s)	117, 186
SseBI	AGGCCT	1 cut(s)	169
SsiI	CCGC	3 cut(s)	70, 340, 426
SspMI	CTAG	1 cut(s)	198
SstI	GAGCTC	1 cut(s)	366
StuI	AGGCCT	1 cut(s)	169
TasI	AATT	2 cut(s)	117, 186
TauI	GCSGC	1 cut(s)	343
TfiI	GAWTC	1 cut(s)	325
TseI	GCWGC	2 cut(s)	182, 433
TspDTI	ATGAA	3 cut(s)	270, 296, 417
XapI	RAATTY	1 cut(s)	117
XbaI	TCTAGA	1 cut(s)	197
XspI	CTAG	1 cut(s)	198
Zsp2I	ATGCAT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.