Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Reverse (-)

82970931 .. 82972237

Gene Structure 1307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG485400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCTTCTTTGTCGTTGAGATCTTCGTCAACGATAACAGCAGCGGCCGCTGTGAACAATGGCGGAGCTGGAAGGTTCGAGAGGCAGCAACTCCATCCCGCTCGGCAAACGACTTCGTCTGTTCGATTCAAGCCGGCGTCTTCCTCGACTTTATGGATGAAAGAGGAGGCGGCGCCACTGGCGACCGTGGAGGCTTCGGCTGCGGAATCAGAGGCTTCAAGGTCTTTGTCGTCGTCGTCGACAGCAAAAGCCACGTCGGACTCGGCATCAAGTGCAGCAAGGAGGTTGCTATTGCTATTCGTGGAGCCATTATTGTGGCTAAGCTGGGGTCTACCAAGACTCTCGAAACTTTGTCAAGGAATAATGATTGAGCTATTTAAAGTGAAGGAAAAGCAGAGGGAGCTTGCTGAAAATGCCAAAGGAAAGTCACTGGTTAAGAAGCAAAGTTCTGGACAATTACAAAGTTCTCGTTTGAAGTTGCTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

162

Amino Acids

17.39

Weight (kDa)

10.43

Isoelectric Point (pI)

60.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	172
AccBSI	CCGCTC	1 cut(s)	101
AccI	GTMKAC	2 cut(s)	239, 331
AciI	CCGC	6 cut(s)	44, 48, 63, 99, 170, 203
AcoI	YGGCCR	1 cut(s)	45
AcyI	GRCGYC	2 cut(s)	137, 173
AgsI	TTSAA	3 cut(s)	130, 219, 475
AjiI	CACGTC	1 cut(s)	255
AluBI	AGCT	4 cut(s)	68, 324, 373, 403
AluI	AGCT	4 cut(s)	68, 324, 373, 403
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	4 cut(s)	41, 85, 200, 275
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspLEI	GCGC	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	4 cut(s)	53, 97, 187, 287
BccI	CCATC	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	176
BglII	AGATCT	1 cut(s)	20
BisI	GCNGC	7 cut(s)	42, 45, 48, 86, 171, 201, 276
BlpI	GCTNAGC	1 cut(s)	320
BlsI	GCNGC	7 cut(s)	43, 46, 49, 87, 172, 202, 277
BmgBI	CACGTC	1 cut(s)	255
BmiI	GGNNCC	2 cut(s)	174, 306
BmsI	GCATC	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	132
Bpu1102I	GCTNAGC	1 cut(s)	320
BsaHI	GRCGYC	2 cut(s)	137, 173
BsaJI	CCNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	183, 435
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	94, 162
BseNI	ACTGG	2 cut(s)	183, 435
BseRI	GAGGAG	1 cut(s)	179
BseX3I	CGGCCG	1 cut(s)	45
BseXI	GCAGC	4 cut(s)	53, 97, 187, 287
BseYI	CCCAGC	1 cut(s)	324
BsgI	GTGCAG	1 cut(s)	294
Bsh1285I	CGRYCG	2 cut(s)	48, 186
BshFI	GGCC	1 cut(s)	47
BshNI	GGYRCC	1 cut(s)	172
BsiEI	CGRYCG	2 cut(s)	48, 186
BsiSI	CCGG	1 cut(s)	134
BsnI	GGCC	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	20
Bsp1720I	GCTNAGC	1 cut(s)	320
BspACI	CCGC	6 cut(s)	44, 48, 63, 99, 170, 203
BspANI	GGCC	1 cut(s)	47
BspLI	GGNNCC	2 cut(s)	174, 306
BspT107I	GGYRCC	1 cut(s)	172
BsrBI	CCGCTC	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	183, 435
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	20
BssNI	GRCGYC	2 cut(s)	137, 173
Bst4CI	ACNGT	1 cut(s)	187
BstACI	GRCGYC	2 cut(s)	137, 173
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	135, 405
BstDEI	CTNAG	1 cut(s)	320
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	2 cut(s)	94, 162
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	20
BstMCI	CGRYCG	2 cut(s)	48, 186
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 179, 200, 272, 400, 413
BstV1I	GCAGC	4 cut(s)	53, 97, 187, 287
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	20
BstXI	CCANNNNNNTGG	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	20
BstZI	CGGCCG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	186
BtrI	CACGTC	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	94, 162
BtsIMutI	CAGTG	2 cut(s)	176, 428
Cac8I	GCNNGC	2 cut(s)	135, 405
CciNI	GCGGCCGC	1 cut(s)	45
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	133
CseI	GACGC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	320
DinI	GGCGCC	1 cut(s)	174
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
DraI	TTTAAA	1 cut(s)	379
EaeI	YGGCCR	1 cut(s)	45
EagI	CGGCCG	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	45
Eco52I	CGGCCG	1 cut(s)	45
EgeI	GGCGCC	1 cut(s)	174
EheI	GGCGCC	1 cut(s)	174
FaiI	YATR	1 cut(s)	154
FauI	CCCGC	1 cut(s)	106
FblI	GTMKAC	2 cut(s)	239, 331
Fnu4HI	GCNGC	7 cut(s)	42, 45, 48, 86, 171, 201, 276
FokI	GGATG	2 cut(s)	81, 169
Fsp4HI	GCNGC	7 cut(s)	42, 45, 48, 86, 171, 201, 276
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	7 cut(s)	42, 45, 48, 86, 171, 201, 276
GsaI	CCCAGC	1 cut(s)	328
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	175
Hin1I	GRCGYC	2 cut(s)	137, 173
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	2 cut(s)	30, 240
HindII	GTYRAC	2 cut(s)	30, 240
HinfI	GANTC	4 cut(s)	126, 206, 260, 339
HpaII	CCGG	1 cut(s)	134
Hpy166II	GTNNAC	4 cut(s)	30, 55, 240, 332
Hpy188I	TCNGA	2 cut(s)	211, 259
Hpy188III	TCNNGA	3 cut(s)	79, 343, 450
Hpy8I	GTNNAC	4 cut(s)	30, 55, 240, 332
Hpy99I	CGWCG	4 cut(s)	235, 238, 241, 259
HpyAV	CCTTC	2 cut(s)	66, 379
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	1 cut(s)	275
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 179, 200, 272, 400, 413
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	254
Hsp92I	GRCGYC	2 cut(s)	137, 173
HspAI	GCGC	1 cut(s)	173
KasI	GGCGCC	1 cut(s)	172
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	3 cut(s)	65, 304, 400
LpnPI	CCDG	6 cut(s)	54, 147, 164, 310, 416, 435
Lsp1109I	GCAGC	4 cut(s)	53, 97, 187, 287
LweI	GCATC	1 cut(s)	275
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	426
MalI	GATC	1 cut(s)	22
MbiI	CCGCTC	1 cut(s)	101
MboI	GATC	1 cut(s)	20
MboII	GAAGA	2 cut(s)	15, 132
MflI	RGATCY	1 cut(s)	20
MluCI	AATT	1 cut(s)	455
Mly113I	GGCGCC	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	254, 333
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	8 cut(s)	75, 154, 157, 160, 184, 205, 276, 390
MroNI	GCCGGC	1 cut(s)	133
MseI	TTAA	2 cut(s)	378, 435
MslI	CAYNNNNRTG	1 cut(s)	313
MspA1I	CMGCKG	2 cut(s)	44, 50
MspI	CCGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	6 cut(s)	47, 179, 200, 272, 400, 413
NaeI	GCCGGC	1 cut(s)	135
NarI	GGCGCC	1 cut(s)	173
NdeII	GATC	1 cut(s)	20
NgoMIV	GCCGGC	1 cut(s)	133
NlaIV	GGNNCC	2 cut(s)	174, 306
NmeAIII	GCCGAG	2 cut(s)	82, 242
NmuCI	GTSAC	1 cut(s)	426
NotI	GCGGCCGC	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PdiI	GCCGGC	1 cut(s)	135
PfeI	GAWTC	2 cut(s)	126, 206
PflFI	GACNNNGTC	1 cut(s)	115
PkrI	GCNGC	7 cut(s)	43, 46, 49, 87, 172, 202, 277
PleI	GAGTC	2 cut(s)	254, 333
PluTI	GGCGCC	1 cut(s)	176
PpsI	GAGTC	2 cut(s)	254, 333
PspFI	CCCAGC	1 cut(s)	324
PspN4I	GGNNCC	2 cut(s)	174, 306
PsuI	RGATCY	1 cut(s)	20
PsyI	GACNNNGTC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	313
SalI	GTCGAC	1 cut(s)	238
SaqAI	TTAA	2 cut(s)	378, 435
SatI	GCNGC	7 cut(s)	42, 45, 48, 86, 171, 201, 276
Sau3AI	GATC	1 cut(s)	20
SchI	GAGTC	2 cut(s)	254, 333
SetI	ASST	8 cut(s)	70, 77, 224, 257, 287, 326, 375, 405
SfaNI	GCATC	1 cut(s)	275
SfoI	GGCGCC	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	313
Sse9I	AATT	1 cut(s)	455
SsiI	CCGC	6 cut(s)	44, 48, 63, 99, 170, 203
SspDI	GGCGCC	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	5 cut(s)	78, 124, 146, 239, 344
TasI	AATT	1 cut(s)	455
TauI	GCSGC	3 cut(s)	47, 50, 173
TfiI	GAWTC	2 cut(s)	126, 206
Tru1I	TTAA	2 cut(s)	378, 435
Tru9I	TTAA	2 cut(s)	378, 435
TscAI	CASTG	2 cut(s)	183, 435
TseFI	GTSAC	1 cut(s)	426
TseI	GCWGC	4 cut(s)	41, 85, 200, 275
Tsp45I	GTSAC	1 cut(s)	426
TspDTI	ATGAA	1 cut(s)	173
TspRI	CASTG	2 cut(s)	183, 435
Tth111I	GACNNNGTC	1 cut(s)	115
XmiI	GTMKAC	2 cut(s)	239, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.