Prupe.2G075700_v2.0.a1

Belongs to the universal ribosomal protein uS5 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
11508017 .. 11511121
3105 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G075700.1

Sequence Viewer

Length: 822 bp
ATGGCAGAGAGACCAGCAGAGAGAGGCCGGGGTGGGTTCGGCCGAGGCTTCGGCGGGCGCGGAGGCGACCGCGGCCGCGGAGGAGGCCGACGCCGCCCCGGGCGCCGCGAGGAGGAAGAGAAGTGGGTCCCAGTGACCAAGCTCGGCCGCCTCGTGAAGGAAGGCAAGATCAAGAGCCTGGAGCAAATCTACCTCCACTCTCTACCCATCAAGGAGCACCAGATCATCGATGCTCTTGTCGCCTCCGGTAGCCTCAAGGATGAGGTGATGAAGATTATGCCGGTCCAGAAGCAGACTCGGGCCGGTCAGCGAACCCGATTTAAAGCCTTCGTTGTCGTAGGCGACAGCAATGGGCACGTCGGGCTCGGAGTCAAGTGCAGCAAGGAGGTGGCCACTGCGATACGTGGCGCGATCATATTGGCTAAGCTGTCTGTGATTCCGGTGAGGAGAGGGTACTGGGGTAACAAGATTGGGAAGCCCCATACGGTGCCGTGTAAGGTGACCGGCAAGTGTGGCTCTGTCACAGTCAGGATGGTGCCCGCTCCCCGTGGTGCTGGAATTGTGGCTGCCCGTGTGCCCAAGAAGGTCCTGCAGTTTGCTGGTATTGATGATGTTTTCACCTCATCCCGTGGCTCCACCAAGACGCTTGGCAACTTTGTCAAGGCTACTTTTGATTGCCTCCTGAAGACTTACGGTTTTCTGACCCCTGAATTCTGGAAAGAGACACGCTTCAGCAAATCTCCATTCCAAGAGTTCACAGACCTGTTGGGAAGGCCAACCAAGCCCCTTCTCATTGAAGATGTGGAGAAAGTAGAAGCCTAG

Protein Analysis

274

Amino Acids

29.9

Weight (kDa)

10.32

Isoelectric Point (pI)

32.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 102, 487, 535
AccBSI CCGCTC 1 cut(s) 542
AccII CGCG 5 cut(s) 60, 72, 78, 108, 410
AcoI YGGCCR 4 cut(s) 40, 73, 145, 390
AcsI RAATTY 1 cut(s) 710
AcuI CTGAAG 2 cut(s) 704, 715
AcyI GRCGYC 2 cut(s) 91, 103
AfaI GTAC 1 cut(s) 455
AfiI CCNNNNNNNGG 2 cut(s) 112, 157
AgsI TTSAA 1 cut(s) 797
AjiI CACGTC 1 cut(s) 358
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 2 cut(s) 142, 427
AluI AGCT 2 cut(s) 142, 427
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 2 cut(s) 4, 716
Ama87I CYCGRG 2 cut(s) 98, 297
AoxI GGCC 8 cut(s) 25, 40, 73, 85, 145, 300, 390, 773
ApeKI GCWGC 2 cut(s) 378, 566
ApoI RAATTY 1 cut(s) 710
AspLEI GCGC 3 cut(s) 60, 105, 410
AspS9I GGNCC 4 cut(s) 127, 283, 300, 586
AsuC2I CCSGG 3 cut(s) 29, 99, 100
AsuHPI GGTGA 4 cut(s) 277, 454, 511, 610
AvaI CYCGRG 2 cut(s) 98, 297
AvaII GGWCC 3 cut(s) 127, 283, 586
BaeGI GKGCMC 3 cut(s) 357, 540, 579
BaeI ACNNNNGTAYC 2 cut(s) 445, 478
BalI TGGCCA 1 cut(s) 392
BanI GGYRCC 3 cut(s) 102, 487, 535
BanII GRGCYC 1 cut(s) 366
BauI CACGAG 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 692
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 2 cut(s) 390, 553
BccI CCATC 2 cut(s) 215, 526
BceAI ACGGC 1 cut(s) 475
BciT130I CCWGG 1 cut(s) 179
BcnI CCSGG 3 cut(s) 29, 99, 100
BcoDI GTCTC 2 cut(s) 4, 716
BfaI CTAG 1 cut(s) 820
BfmI CTRYAG 1 cut(s) 590
BfoI RGCGCY 1 cut(s) 106
BisI GCNGC 7 cut(s) 73, 76, 94, 106, 148, 379, 567
BlpI GCTNAGC 1 cut(s) 423
BlsI GCNGC 7 cut(s) 74, 77, 95, 107, 149, 380, 568
Bme1390I CCNGG 4 cut(s) 29, 99, 100, 179
Bme18I GGWCC 3 cut(s) 127, 283, 586
BmeT110I CYCGRG 2 cut(s) 98, 297
BmgBI CACGTC 1 cut(s) 358
BmgT120I GGNCC 4 cut(s) 127, 283, 300, 586
BmiI GGNNCC 6 cut(s) 104, 128, 129, 489, 537, 634
BmrFI CCNGG 4 cut(s) 29, 99, 100, 179
BmrI ACTGGG 2 cut(s) 125, 466
BmsI GCATC 1 cut(s) 220
BmuI ACTGGG 2 cut(s) 125, 466
BpiI GAAGAC 1 cut(s) 692
BpmI CTGGAG 1 cut(s) 200
Bpu1102I GCTNAGC 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 3 cut(s) 29, 99, 100
Bsa29I ATCGAT 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 404
BsaHI GRCGYC 2 cut(s) 91, 103
BsaI GGTCTC 1 cut(s) 4
BsaJI CCNNGG 8 cut(s) 28, 43, 70, 76, 97, 98, 547, 628
BsaWI WCCGGW 2 cut(s) 245, 439
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 157
Bse118I RCCGGY 3 cut(s) 280, 302, 503
Bse1I ACTGG 2 cut(s) 131, 461
Bse3DI GCAATG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 179
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 8 cut(s) 28, 43, 70, 76, 97, 98, 547, 628
BseGI GGATG 3 cut(s) 265, 537, 623
BseLI CCNNNNNNNGG 2 cut(s) 112, 157
BseMI GCAATG 1 cut(s) 355
BseNI ACTGG 2 cut(s) 131, 461
BseRI GAGGAG 3 cut(s) 96, 125, 460
BseSI GKGCMC 3 cut(s) 357, 540, 579
BseX3I CGGCCG 3 cut(s) 40, 73, 145
BseXI GCAGC 2 cut(s) 390, 553
BsgI GTGCAG 1 cut(s) 397
Bsh1236I CGCG 5 cut(s) 60, 72, 78, 108, 410
Bsh1285I CGRYCG 4 cut(s) 43, 70, 76, 148
BshFI GGCC 8 cut(s) 27, 42, 75, 87, 147, 302, 392, 775
BshNI GGYRCC 3 cut(s) 102, 487, 535
BshVI ATCGAT 1 cut(s) 228
BsiEI CGRYCG 4 cut(s) 43, 70, 76, 148
BsiHKAI GWGCWC 1 cut(s) 219
BsiHKCI CYCGRG 2 cut(s) 98, 297
BsiSI CCGG 7 cut(s) 28, 99, 246, 281, 303, 440, 504
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 112, 157
BsmAI GTCTC 2 cut(s) 4, 716
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 8 cut(s) 27, 42, 75, 87, 147, 302, 392, 775
Bso31I GGTCTC 1 cut(s) 4
BsoBI CYCGRG 2 cut(s) 98, 297
Bsp1286I GDGCHC 5 cut(s) 219, 357, 366, 540, 579
Bsp143I GATC 3 cut(s) 168, 222, 411
Bsp1720I GCTNAGC 1 cut(s) 423
BspANI GGCC 8 cut(s) 27, 42, 75, 87, 147, 302, 392, 775
BspDI ATCGAT 1 cut(s) 228
BspFNI CGCG 5 cut(s) 60, 72, 78, 108, 410
BspLI GGNNCC 6 cut(s) 104, 128, 129, 489, 537, 634
BspMAI CTGCAG 1 cut(s) 594
BspT107I GGYRCC 3 cut(s) 102, 487, 535
BspTNI GGTCTC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 355
BsrFI RCCGGY 3 cut(s) 280, 302, 503
BsrI ACTGG 2 cut(s) 131, 461
BssAI RCCGGY 3 cut(s) 280, 302, 503
BssECI CCNNGG 8 cut(s) 28, 43, 70, 76, 97, 98, 547, 628
BssMI GATC 3 cut(s) 168, 222, 411
BssNI GRCGYC 2 cut(s) 91, 103
BssSI CACGAG 1 cut(s) 152
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 3 cut(s) 487, 526, 695
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 2 cut(s) 91, 103
BstBAI YACGTR 1 cut(s) 404
BstC8I GCNNGC 2 cut(s) 56, 540
BstDEI CTNAG 1 cut(s) 423
BstDSI CCRYGG 4 cut(s) 70, 76, 547, 628
BstEII GGTNACC 1 cut(s) 499
BstENI CCTNNNNNAGG 1 cut(s) 155
BstF5I GGATG 3 cut(s) 265, 537, 623
BstFNI CGCG 5 cut(s) 60, 72, 78, 108, 410
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 3 cut(s) 60, 105, 410
BstKTI GATC 3 cut(s) 171, 225, 414
BstMAI GTCTC 2 cut(s) 4, 716
BstMBI GATC 3 cut(s) 168, 222, 411
BstMCI CGRYCG 4 cut(s) 43, 70, 76, 148
BstMWI GCNNNNNNNGC 8 cut(s) 72, 84, 93, 102, 239, 361, 513, 781
BstNI CCWGG 1 cut(s) 179
BstPI GGTNACC 1 cut(s) 499
BstSCI CCNGG 4 cut(s) 27, 97, 98, 177
BstSFI CTRYAG 1 cut(s) 590
BstSLI GKGCMC 3 cut(s) 357, 540, 579
BstUI CGCG 5 cut(s) 60, 72, 78, 108, 410
BstV1I GCAGC 2 cut(s) 390, 553
BstV2I GAAGAC 1 cut(s) 692
BstZI CGGCCG 3 cut(s) 40, 73, 145
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 8 cut(s) 27, 42, 75, 87, 147, 302, 392, 775
BsuTUI ATCGAT 1 cut(s) 228
BtgI CCRYGG 4 cut(s) 70, 76, 547, 628
BtrI CACGTC 1 cut(s) 358
BtsCI GGATG 3 cut(s) 265, 537, 623
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 2 cut(s) 138, 393
Cac8I GCNNGC 2 cut(s) 56, 540
CciNI GCGGCCGC 1 cut(s) 73
CfoI GCGC 3 cut(s) 60, 105, 410
Cfr10I RCCGGY 3 cut(s) 280, 302, 503
Cfr13I GGNCC 4 cut(s) 127, 283, 300, 586
Cfr42I CCGCGG 2 cut(s) 73, 79
Cfr9I CCCGGG 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 228
CseI GACGC 2 cut(s) 99, 652
Csp6I GTAC 1 cut(s) 454
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 1 cut(s) 423
DinI GGCGCC 1 cut(s) 104
DpnI GATC 3 cut(s) 170, 224, 413
DpnII GATC 3 cut(s) 168, 222, 411
DraI TTTAAA 1 cut(s) 322
EaeI YGGCCR 4 cut(s) 40, 73, 145, 390
EagI CGGCCG 3 cut(s) 40, 73, 145
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EclXI CGGCCG 3 cut(s) 40, 73, 145
Eco24I GRGCYC 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 4
Eco47I GGWCC 3 cut(s) 127, 283, 586
Eco52I CGGCCG 3 cut(s) 40, 73, 145
Eco57I CTGAAG 2 cut(s) 704, 715
Eco88I CYCGRG 2 cut(s) 98, 297
Eco91I GGTNACC 1 cut(s) 499
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoO109I RGGNCCY 2 cut(s) 127, 586
EcoO65I GGTNACC 1 cut(s) 499
EcoRI GAATTC 1 cut(s) 710
EcoRII CCWGG 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 366
EgeI GGCGCC 1 cut(s) 104
EheI GGCGCC 1 cut(s) 104
FaiI YATR 3 cut(s) 278, 416, 483
FaqI GGGAC 1 cut(s) 113
FauI CCCGC 2 cut(s) 47, 547
Fnu4HI GCNGC 7 cut(s) 73, 76, 94, 106, 148, 379, 567
FokI GGATG 3 cut(s) 272, 544, 610
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 7 cut(s) 73, 76, 94, 106, 148, 379, 567
FspBI CTAG 1 cut(s) 820
GlaI GCGC 3 cut(s) 59, 104, 409
GluI GCNGC 7 cut(s) 73, 76, 94, 106, 148, 379, 567
GsuI CTGGAG 1 cut(s) 200
HaeII RGCGCY 1 cut(s) 106
HaeIII GGCC 8 cut(s) 27, 42, 75, 87, 147, 302, 392, 775
HapII CCGG 7 cut(s) 28, 99, 246, 281, 303, 440, 504
HgaI GACGC 2 cut(s) 99, 652
HhaI GCGC 3 cut(s) 60, 105, 410
Hin1I GRCGYC 2 cut(s) 91, 103
Hin6I GCGC 3 cut(s) 58, 103, 408
HinP1I GCGC 3 cut(s) 58, 103, 408
HinfI GANTC 3 cut(s) 295, 369, 436
HpaII CCGG 7 cut(s) 28, 99, 246, 281, 303, 440, 504
HphI GGTGA 4 cut(s) 277, 454, 511, 610
Hpy166II GTNNAC 1 cut(s) 756
Hpy188I TCNGA 2 cut(s) 368, 702
Hpy188III TCNNGA 6 cut(s) 154, 172, 286, 529, 682, 715
Hpy8I GTNNAC 1 cut(s) 756
Hpy99I CGWCG 2 cut(s) 93, 362
HpyAV CCTTC 6 cut(s) 151, 155, 337, 577, 765, 797
HpyCH4III ACNGT 3 cut(s) 487, 526, 695
HpyCH4IV ACGT 2 cut(s) 357, 403
HpyCH4V TGCA 2 cut(s) 378, 592
HpyF10VI GCNNNNNNNGC 8 cut(s) 72, 84, 93, 102, 239, 361, 513, 781
HpyF3I CTNAG 1 cut(s) 423
HpySE526I ACGT 2 cut(s) 357, 403
Hsp92I GRCGYC 2 cut(s) 91, 103
HspAI GCGC 3 cut(s) 58, 103, 408
KasI GGCGCC 1 cut(s) 102
KflI GGGWCCC 1 cut(s) 127
KspI CCGCGG 2 cut(s) 73, 79
Kzo9I GATC 3 cut(s) 168, 222, 411
LmnI GCTCC 4 cut(s) 181, 214, 547, 638
Lsp1109I GCAGC 2 cut(s) 390, 553
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 820
MaeII ACGT 2 cut(s) 357, 403
MaeIII GTNAC 4 cut(s) 133, 461, 499, 520
MalI GATC 3 cut(s) 170, 224, 413
MbiI CCGCTC 1 cut(s) 542
MboI GATC 3 cut(s) 168, 222, 411
MboII GAAGA 4 cut(s) 128, 283, 697, 809
MhlI GDGCHC 5 cut(s) 219, 357, 366, 540, 579
MlsI TGGCCA 1 cut(s) 392
MluCI AATT 2 cut(s) 558, 710
MluNI TGGCCA 1 cut(s) 392
Mly113I GGCGCC 1 cut(s) 103
MlyI GAGTC 2 cut(s) 289, 378
Mox20I TGGCCA 1 cut(s) 392
MscI TGGCCA 1 cut(s) 392
MseI TTAA 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 392
MspA1I CMGCKG 2 cut(s) 72, 78
MspI CCGG 7 cut(s) 28, 99, 246, 281, 303, 440, 504
MspR9I CCNGG 4 cut(s) 29, 99, 100, 179
MvaI CCWGG 1 cut(s) 179
MvnI CGCG 5 cut(s) 60, 72, 78, 108, 410
MwoI GCNNNNNNNGC 8 cut(s) 72, 84, 93, 102, 239, 361, 513, 781
NarI GGCGCC 1 cut(s) 103
NciI CCSGG 3 cut(s) 29, 99, 100
NdeII GATC 3 cut(s) 168, 222, 411
NlaIV GGNNCC 6 cut(s) 104, 128, 129, 489, 537, 634
NmeAIII GCCGAG 2 cut(s) 68, 123
NmuCI GTSAC 3 cut(s) 133, 499, 520
NotI GCGGCCGC 1 cut(s) 73
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 1 cut(s) 436
PkrI GCNGC 7 cut(s) 74, 77, 95, 107, 149, 380, 568
PleI GAGTC 2 cut(s) 289, 377
PluTI GGCGCC 1 cut(s) 106
PpsI GAGTC 2 cut(s) 289, 377
Ppu21I YACGTR 1 cut(s) 404
PpuMI RGGWCCY 2 cut(s) 127, 586
Psp5II RGGWCCY 2 cut(s) 127, 586
Psp6I CCWGG 1 cut(s) 177
PspEI GGTNACC 1 cut(s) 499
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 6 cut(s) 104, 128, 129, 489, 537, 634
PspPI GGNCC 4 cut(s) 127, 283, 300, 586
PspPPI RGGWCCY 2 cut(s) 127, 586
PstI CTGCAG 1 cut(s) 594
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
SacII CCGCGG 2 cut(s) 73, 79
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 7 cut(s) 73, 76, 94, 106, 148, 379, 567
Sau3AI GATC 3 cut(s) 168, 222, 411
Sau96I GGNCC 4 cut(s) 127, 283, 300, 586
SchI GAGTC 2 cut(s) 289, 378
ScrFI CCNGG 4 cut(s) 29, 99, 100, 179
SduI GDGCHC 5 cut(s) 219, 357, 366, 540, 579
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 1 cut(s) 590
SfoI GGCGCC 1 cut(s) 104
Sfr303I CCGCGG 2 cut(s) 73, 79
SgrBI CCGCGG 2 cut(s) 73, 79
SinI GGWCC 3 cut(s) 127, 283, 586
SmaI CCCGGG 1 cut(s) 100
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 558, 710
SspDI GGCGCC 1 cut(s) 102
SspMI CTAG 1 cut(s) 820
StyD4I CCNGG 4 cut(s) 27, 97, 98, 177
TaaI ACNGT 3 cut(s) 487, 526, 695
TaiI ACGT 2 cut(s) 360, 406
TaqI TCGA 1 cut(s) 228
TasI AATT 2 cut(s) 558, 710
TauI GCSGC 5 cut(s) 75, 78, 96, 108, 150
TfiI GAWTC 1 cut(s) 436
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 2 cut(s) 138, 400
TseFI GTSAC 3 cut(s) 133, 499, 520
TseI GCWGC 2 cut(s) 378, 566
Tsp45I GTSAC 3 cut(s) 133, 499, 520
TspDTI ATGAA 1 cut(s) 284
TspMI CCCGGG 1 cut(s) 98
TspRI CASTG 2 cut(s) 138, 400
VpaK11BI GGWCC 3 cut(s) 127, 283, 586
XagI CCTNNNNNAGG 1 cut(s) 155
XapI RAATTY 1 cut(s) 710
XmaI CCCGGG 1 cut(s) 98
XspI CTAG 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.