Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Forward (+)

41185786 .. 41187000

Gene Structure 1215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0332200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGCACAGGAAGAGTAATGGCACACCAGGAGCAGTACCAGCATGTGCAGCATGCAAGCATCAAAGGAAAAAGTGCAACGAAGGTTGCACTTTGGCACCTTTTTTTCCAGTGGAGAGGAATCGAGAATTCCAAGCCGTGCACAAAGTTTTCGGGGTTAGCAATGTAACAAAGATGGTGAAGAATGCCAATGAAGCGAACCGGAGAAAGGTTGTTGATTCATTGGTATGGGAAGCTCTTTGCAGGCAAAAAGACCCGGTGCTTGGTCCTTACGGAGAGTATAGGATGATTTTCGATGAGCTCAAGATGTATAAAAATCATGAGAACCAAACGGTTCCTTTACAAGTGCAAAAGGGCATGTGTTACAAATCTCTGACGGATTTAGTTGCTTGGAACTATGAAACTAATGGGATTAGCAATGGAATAAATGGAGGAAATGGAATCACTACTACTAATAACAATTTGGATTATGATCTTCAGGTTAACGAAAACGTCAGAATCGATTCAGTCCCGCCATATGGTTATCCTTTAACTTGTGAGCAAGAAATTGCAGCAGAGAAGATAAAGCAAGTAAAAATAGCTGCCGATTCCATTGTTGTTCCAGTAGTACACCAGCAGGGGCATTCTATCAACAACATTAATCAGCAGTACTATATTTCAGGTCAACTTAATCAACTCATTGGCAAGCCATTAGAAAGGACAATATGGGAAGGCGGATCCTTAAAGCTTTGCATTGAAATAGCTAAGGTCGGTATATGTGATGATAATGATGTTATGGCTTATAGTGTCCATGCTGAAGTTAAACACTTGCTCTTGATCAGTGAAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

275

Amino Acids

30.78

Weight (kDa)

7.57

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	14 - 107	1.1e-31	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	94
AciI	CCGC	2 cut(s)	509, 711
AclWI	GGATC	2 cut(s)	708, 721
AcsI	RAATTY	1 cut(s)	125
AcuI	CTGAAG	2 cut(s)	458, 813
AfaI	GTAC	3 cut(s)	36, 606, 647
AfiI	CCNNNNNNNGG	3 cut(s)	205, 260, 515
AgsI	TTSAA	1 cut(s)	734
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	5 cut(s)	233, 298, 578, 724, 740
AluI	AGCT	5 cut(s)	233, 298, 578, 724, 740
Alw21I	GWGCWC	2 cut(s)	141, 300
Alw44I	GTGCAC	1 cut(s)	137
AlwI	GGATC	2 cut(s)	708, 721
ApaLI	GTGCAC	1 cut(s)	137
ApeKI	GCWGC	3 cut(s)	47, 548, 578
ApoI	RAATTY	1 cut(s)	125
AseI	ATTAAT	1 cut(s)	636
Asp700I	GAANNNNTTC	1 cut(s)	499
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	141
BamHI	GGATCC	1 cut(s)	713
BanI	GGYRCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	300
Bbv12I	GWGCWC	2 cut(s)	141, 300
BbvI	GCAGC	3 cut(s)	59, 560, 565
BccI	CCATC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	813
BcnI	CCSGG	1 cut(s)	254
BfaI	CTAG	1 cut(s)	826
BisI	GCNGC	3 cut(s)	48, 549, 579
BlsI	GCNGC	3 cut(s)	49, 550, 580
BmcAI	AGTACT	1 cut(s)	647
Bme1390I	CCNGG	2 cut(s)	27, 254
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	3 cut(s)	96, 333, 715
BmrFI	CCNGG	2 cut(s)	27, 254
BmsI	GCATC	1 cut(s)	67
Bpu10I	CCTNAGC	1 cut(s)	741
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	254
Bsa29I	ATCGAT	1 cut(s)	498
BsaBI	GATNNNNATC	1 cut(s)	468
BsaWI	WCCGGW	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 260, 515
Bse1I	ACTGG	2 cut(s)	107, 599
Bse3DI	GCAATG	2 cut(s)	166, 421
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	27
BseCI	ATCGAT	1 cut(s)	498
BseGI	GGATG	1 cut(s)	288
BseJI	GATNNNNATC	1 cut(s)	468
BseLI	CCNNNNNNNGG	3 cut(s)	205, 260, 515
BseMI	GCAATG	2 cut(s)	166, 421
BseNI	ACTGG	2 cut(s)	107, 599
BseSI	GKGCMC	1 cut(s)	141
BseXI	GCAGC	3 cut(s)	59, 560, 565
BsgI	GTGCAG	1 cut(s)	66
BshNI	GGYRCC	1 cut(s)	94
BshVI	ATCGAT	1 cut(s)	498
BsiHKAI	GWGCWC	2 cut(s)	141, 300
BsiSI	CCGG	2 cut(s)	199, 254
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	3 cut(s)	205, 260, 515
BsmFI	GGGAC	1 cut(s)	491
BsmI	GAATGC	2 cut(s)	187, 619
Bsp1286I	GDGCHC	2 cut(s)	141, 300
Bsp143I	GATC	3 cut(s)	469, 713, 813
BspACI	CCGC	2 cut(s)	509, 711
BspDI	ATCGAT	1 cut(s)	498
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	3 cut(s)	96, 333, 715
BspPI	GGATC	2 cut(s)	708, 721
BspT107I	GGYRCC	1 cut(s)	94
BsrDI	GCAATG	2 cut(s)	166, 421
BsrI	ACTGG	2 cut(s)	107, 599
BssMI	GATC	3 cut(s)	469, 713, 813
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	1 cut(s)	5
BstC8I	GCNNGC	4 cut(s)	52, 56, 242, 683
BstDEI	CTNAG	1 cut(s)	741
BstF5I	GGATG	1 cut(s)	288
BstKTI	GATC	3 cut(s)	472, 716, 816
BstMBI	GATC	3 cut(s)	469, 713, 813
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 47, 191
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	3 cut(s)	45, 54, 358
BstSCI	CCNGG	2 cut(s)	25, 252
BstSLI	GKGCMC	1 cut(s)	141
BstV1I	GCAGC	3 cut(s)	59, 560, 565
BstX2I	RGATCY	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	713
Bsu15I	ATCGAT	1 cut(s)	498
BsuTUI	ATCGAT	1 cut(s)	498
BtsCI	GGATG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	114, 823
Cac8I	GCNNGC	4 cut(s)	52, 56, 242, 683
CciI	TCATGA	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	263
ClaI	ATCGAT	1 cut(s)	498
Csp6I	GTAC	3 cut(s)	35, 605, 646
CviAII	CATG	5 cut(s)	42, 51, 317, 355, 788
CviJI	RGCY	8 cut(s)	134, 233, 298, 578, 685, 724, 740, 776
CviKI_1	RGCY	8 cut(s)	134, 233, 298, 578, 685, 724, 740, 776
CviQI	GTAC	3 cut(s)	35, 605, 646
DdeI	CTNAG	1 cut(s)	741
DpnI	GATC	3 cut(s)	471, 715, 815
DpnII	GATC	3 cut(s)	469, 713, 813
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
EciI	GGCGGA	1 cut(s)	726
Ecl136II	GAGCTC	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	2 cut(s)	458, 813
EcoICRI	GAGCTC	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	300
FaeI	CATG	5 cut(s)	45, 54, 320, 358, 791
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	5 cut(s)	41, 50, 316, 354, 787
FauI	CCCGC	1 cut(s)	516
FauNDI	CATATG	1 cut(s)	514
FbaI	TGATCA	1 cut(s)	813
Fnu4HI	GCNGC	3 cut(s)	48, 549, 579
FokI	GGATG	1 cut(s)	295
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	3 cut(s)	48, 549, 579
FspBI	CTAG	1 cut(s)	826
GluI	GCNGC	3 cut(s)	48, 549, 579
HapII	CCGG	2 cut(s)	199, 254
Hin1II	CATG	5 cut(s)	45, 54, 320, 358, 791
HincII	GTYRAC	2 cut(s)	481, 662
HindII	GTYRAC	2 cut(s)	481, 662
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	6 cut(s)	118, 215, 438, 495, 500, 584
HpaI	GTTAAC	1 cut(s)	481
HpaII	CCGG	2 cut(s)	199, 254
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	4 cut(s)	139, 481, 607, 662
Hpy188I	TCNGA	2 cut(s)	372, 494
Hpy188III	TCNNGA	4 cut(s)	122, 301, 317, 811
Hpy8I	GTNNAC	4 cut(s)	139, 481, 607, 662
HpyAV	CCTTC	2 cut(s)	74, 701
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	1 cut(s)	489
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 47, 191
HpyF3I	CTNAG	1 cut(s)	741
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	5 cut(s)	45, 54, 320, 358, 791
Ksp22I	TGATCA	1 cut(s)	813
KspAI	GTTAAC	1 cut(s)	481
Kzo9I	GATC	3 cut(s)	469, 713, 813
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	3 cut(s)	59, 560, 565
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	826
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	2 cut(s)	163, 359
MalI	GATC	3 cut(s)	471, 715, 815
MboI	GATC	3 cut(s)	469, 713, 813
MboII	GAAGA	4 cut(s)	22, 190, 464, 568
MflI	RGATCY	1 cut(s)	713
MhlI	GDGCHC	2 cut(s)	141, 300
MluCI	AATT	3 cut(s)	125, 457, 543
MnlI	CCTC	2 cut(s)	108, 422
MroXI	GAANNNNTTC	1 cut(s)	499
MseI	TTAA	6 cut(s)	480, 527, 636, 666, 719, 798
MslI	CAYNNNNRTG	1 cut(s)	223
MspI	CCGG	2 cut(s)	199, 254
MspR9I	CCNGG	2 cut(s)	27, 254
Mva1269I	GAATGC	2 cut(s)	187, 619
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	38, 47, 191
NciI	CCSGG	1 cut(s)	254
NdeI	CATATG	1 cut(s)	514
NdeII	GATC	3 cut(s)	469, 713, 813
NlaIII	CATG	5 cut(s)	45, 54, 320, 358, 791
NlaIV	GGNNCC	3 cut(s)	96, 333, 715
NspI	RCATGY	3 cut(s)	45, 54, 358
PaeI	GCATGC	1 cut(s)	54
PagI	TCATGA	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	495
PctI	GAATGC	2 cut(s)	187, 619
PdmI	GAANNNNTTC	1 cut(s)	499
PfeI	GAWTC	6 cut(s)	118, 215, 438, 495, 500, 584
PkrI	GCNGC	3 cut(s)	49, 550, 580
PshBI	ATTAAT	1 cut(s)	636
Psp124BI	GAGCTC	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	3 cut(s)	96, 333, 715
PspPI	GGNCC	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	713
RsaI	GTAC	3 cut(s)	36, 606, 647
RsaNI	GTAC	3 cut(s)	35, 605, 646
RseI	CAYNNNNRTG	1 cut(s)	223
SacI	GAGCTC	1 cut(s)	300
SaqAI	TTAA	6 cut(s)	480, 527, 636, 666, 719, 798
SatI	GCNGC	3 cut(s)	48, 549, 579
Sau3AI	GATC	3 cut(s)	469, 713, 813
Sau96I	GGNCC	1 cut(s)	263
ScaI	AGTACT	1 cut(s)	647
ScrFI	CCNGG	2 cut(s)	27, 254
SduI	GDGCHC	2 cut(s)	141, 300
SfaNI	GCATC	1 cut(s)	67
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
SphI	GCATGC	1 cut(s)	54
Sse9I	AATT	3 cut(s)	125, 457, 543
SsiI	CCGC	2 cut(s)	509, 711
SspMI	CTAG	1 cut(s)	826
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	2 cut(s)	25, 252
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	3 cut(s)	121, 291, 498
TasI	AATT	3 cut(s)	125, 457, 543
TatI	WGTACW	2 cut(s)	604, 645
TfiI	GAWTC	6 cut(s)	118, 215, 438, 495, 500, 584
Tru1I	TTAA	6 cut(s)	480, 527, 636, 666, 719, 798
Tru9I	TTAA	6 cut(s)	480, 527, 636, 666, 719, 798
TscAI	CASTG	2 cut(s)	114, 823
TseI	GCWGC	3 cut(s)	47, 548, 578
TspDTI	ATGAA	3 cut(s)	204, 207, 411
TspGWI	ACGGA	2 cut(s)	285, 389
TspRI	CASTG	2 cut(s)	114, 823
VneI	GTGCAC	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	263
VspI	ATTAAT	1 cut(s)	636
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	3 cut(s)	45, 54, 358
XmnI	GAANNNNTTC	1 cut(s)	499
XspI	CTAG	1 cut(s)	826
ZrmI	AGTACT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.