Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Reverse (-)

21279596 .. 21281064

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCGGAACGTGGTGTCGAACGTGGTGGAGATCGCGGCGATTTCGGACGTGGATTCGGTGGTCGCGGCGGTGGAAGAGGTGGTCCGAGAGGTCGTGGTCGCCGTGCAGGTCGTGCTCCAGAGGAGGAGAAATGGGTGCCAGTGACTAAGCTTGGTCGTCTCGTAAAGGAAGGTAAGATCACAAAGATTGAGCAGATCTACCTCCATTCTCTCCCAGTCAAGGAGTACCAGATCATAGATTTACTCGTCGGTCCTTCATTGAAAGACGAAGTGATGAAAATCATGCCGGTTCAAAAACAAACCAGAGCCGGTCAGAGAACGAGATTCAAGGCCTTCATCGTCGTCGGAGATAGTAACGGTCACGTCGGATTAGGAGTCAAATGCTCCAAGGAAGTTGCGACGGCGATCAGAGGCGCGATCATTCTCGCGAAATTGTCTGTGGTTCCGATACGAAGAGGTTATTGGGGTAACAAGATTGGAAAACCACATACGGTTCCGTGTAAGGTAACCGGGAAATGTGGATCTGTTACTGTACGTATGGTTCCAGCTCCGAGAGGTTCTGGTATTGTGGCGGCTAGAGTTCCTAAGAAGGTTCTTCAATTCGCTGGAATTGATGATGTCTTTACTTCTTCTAGAGGATCCACCAAAACTCTTGGAAACTTCGTCAAGGCAACATTTGATTGTCTGCAGAAGACATACGGATTCCTTACACCGGAATTCTGGAAAGAGACGAGATTCTCAAAATCACCATACCAAGAGCACACTGATTTCTTGCTTATACCTCCTGGCGTCAAGATCAGCGAGGTTGTTGTAGACAAAAGCGTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

276

Amino Acids

30.12

Weight (kDa)

10.19

Isoelectric Point (pI)

25.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	87 - 151	2.9e-29	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	171 - 243	2e-25	Ribosomal protein S5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	136
AccI	GTMKAC	1 cut(s)	813
AccII	CGCG	4 cut(s)	36, 66, 416, 428
AciI	CCGC	5 cut(s)	5, 36, 66, 69, 572
AclWI	GGATC	3 cut(s)	529, 633, 646
AcsI	RAATTY	1 cut(s)	716
AcyI	GRCGYC	1 cut(s)	789
AfaI	GTAC	2 cut(s)	227, 534
AfiI	CCNNNNNNNGG	2 cut(s)	220, 712
AgsI	TTSAA	4 cut(s)	262, 293, 328, 599
AjiI	CACGTC	2 cut(s)	50, 364
AjnI	CCWGG	1 cut(s)	784
AjuI	GAANNNNNNNTTGG	2 cut(s)	445, 477
AluBI	AGCT	2 cut(s)	151, 548
AluI	AGCT	2 cut(s)	151, 548
Alw21I	GWGCWC	2 cut(s)	118, 762
Alw26I	GTCTC	2 cut(s)	164, 722
AlwI	GGATC	3 cut(s)	529, 633, 646
AoxI	GGCC	1 cut(s)	330
ApoI	RAATTY	1 cut(s)	716
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	2 cut(s)	83, 251
AsuC2I	CCSGG	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	738
AvaII	GGWCC	2 cut(s)	83, 251
BamHI	GGATCC	1 cut(s)	638
BanI	GGYRCC	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	698
Bbv12I	GWGCWC	2 cut(s)	118, 762
BceAI	ACGGC	2 cut(s)	87, 417
BciT130I	CCWGG	1 cut(s)	786
BcnI	CCSGG	1 cut(s)	511
BcoDI	GTCTC	2 cut(s)	164, 722
BfaI	CTAG	2 cut(s)	576, 633
BfmI	CTRYAG	1 cut(s)	686
BfuAI	ACCTGC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	195
BisI	GCNGC	3 cut(s)	37, 67, 573
BlsI	GCNGC	3 cut(s)	38, 68, 574
Bme1390I	CCNGG	2 cut(s)	511, 786
Bme18I	GGWCC	2 cut(s)	83, 251
BmgBI	CACGTC	2 cut(s)	50, 364
BmgT120I	GGNCC	2 cut(s)	83, 251
BmiI	GGNNCC	5 cut(s)	138, 444, 495, 543, 640
BmrFI	CCNGG	2 cut(s)	511, 786
BmrI	ACTGGG	1 cut(s)	209
BmuI	ACTGGG	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	698
BpmI	CTGGAG	1 cut(s)	102
BpuMI	CCSGG	1 cut(s)	511
BsaAI	YACGTR	1 cut(s)	536
BsaBI	GATNNNNATC	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	789
BsaJI	CCNNGG	1 cut(s)	387
BsaWI	WCCGGW	1 cut(s)	712
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 712
Bse118I	RCCGGY	2 cut(s)	286, 308
Bse1I	ACTGG	2 cut(s)	140, 215
Bse8I	GATNNNNATC	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	786
BseDI	CCNNGG	1 cut(s)	387
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	2 cut(s)	220, 712
BseNI	ACTGG	2 cut(s)	140, 215
BseRI	GAGGAG	2 cut(s)	137, 140
BsgI	GTGCAG	1 cut(s)	126
Bsh1236I	CGCG	4 cut(s)	36, 66, 416, 428
BshFI	GGCC	1 cut(s)	332
BshNI	GGYRCC	1 cut(s)	136
BsiHKAI	GWGCWC	2 cut(s)	118, 762
BsiSI	CCGG	4 cut(s)	287, 309, 510, 713
BslI	CCNNNNNNNGG	2 cut(s)	220, 712
BsmAI	GTCTC	2 cut(s)	164, 722
BsmBI	CGTCTC	2 cut(s)	164, 722
BsnI	GGCC	1 cut(s)	332
Bsp1286I	GDGCHC	2 cut(s)	118, 762
Bsp143I	GATC	9 cut(s)	31, 177, 195, 231, 405, 417, 521, 638, 795
Bsp68I	TCGCGA	1 cut(s)	428
BspACI	CCGC	5 cut(s)	5, 36, 66, 69, 572
BspANI	GGCC	1 cut(s)	332
BspFNI	CGCG	4 cut(s)	36, 66, 416, 428
BspLI	GGNNCC	5 cut(s)	138, 444, 495, 543, 640
BspMAI	CTGCAG	1 cut(s)	690
BspMI	ACCTGC	1 cut(s)	98
BspPI	GGATC	3 cut(s)	529, 633, 646
BspT107I	GGYRCC	1 cut(s)	136
BsrFI	RCCGGY	2 cut(s)	286, 308
BsrI	ACTGG	2 cut(s)	140, 215
BssAI	RCCGGY	2 cut(s)	286, 308
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	9 cut(s)	31, 177, 195, 231, 405, 417, 521, 638, 795
BssNI	GRCGYC	1 cut(s)	789
BssT1I	CCWWGG	1 cut(s)	387
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	3 cut(s)	359, 493, 532
Bst6I	CTCTTC	2 cut(s)	70, 448
BstACI	GRCGYC	1 cut(s)	789
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	536
BstDEI	CTNAG	2 cut(s)	147, 585
BstEII	GGTNACC	1 cut(s)	505
BstFNI	CGCG	4 cut(s)	36, 66, 416, 428
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	9 cut(s)	34, 180, 198, 234, 408, 420, 524, 641, 798
BstMAI	GTCTC	2 cut(s)	164, 722
BstMBI	GATC	9 cut(s)	31, 177, 195, 231, 405, 417, 521, 638, 795
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	786
BstPI	GGTNACC	1 cut(s)	505
BstSCI	CCNGG	2 cut(s)	509, 784
BstSFI	CTRYAG	1 cut(s)	686
BstSNI	TACGTA	1 cut(s)	536
BstUI	CGCG	4 cut(s)	36, 66, 416, 428
BstV2I	GAAGAC	1 cut(s)	698
BstX2I	RGATCY	3 cut(s)	195, 521, 638
BstYI	RGATCY	3 cut(s)	195, 521, 638
BsuRI	GGCC	1 cut(s)	332
BtrI	CACGTC	2 cut(s)	50, 364
BtsIMutI	CAGTG	2 cut(s)	147, 762
BtuMI	TCGCGA	1 cut(s)	428
BveI	ACCTGC	1 cut(s)	98
CfoI	GCGC	1 cut(s)	416
Cfr10I	RCCGGY	2 cut(s)	286, 308
Cfr13I	GGNCC	2 cut(s)	83, 251
CseI	GACGC	1 cut(s)	778
Csp6I	GTAC	2 cut(s)	226, 533
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	5 cut(s)	151, 308, 332, 548, 575
CviKI_1	RGCY	5 cut(s)	151, 308, 332, 548, 575
CviQI	GTAC	2 cut(s)	226, 533
DdeI	CTNAG	2 cut(s)	147, 585
DpnI	GATC	9 cut(s)	33, 179, 197, 233, 407, 419, 523, 640, 797
DpnII	GATC	9 cut(s)	31, 177, 195, 231, 405, 417, 521, 638, 795
Eam1104I	CTCTTC	2 cut(s)	70, 448
EarI	CTCTTC	2 cut(s)	70, 448
EciI	GGCGGA	1 cut(s)	20
Eco105I	TACGTA	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	387
Eco147I	AGGCCT	1 cut(s)	332
Eco47I	GGWCC	2 cut(s)	83, 251
Eco91I	GGTNACC	1 cut(s)	505
EcoO65I	GGTNACC	1 cut(s)	505
EcoRI	GAATTC	1 cut(s)	716
EcoRII	CCWGG	1 cut(s)	784
EcoT14I	CCWWGG	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	387
Esp3I	CGTCTC	2 cut(s)	164, 722
FaeI	CATG	1 cut(s)	286
FaiI	YATR	7 cut(s)	236, 284, 489, 539, 697, 751, 779
FatI	CATG	1 cut(s)	282
FblI	GTMKAC	1 cut(s)	813
Fnu4HI	GCNGC	3 cut(s)	37, 67, 573
Fsp4HI	GCNGC	3 cut(s)	37, 67, 573
FspBI	CTAG	2 cut(s)	576, 633
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	3 cut(s)	37, 67, 573
GsuI	CTGGAG	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	4 cut(s)	287, 309, 510, 713
HgaI	GACGC	1 cut(s)	778
HhaI	GCGC	1 cut(s)	416
Hin1I	GRCGYC	1 cut(s)	789
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	5 cut(s)	54, 324, 375, 702, 735
HpaII	CCGG	4 cut(s)	287, 309, 510, 713
HphI	GGTGA	1 cut(s)	738
Hpy166II	GTNNAC	1 cut(s)	814
Hpy188I	TCNGA	8 cut(s)	47, 87, 315, 347, 368, 410, 447, 552
Hpy188III	TCNNGA	5 cut(s)	119, 427, 633, 721, 793
Hpy8I	GTNNAC	1 cut(s)	814
Hpy99I	CGWCG	5 cut(s)	251, 344, 347, 368, 403
HpyAV	CCTTC	4 cut(s)	164, 264, 343, 583
HpyCH4III	ACNGT	3 cut(s)	359, 493, 532
HpyCH4IV	ACGT	5 cut(s)	10, 22, 49, 363, 535
HpyCH4V	TGCA	2 cut(s)	107, 688
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	2 cut(s)	147, 585
HpySE526I	ACGT	5 cut(s)	10, 22, 49, 363, 535
Hsp92I	GRCGYC	1 cut(s)	789
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	1 cut(s)	414
Kzo9I	GATC	9 cut(s)	31, 177, 195, 231, 405, 417, 521, 638, 795
LmnI	GCTCC	3 cut(s)	121, 389, 553
MaeI	CTAG	2 cut(s)	576, 633
MaeII	ACGT	5 cut(s)	10, 22, 49, 363, 535
MaeIII	GTNAC	6 cut(s)	142, 353, 359, 467, 505, 526
MalI	GATC	9 cut(s)	33, 179, 197, 233, 407, 419, 523, 640, 797
MboI	GATC	9 cut(s)	31, 177, 195, 231, 405, 417, 521, 638, 795
MboII	GAAGA	5 cut(s)	87, 465, 587, 621, 703
MflI	RGATCY	3 cut(s)	195, 521, 638
MhlI	GDGCHC	2 cut(s)	118, 762
MluCI	AATT	4 cut(s)	431, 599, 609, 716
MlyI	GAGTC	1 cut(s)	384
MmeI	TCCRAC	2 cut(s)	325, 346
MspI	CCGG	4 cut(s)	287, 309, 510, 713
MspR9I	CCNGG	2 cut(s)	511, 786
MvaI	CCWGG	1 cut(s)	786
MvnI	CGCG	4 cut(s)	36, 66, 416, 428
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	1 cut(s)	511
NdeII	GATC	9 cut(s)	31, 177, 195, 231, 405, 417, 521, 638, 795
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	5 cut(s)	138, 444, 495, 543, 640
NmuCI	GTSAC	2 cut(s)	142, 359
NruI	TCGCGA	1 cut(s)	428
PceI	AGGCCT	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PfeI	GAWTC	4 cut(s)	54, 324, 702, 735
PkrI	GCNGC	3 cut(s)	38, 68, 574
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
Ppu21I	YACGTR	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	784
PspEI	GGTNACC	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	784
PspN4I	GGNNCC	5 cut(s)	138, 444, 495, 543, 640
PspPI	GGNCC	2 cut(s)	83, 251
PsrI	GAACNNNNNNTAC	2 cut(s)	525, 557
PstI	CTGCAG	1 cut(s)	690
PsuI	RGATCY	3 cut(s)	195, 521, 638
RruI	TCGCGA	1 cut(s)	428
RsaI	GTAC	2 cut(s)	227, 534
RsaNI	GTAC	2 cut(s)	226, 533
SatI	GCNGC	3 cut(s)	37, 67, 573
Sau3AI	GATC	9 cut(s)	31, 177, 195, 231, 405, 417, 521, 638, 795
Sau96I	GGNCC	2 cut(s)	83, 251
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	2 cut(s)	511, 786
SduI	GDGCHC	2 cut(s)	118, 762
SfcI	CTRYAG	1 cut(s)	686
SinI	GGWCC	2 cut(s)	83, 251
SnaBI	TACGTA	1 cut(s)	536
Sse9I	AATT	4 cut(s)	431, 599, 609, 716
SseBI	AGGCCT	1 cut(s)	332
SsiI	CCGC	5 cut(s)	5, 36, 66, 69, 572
SspMI	CTAG	2 cut(s)	576, 633
StuI	AGGCCT	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	509, 784
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	3 cut(s)	359, 493, 532
TaiI	ACGT	5 cut(s)	13, 25, 52, 366, 538
TaqI	TCGA	1 cut(s)	18
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	4 cut(s)	431, 599, 609, 716
TauI	GCSGC	3 cut(s)	39, 69, 575
TfiI	GAWTC	4 cut(s)	54, 324, 702, 735
TscAI	CASTG	2 cut(s)	147, 769
TseFI	GTSAC	2 cut(s)	142, 359
Tsp45I	GTSAC	2 cut(s)	142, 359
TspDTI	ATGAA	3 cut(s)	246, 290, 325
TspGWI	ACGGA	2 cut(s)	486, 714
TspRI	CASTG	2 cut(s)	147, 769
VpaK11BI	GGWCC	2 cut(s)	83, 251
XapI	RAATTY	1 cut(s)	716
XbaI	TCTAGA	1 cut(s)	632
XmiI	GTMKAC	1 cut(s)	813
XspI	CTAG	2 cut(s)	576, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.