Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Reverse (-)

56909597 .. 56910169

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004173

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCTTCTTCGTCATTGAGATCTTCGTTGACAATAACGGCAGCGGCCGCTGAGCTAGAAGGCTTCGGCAGCAGAATCAGAGGCTTCGGCTGCAGAATCGGAGGCTTGAAGGTCTTTGTCGTCGTCGGCGACAGCAAAAGCCACATTTTACTCGGCGTCAAGTGCAACAAGGAGGTTGCTACTGCTATTCGTGGACCCATTTTTGTGGCTAAACTATGGGTGATTCCTGTGAGGAGGGGTTACAAGATCGGAAAGCCCCACACCATGCATTGCAAGGTCATCGGAAAGTGTGGCTCTGTTATCGTAAGAATGGTGCCTGCTCCTCGTGGTTCTGGTATTGTGGTGGCTAGGGTTCCCAAGAAGGTGTTCCAATTTGCTGGTATTGATGATGTGTTCACTTCATCCGGGGGGTCTACCAAGACTCTCGAAACTTTGTCAAGGTTTGCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

151

Amino Acids

15.86

Weight (kDa)

10.65

Isoelectric Point (pI)

33.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	32 - 78	2.1e-09	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	95 - 142	1.9e-14	Ribosomal protein S5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	313
AccI	GTMKAC	1 cut(s)	413
AciI	CCGC	2 cut(s)	44, 48
AcoI	YGGCCR	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	156
AgsI	TTSAA	1 cut(s)	109
AjuI	GAANNNNNNNTTGG	2 cut(s)	350, 382
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	3 cut(s)	41, 69, 90
Asp700I	GAANNNNTTC	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	406
AsuHPI	GGTGA	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	313
BauI	CACGAG	1 cut(s)	324
BbvI	GCAGC	3 cut(s)	53, 77, 81
BceAI	ACGGC	1 cut(s)	54
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BcnI	CCSGG	1 cut(s)	406
BfaI	CTAG	2 cut(s)	56, 348
BfmI	CTRYAG	1 cut(s)	91
BglII	AGATCT	1 cut(s)	20
BisI	GCNGC	5 cut(s)	42, 45, 48, 70, 91
BlpI	GCTNAGC	1 cut(s)	51
BlsI	GCNGC	5 cut(s)	43, 46, 49, 71, 92
Bme1390I	CCNGG	1 cut(s)	406
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	3 cut(s)	196, 315, 354
BmrFI	CCNGG	1 cut(s)	406
Bpu1102I	GCTNAGC	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	406
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	405
BseGI	GGATG	1 cut(s)	401
BseMI	GCAATG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	42
BseRI	GAGGAG	2 cut(s)	247, 312
BseX3I	CGGCCG	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	53, 77, 81
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	47
BshNI	GGYRCC	1 cut(s)	313
BsiEI	CGRYCG	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	405
BsnI	GGCC	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	20, 246
Bsp1720I	GCTNAGC	1 cut(s)	51
BspACI	CCGC	2 cut(s)	44, 48
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	3 cut(s)	196, 315, 354
BspMAI	CTGCAG	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	2 cut(s)	20, 246
BssNI	GRCGYC	1 cut(s)	156
BssSI	CACGAG	1 cut(s)	324
Bst2BI	CACGAG	1 cut(s)	324
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	401
BstKTI	GATC	2 cut(s)	23, 249
BstMBI	GATC	2 cut(s)	20, 246
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 69, 90, 162
BstSCI	CCNGG	1 cut(s)	404
BstSFI	CTRYAG	1 cut(s)	91
BstV1I	GCAGC	3 cut(s)	53, 77, 81
BstX2I	RGATCY	1 cut(s)	20
BstXI	CCANNNNNNTGG	2 cut(s)	205, 377
BstYI	RGATCY	1 cut(s)	20
BstZI	CGGCCG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	401
Cac8I	GCNNGC	1 cut(s)	318
CciNI	GCGGCCGC	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	194
CseI	GACGC	1 cut(s)	145
CviAII	CATG	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	2 cut(s)	22, 248
DpnII	GATC	2 cut(s)	20, 246
EaeI	YGGCCR	1 cut(s)	45
EagI	CGGCCG	1 cut(s)	45
EclXI	CGGCCG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	194
Eco52I	CGGCCG	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	270
FaeI	CATG	1 cut(s)	268
FaiI	YATR	2 cut(s)	217, 266
FalI	AAGNNNNNCTT	1 cut(s)	430
FatI	CATG	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	413
Fnu4HI	GCNGC	5 cut(s)	42, 45, 48, 70, 91
FokI	GGATG	1 cut(s)	388
Fsp4HI	GCNGC	5 cut(s)	42, 45, 48, 70, 91
FspBI	CTAG	2 cut(s)	56, 348
GluI	GCNGC	5 cut(s)	42, 45, 48, 70, 91
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	405
HgaI	GACGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	268
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	4 cut(s)	75, 96, 223, 421
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	4 cut(s)	30, 194, 396, 414
Hpy188I	TCNGA	4 cut(s)	80, 101, 251, 284
Hpy188III	TCNNGA	1 cut(s)	425
Hpy8I	GTNNAC	4 cut(s)	30, 194, 396, 414
Hpy99I	CGWCG	2 cut(s)	125, 128
HpyAV	CCTTC	3 cut(s)	53, 103, 355
HpyCH4V	TGCA	4 cut(s)	93, 165, 268, 273
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 69, 90, 162
HpyF3I	CTNAG	1 cut(s)	51
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	20, 246
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	5 cut(s)	240, 318, 330, 363, 418
Lsp1109I	GCAGC	3 cut(s)	53, 77, 81
MaeI	CTAG	2 cut(s)	56, 348
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	2 cut(s)	22, 248
MboI	GATC	2 cut(s)	20, 246
MboII	GAAGA	1 cut(s)	15
MflI	RGATCY	1 cut(s)	20
MluCI	AATT	1 cut(s)	371
MlyI	GAGTC	1 cut(s)	415
MnlI	CCTC	6 cut(s)	74, 95, 166, 225, 228, 333
Mph1103I	ATGCAT	1 cut(s)	270
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	1 cut(s)	451
MslI	CAYNNNNRTG	1 cut(s)	203
MspA1I	CMGCKG	2 cut(s)	44, 50
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	406
MwoI	GCNNNNNNNGC	4 cut(s)	47, 69, 90, 162
NciI	CCSGG	1 cut(s)	406
NdeII	GATC	2 cut(s)	20, 246
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	3 cut(s)	196, 315, 354
NmeAIII	GCCGAG	1 cut(s)	132
NotI	GCGGCCGC	1 cut(s)	45
NsiI	ATGCAT	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	3 cut(s)	75, 96, 223
PkrI	GCNGC	5 cut(s)	43, 46, 49, 71, 92
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
PspN4I	GGNNCC	3 cut(s)	196, 315, 354
PspPI	GGNCC	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	451
SatI	GCNGC	5 cut(s)	42, 45, 48, 70, 91
Sau3AI	GATC	2 cut(s)	20, 246
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	406
SetI	ASST	6 cut(s)	57, 114, 177, 279, 366, 443
SfcI	CTRYAG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	371
SsiI	CCGC	2 cut(s)	44, 48
SspMI	CTAG	2 cut(s)	56, 348
StyD4I	CCNGG	1 cut(s)	404
TaqI	TCGA	1 cut(s)	426
TasI	AATT	1 cut(s)	371
TauI	GCSGC	2 cut(s)	47, 50
TfiI	GAWTC	3 cut(s)	75, 96, 223
Tru1I	TTAA	1 cut(s)	451
Tru9I	TTAA	1 cut(s)	451
TseI	GCWGC	3 cut(s)	41, 69, 90
TspDTI	ATGAA	1 cut(s)	390
VpaK11BI	GGWCC	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	2 cut(s)	56, 348
Zsp2I	ATGCAT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.