Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001772.1

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Reverse (-)

249540 .. 252390

Gene Structure 2851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001772.1_g000057.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atggcaaaaatccccagcgaggtggagctccattggatacccgcctctaatgaggggagaattcggggacaaatagggaatggggatggggatccccaatccccgctatctaagattggggatggggcggggatgatcttcgttgaccataacggcagcgaccgctgtgaacaatggcagagctggaaggttcgagaggcagcaactccatcccgttcggcaaaagactttgtctgttcgattcaagccggcgtcttcctcgactttatggatgaaagcggaggcggcgccactggcgagcgtggaggcttcggcagcggaatcggaggcttcaaggtctttgtcgtcggcgacagcaaaagccatgtcggactcggcgtcaagtgcagcaaggaggttgctactgctattcgtggagccattactgtggctaagctgtgggtgattcctgtgaggagggccggcgtcttcctcgactttatggatgaaagcgaaggcggcgccactggcgagcgtggaggcttcggcagcggaatcggaggcttcaaggtctttgtcgtcggcgacagcaaaagccatgtcggactcggcgtcaagtgcagcaaggaggttgctactgctattcgtggagccattattgtggctaagctgtgggtgattcctgtgaggaggggttacaagatcggaaagccccacaccaagcattgcaaggtcaccggaaagtgtggctctgttatagtggggatggtgcttgctcctcgtggttctagtattgtggtggctagggttcccaagaaggtgttccaatttgttggtattgatgatgtgttcacttcatctagggggtctaccaagactctcgaaactttgtcaaggaattttaacttctgttttgtagtcgtgttggttgcttcaacaagaactatgactggtgacctttctaatccattgctggttaaacctcttcaaccggttgctgctccagtggctccagtagctcagaaatctgatgcacctgatcgtcttaataatttagttggcattgggtatcaatcatttgagaatgctgttttgaagaaactcgcacagatggtatatgtcagaaattgctggagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

372

Amino Acids

39.39

Weight (kDa)

9.56

Isoelectric Point (pI)

21.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	287, 500
AccI	GTMKAC	1 cut(s)	848
AciI	CCGC	9 cut(s)	42, 104, 128, 163, 279, 285, 318, 498, 531
AclWI	GGATC	2 cut(s)	86, 99
AcsI	RAATTY	2 cut(s)	60, 877
AcyI	GRCGYC	6 cut(s)	252, 288, 378, 465, 501, 591
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgeI	ACCGGT	1 cut(s)	970
AgsI	TTSAA	6 cut(s)	245, 334, 547, 915, 968, 1075
AhdI	GACNNNNNGTC	2 cut(s)	377, 590
AjuI	GAANNNNNNNTTGG	2 cut(s)	785, 817
AluBI	AGCT	6 cut(s)	28, 183, 436, 649, 998, 1116
AluI	AGCT	6 cut(s)	28, 183, 436, 649, 998, 1116
Alw21I	GWGCWC	1 cut(s)	30
AlwI	GGATC	2 cut(s)	86, 99
AoxI	GGCC	1 cut(s)	459
ApeKI	GCWGC	7 cut(s)	156, 200, 315, 387, 528, 600, 977
ApoI	RAATTY	2 cut(s)	60, 877
ArsI	GACNNNNNNTTYG	4 cut(s)	351, 383, 564, 596
AsiGI	ACCGGT	1 cut(s)	970
Asp700I	GAANNNNTTC	1 cut(s)	800
AspLEI	GCGC	2 cut(s)	290, 503
AspS9I	GGNCC	1 cut(s)	459
AsuHPI	GGTGA	4 cut(s)	454, 667, 706, 944
BamHI	GGATCC	1 cut(s)	91
BanI	GGYRCC	2 cut(s)	287, 500
BanII	GRGCYC	1 cut(s)	30
BauI	CACGAG	1 cut(s)	759
BbsI	GAAGAC	2 cut(s)	247, 460
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	7 cut(s)	168, 212, 327, 399, 540, 612, 964
BccI	CCATC	5 cut(s)	80, 116, 217, 739, 1084
BceAI	ACGGC	1 cut(s)	169
BcgI	CGANNNNNNTGC	4 cut(s)	304, 338, 517, 551
BciVI	GTATCC	1 cut(s)	30
BfaI	CTAG	3 cut(s)	768, 783, 840
BfoI	RGCGCY	2 cut(s)	291, 504
BfuI	GTATCC	1 cut(s)	30
BisI	GCNGC	9 cut(s)	157, 201, 286, 316, 388, 499, 529, 601, 978
BlpI	GCTNAGC	2 cut(s)	432, 645
BlsI	GCNGC	9 cut(s)	158, 202, 287, 317, 389, 500, 530, 602, 979
BmeRI	GACNNNNNGTC	2 cut(s)	377, 590
BmgT120I	GGNCC	1 cut(s)	459
BmiI	GGNNCC	7 cut(s)	93, 289, 418, 502, 631, 789, 990
BmsI	GCATC	1 cut(s)	1000
BpiI	GAAGAC	2 cut(s)	247, 460
BpmI	CTGGAG	2 cut(s)	966, 975
Bpu1102I	GCTNAGC	2 cut(s)	432, 645
BsaBI	GATNNNNATC	1 cut(s)	90
BsaHI	GRCGYC	6 cut(s)	252, 288, 378, 465, 501, 591
BsaWI	WCCGGW	2 cut(s)	716, 970
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse118I	RCCGGY	3 cut(s)	248, 461, 970
Bse1I	ACTGG	5 cut(s)	298, 511, 934, 983, 992
Bse3DI	GCAATG	2 cut(s)	703, 947
Bse8I	GATNNNNATC	1 cut(s)	90
BseGI	GGATG	7 cut(s)	91, 127, 138, 209, 277, 490, 750
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMI	GCAATG	2 cut(s)	703, 947
BseMII	CTCAG	1 cut(s)	1013
BseNI	ACTGG	5 cut(s)	298, 511, 934, 983, 992
BseRI	GAGGAG	3 cut(s)	469, 682, 747
BseXI	GCAGC	7 cut(s)	168, 212, 327, 399, 540, 612, 964
BseYI	CCCAGC	1 cut(s)	14
BsgI	GTGCAG	2 cut(s)	406, 619
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	461
BshNI	GGYRCC	2 cut(s)	287, 500
BshTI	ACCGGT	1 cut(s)	970
BsiEI	CGRYCG	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	4 cut(s)	249, 462, 717, 971
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	81
BsmI	GAATGC	1 cut(s)	1069
BsnI	GGCC	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	4 cut(s)	91, 135, 681, 1018
Bsp1720I	GCTNAGC	2 cut(s)	432, 645
BspACI	CCGC	9 cut(s)	42, 104, 128, 163, 279, 285, 318, 498, 531
BspANI	GGCC	1 cut(s)	461
BspCNI	CTCAG	1 cut(s)	1012
BspLI	GGNNCC	7 cut(s)	93, 289, 418, 502, 631, 789, 990
BspPI	GGATC	2 cut(s)	86, 99
BspT107I	GGYRCC	2 cut(s)	287, 500
BsrDI	GCAATG	2 cut(s)	703, 947
BsrFI	RCCGGY	3 cut(s)	248, 461, 970
BsrI	ACTGG	5 cut(s)	298, 511, 934, 983, 992
BssAI	RCCGGY	3 cut(s)	248, 461, 970
BssMI	GATC	4 cut(s)	91, 135, 681, 1018
BssNI	GRCGYC	6 cut(s)	252, 288, 378, 465, 501, 591
BssSI	CACGAG	1 cut(s)	759
Bst2BI	CACGAG	1 cut(s)	759
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	969
BstACI	GRCGYC	6 cut(s)	252, 288, 378, 465, 501, 591
BstC8I	GCNNGC	5 cut(s)	250, 299, 463, 512, 753
BstDEI	CTNAG	4 cut(s)	111, 432, 645, 999
BstEII	GGTNACC	2 cut(s)	712, 932
BstF5I	GGATG	7 cut(s)	91, 127, 138, 209, 277, 490, 750
BstH2I	RGCGCY	2 cut(s)	291, 504
BstHHI	GCGC	2 cut(s)	290, 503
BstKTI	GATC	4 cut(s)	94, 138, 684, 1021
BstMBI	GATC	4 cut(s)	91, 135, 681, 1018
BstMCI	CGRYCG	1 cut(s)	163
BstPI	GGTNACC	2 cut(s)	712, 932
BstV1I	GCAGC	7 cut(s)	168, 212, 327, 399, 540, 612, 964
BstV2I	GAAGAC	2 cut(s)	247, 460
BstX2I	RGATCY	1 cut(s)	91
BstXI	CCANNNNNNTGG	4 cut(s)	22, 427, 640, 812
BstYI	RGATCY	1 cut(s)	91
BsuI	GTATCC	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	461
BtsCI	GGATG	7 cut(s)	91, 127, 138, 209, 277, 490, 750
BtsIMutI	CAGTG	3 cut(s)	291, 504, 990
Cac8I	GCNNGC	5 cut(s)	250, 299, 463, 512, 753
CfoI	GCGC	2 cut(s)	290, 503
Cfr10I	RCCGGY	3 cut(s)	248, 461, 970
Cfr13I	GGNCC	1 cut(s)	459
CseI	GACGC	4 cut(s)	241, 367, 454, 580
CspAI	ACCGGT	1 cut(s)	970
CviAII	CATG	2 cut(s)	365, 578
DdeI	CTNAG	4 cut(s)	111, 432, 645, 999
DinI	GGCGCC	2 cut(s)	289, 502
DpnI	GATC	4 cut(s)	93, 137, 683, 1020
DpnII	GATC	4 cut(s)	91, 135, 681, 1018
DriI	GACNNNNNGTC	2 cut(s)	377, 590
Eam1104I	CTCTTC	1 cut(s)	969
Eam1105I	GACNNNNNGTC	2 cut(s)	377, 590
EarI	CTCTTC	1 cut(s)	969
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	28
Eco91I	GGTNACC	2 cut(s)	712, 932
EcoICRI	GAGCTC	1 cut(s)	28
EcoO65I	GGTNACC	2 cut(s)	712, 932
EcoRI	GAATTC	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	30
EgeI	GGCGCC	2 cut(s)	289, 502
EheI	GGCGCC	2 cut(s)	289, 502
FaeI	CATG	2 cut(s)	368, 581
FaiI	YATR	9 cut(s)	150, 269, 366, 482, 579, 737, 926, 1096, 1098
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	2 cut(s)	364, 577
FauI	CCCGC	3 cut(s)	49, 111, 121
FblI	GTMKAC	1 cut(s)	848
Fnu4HI	GCNGC	9 cut(s)	157, 201, 286, 316, 388, 499, 529, 601, 978
FokI	GGATG	7 cut(s)	98, 134, 145, 196, 284, 497, 757
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	9 cut(s)	157, 201, 286, 316, 388, 499, 529, 601, 978
FspBI	CTAG	3 cut(s)	768, 783, 840
GlaI	GCGC	2 cut(s)	289, 502
GluI	GCNGC	9 cut(s)	157, 201, 286, 316, 388, 499, 529, 601, 978
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	2 cut(s)	966, 975
HaeII	RGCGCY	2 cut(s)	291, 504
HaeIII	GGCC	1 cut(s)	461
HapII	CCGG	4 cut(s)	249, 462, 717, 971
HgaI	GACGC	4 cut(s)	241, 367, 454, 580
HhaI	GCGC	2 cut(s)	290, 503
Hin1I	GRCGYC	6 cut(s)	252, 288, 378, 465, 501, 591
Hin1II	CATG	2 cut(s)	368, 581
Hin6I	GCGC	2 cut(s)	288, 501
HinP1I	GCGC	2 cut(s)	288, 501
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	8 cut(s)	241, 321, 372, 445, 534, 585, 658, 856
HpaII	CCGG	4 cut(s)	249, 462, 717, 971
HphI	GGTGA	4 cut(s)	454, 667, 706, 944
Hpy166II	GTNNAC	4 cut(s)	145, 170, 831, 849
Hpy188I	TCNGA	8 cut(s)	326, 371, 539, 584, 686, 1002, 1009, 1103
Hpy188III	TCNNGA	2 cut(s)	194, 860
Hpy8I	GTNNAC	4 cut(s)	145, 170, 831, 849
Hpy99I	CGWCG	2 cut(s)	350, 563
HpyAV	CCTTC	3 cut(s)	181, 488, 790
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	4 cut(s)	387, 600, 708, 1013
HpyF3I	CTNAG	4 cut(s)	111, 432, 645, 999
Hsp92I	GRCGYC	6 cut(s)	252, 288, 378, 465, 501, 591
Hsp92II	CATG	2 cut(s)	368, 581
HspAI	GCGC	2 cut(s)	288, 501
KasI	GGCGCC	2 cut(s)	287, 500
KroI	GCCGGC	2 cut(s)	248, 461
KroNI	GCCGGC	2 cut(s)	250, 463
Kzo9I	GATC	4 cut(s)	91, 135, 681, 1018
LmnI	GCTCC	8 cut(s)	25, 33, 416, 629, 760, 985, 994, 1113
Lsp1109I	GCAGC	7 cut(s)	168, 212, 327, 399, 540, 612, 964
LweI	GCATC	1 cut(s)	1000
MaeI	CTAG	3 cut(s)	768, 783, 840
MaeIII	GTNAC	3 cut(s)	674, 712, 932
MalI	GATC	4 cut(s)	93, 137, 683, 1020
MboI	GATC	4 cut(s)	91, 135, 681, 1018
MboII	GAAGA	5 cut(s)	130, 247, 460, 956, 1087
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	5 cut(s)	60, 806, 877, 1030, 1105
Mly113I	GGCGCC	2 cut(s)	288, 501
MlyI	GAGTC	3 cut(s)	366, 579, 850
MmeI	TCCRAC	2 cut(s)	349, 562
MroNI	GCCGGC	2 cut(s)	248, 461
MroXI	GAANNNNTTC	1 cut(s)	800
MseI	TTAA	3 cut(s)	882, 957, 1026
MslI	CAYNNNNRTG	2 cut(s)	425, 638
MspA1I	CMGCKG	3 cut(s)	165, 318, 531
MspI	CCGG	4 cut(s)	249, 462, 717, 971
Mva1269I	GAATGC	1 cut(s)	1069
NaeI	GCCGGC	2 cut(s)	250, 463
NarI	GGCGCC	2 cut(s)	288, 501
NdeII	GATC	4 cut(s)	91, 135, 681, 1018
NgoMIV	GCCGGC	2 cut(s)	248, 461
NlaIII	CATG	2 cut(s)	368, 581
NlaIV	GGNNCC	7 cut(s)	93, 289, 418, 502, 631, 789, 990
NmeAIII	GCCGAG	2 cut(s)	354, 567
NmuCI	GTSAC	2 cut(s)	712, 932
PcsI	WCGNNNNNNNCGW	2 cut(s)	375, 588
PctI	GAATGC	1 cut(s)	1069
PdiI	GCCGGC	2 cut(s)	250, 463
PdmI	GAANNNNTTC	1 cut(s)	800
PfeI	GAWTC	5 cut(s)	241, 321, 445, 534, 658
PflFI	GACNNNGTC	1 cut(s)	230
PinAI	ACCGGT	1 cut(s)	970
PkrI	GCNGC	9 cut(s)	158, 202, 287, 317, 389, 500, 530, 602, 979
PleI	GAGTC	3 cut(s)	366, 579, 850
PluTI	GGCGCC	2 cut(s)	291, 504
PpsI	GAGTC	3 cut(s)	366, 579, 850
Psp124BI	GAGCTC	1 cut(s)	30
PspEI	GGTNACC	2 cut(s)	712, 932
PspFI	CCCAGC	1 cut(s)	14
PspN4I	GGNNCC	7 cut(s)	93, 289, 418, 502, 631, 789, 990
PspPI	GGNCC	1 cut(s)	459
PsuI	RGATCY	1 cut(s)	91
PsyI	GACNNNGTC	1 cut(s)	230
RseI	CAYNNNNRTG	2 cut(s)	425, 638
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	3 cut(s)	882, 957, 1026
SatI	GCNGC	9 cut(s)	157, 201, 286, 316, 388, 499, 529, 601, 978
Sau3AI	GATC	4 cut(s)	91, 135, 681, 1018
Sau96I	GGNCC	1 cut(s)	459
SchI	GAGTC	3 cut(s)	366, 579, 850
SduI	GDGCHC	1 cut(s)	30
SfaNI	GCATC	1 cut(s)	1000
SfoI	GGCGCC	2 cut(s)	289, 502
SmiMI	CAYNNNNRTG	2 cut(s)	425, 638
Sse9I	AATT	5 cut(s)	60, 806, 877, 1030, 1105
SsiI	CCGC	9 cut(s)	42, 104, 128, 163, 279, 285, 318, 498, 531
SspDI	GGCGCC	2 cut(s)	287, 500
SspMI	CTAG	3 cut(s)	768, 783, 840
SstI	GAGCTC	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	427
TaqI	TCGA	5 cut(s)	193, 239, 261, 474, 861
TasI	AATT	5 cut(s)	60, 806, 877, 1030, 1105
TauI	GCSGC	2 cut(s)	288, 501
TfiI	GAWTC	5 cut(s)	241, 321, 445, 534, 658
Tru1I	TTAA	3 cut(s)	882, 957, 1026
Tru9I	TTAA	3 cut(s)	882, 957, 1026
TscAI	CASTG	3 cut(s)	298, 511, 990
TseFI	GTSAC	2 cut(s)	712, 932
TseI	GCWGC	7 cut(s)	156, 200, 315, 387, 528, 600, 977
Tsp45I	GTSAC	2 cut(s)	712, 932
TspDTI	ATGAA	3 cut(s)	288, 501, 825
TspRI	CASTG	3 cut(s)	298, 511, 990
Tth111I	GACNNNGTC	1 cut(s)	230
XapI	RAATTY	2 cut(s)	60, 877
XmiI	GTMKAC	1 cut(s)	848
XmnI	GAANNNNTTC	1 cut(s)	800
XspI	CTAG	3 cut(s)	768, 783, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.