Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Reverse (-)

7551980 .. 7557083

Gene Structure 5104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0044200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGGACATGGAAACCAGATCATAGGGGAAGATGCTGATGCAATTCATCTCCCAAATCCAATGATTGGGTTCTGGACTCTAGCTGATCTCTGTCAAATCCACAGAAGTCTTCCAGAGGCAGCCACAGGACCTCCTTATTTTTACTATGAGAATGTGGCATCAACTCCTAAAGGAGTTTGGAGCACAATATCCTGCTTTTTGTATGACATGAAGCCTGAGTTTGTTGATTCGAAATTTTTTTGCGCTGCTGCAAGAAAAAAGGGCTATGTTCACAATCTTCCAATTAAAAACAGATTTCCTCTCGTTCCCCTTCCACCACAAACTATATTTGGTGCATTTCCCATGACAAGGAGGTGGTGGCCTACTTGGGATGATCGGACAAAGCTAAATTGCTTACAGACTTGCATTGCTAGTGCAACAATTACTGAGAGGATCATGAAGGCTCTTAAAGACTATGACAAAGATGAAATCCCACCTGAAAGTGTCTGTTGCTATGTTCTGTACGAATGCCGCAAGTGGAATCTTGTTTGGTTGTCCCAGCATTTTGAATTTACATATGCTTATGGTTCATTGGCATTTAGATATTCTCTGCTATTAAATTCGCTCATGGGTCTGATTGCATCCGAATCTGAATACTGTCTCCTTTCGAGTTCTTCTGGGCTTGCTTATTCTGGATTTTGTTTAAAGTTGTGGTCTTTGGATGGAAATTGGAGGTTTCGAATTTCTGGAATATTGTCTCGATTCGATTCTTCTGGGCTCGGTTATTATTTTGGGAACAATGTGCTGTCGGACAGTTTAATTGTTTGCAATTCAGAAAGTGGAAGGAGGTTTTCTAAGTTTGGGATTTTAGTGATTGATTGGGAGAGGTTGAAGGGTGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

294

Amino Acids

33.51

Weight (kDa)

7.49

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	65
AciI	CCGC	1 cut(s)	511
AclWI	GGATC	1 cut(s)	440
AcsI	RAATTY	4 cut(s)	233, 548, 598, 720
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	2 cut(s)	65, 348
AgsI	TTSAA	2 cut(s)	548, 871
AluBI	AGCT	2 cut(s)	83, 385
AluI	AGCT	2 cut(s)	83, 385
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	2 cut(s)	644, 741
AlwI	GGATC	1 cut(s)	440
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	119, 245, 248
ApoI	RAATTY	4 cut(s)	233, 548, 598, 720
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	128
AsuII	TTCGAA	2 cut(s)	230, 718
AvaII	GGWCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	759
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	3 cut(s)	131, 232, 235
BccI	CCATC	1 cut(s)	695
BcoDI	GTCTC	2 cut(s)	644, 741
BfaI	CTAG	2 cut(s)	80, 411
BisI	GCNGC	4 cut(s)	120, 246, 249, 511
BlsI	GCNGC	4 cut(s)	121, 247, 250, 512
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	128
BmsI	GCATC	4 cut(s)	22, 28, 167, 629
BpiI	GAAGAC	1 cut(s)	101
Bpu14I	TTCGAA	2 cut(s)	230, 718
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 348
Bse3DI	GCAATG	1 cut(s)	405
BseGI	GGATG	3 cut(s)	376, 620, 706
BseLI	CCNNNNNNNGG	2 cut(s)	65, 348
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	207, 417
BseXI	GCAGC	3 cut(s)	131, 232, 235
BseYI	CCCAGC	1 cut(s)	537
BshFI	GGCC	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	185
BslFI	GGGAC	2 cut(s)	18, 520
BslI	CCNNNNNNNGG	2 cut(s)	65, 348
BsmAI	GTCTC	2 cut(s)	644, 741
BsmFI	GGGAC	2 cut(s)	18, 520
BsmI	GAATGC	1 cut(s)	512
BsnI	GGCC	1 cut(s)	361
Bsp119I	TTCGAA	2 cut(s)	230, 718
Bsp1286I	GDGCHC	2 cut(s)	185, 759
Bsp143I	GATC	4 cut(s)	18, 85, 373, 432
BspACI	CCGC	1 cut(s)	511
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	2 cut(s)	208, 418
BspHI	TCATGA	1 cut(s)	435
BspPI	GGATC	1 cut(s)	440
BspT104I	TTCGAA	2 cut(s)	230, 718
BsrDI	GCAATG	1 cut(s)	405
BssMI	GATC	4 cut(s)	18, 85, 373, 432
Bst4CI	ACNGT	2 cut(s)	638, 794
BstBI	TTCGAA	2 cut(s)	230, 718
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	3 cut(s)	216, 426, 834
BstF5I	GGATG	3 cut(s)	376, 620, 706
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	4 cut(s)	21, 88, 376, 435
BstMAI	GTCTC	2 cut(s)	644, 741
BstMBI	GATC	4 cut(s)	18, 85, 373, 432
BstV1I	GCAGC	3 cut(s)	131, 232, 235
BstV2I	GAAGAC	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	361
BtsCI	GGATG	3 cut(s)	376, 620, 706
Cac8I	GCNNGC	1 cut(s)	663
CciI	TCATGA	1 cut(s)	435
CfoI	GCGC	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	5 cut(s)	8, 208, 343, 436, 607
CviJI	RGCY	9 cut(s)	83, 122, 214, 264, 361, 385, 443, 661, 757
CviKI_1	RGCY	9 cut(s)	83, 122, 214, 264, 361, 385, 443, 661, 757
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	3 cut(s)	216, 426, 834
DpnI	GATC	4 cut(s)	20, 87, 375, 434
DpnII	GATC	4 cut(s)	18, 85, 373, 432
DraI	TTTAAA	1 cut(s)	684
Eco24I	GRGCYC	1 cut(s)	759
Eco47I	GGWCC	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	759
FaeI	CATG	5 cut(s)	11, 211, 346, 439, 610
FaqI	GGGAC	2 cut(s)	18, 520
FatI	CATG	5 cut(s)	7, 207, 342, 435, 606
FauNDI	CATATG	1 cut(s)	556
Fnu4HI	GCNGC	4 cut(s)	120, 246, 249, 511
FokI	GGATG	3 cut(s)	383, 607, 713
FriOI	GRGCYC	1 cut(s)	759
Fsp4HI	GCNGC	4 cut(s)	120, 246, 249, 511
FspBI	CTAG	2 cut(s)	80, 411
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	4 cut(s)	120, 246, 249, 511
GsaI	CCCAGC	1 cut(s)	541
HaeIII	GGCC	1 cut(s)	361
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	5 cut(s)	11, 211, 346, 439, 610
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HinfI	GANTC	6 cut(s)	76, 227, 520, 626, 741, 746
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	6 cut(s)	378, 615, 625, 631, 790, 814
Hpy188III	TCNNGA	6 cut(s)	73, 113, 436, 672, 726, 738
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	4 cut(s)	320, 433, 816, 865
HpyCH4III	ACNGT	2 cut(s)	638, 794
HpyCH4V	TGCA	7 cut(s)	41, 251, 335, 405, 416, 620, 807
HpyF3I	CTNAG	3 cut(s)	216, 426, 834
Hsp92II	CATG	5 cut(s)	11, 211, 346, 439, 610
HspAI	GCGC	1 cut(s)	243
Kzo9I	GATC	4 cut(s)	18, 85, 373, 432
LmnI	GCTCC	1 cut(s)	180
Lsp1109I	GCAGC	3 cut(s)	131, 232, 235
LweI	GCATC	4 cut(s)	22, 28, 167, 629
MaeI	CTAG	2 cut(s)	80, 411
MalI	GATC	4 cut(s)	20, 87, 375, 434
MboI	GATC	4 cut(s)	18, 85, 373, 432
MboII	GAAGA	5 cut(s)	41, 101, 269, 645, 741
MhlI	GDGCHC	2 cut(s)	185, 759
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	1 cut(s)	768
MnlI	CCTC	8 cut(s)	109, 141, 309, 345, 423, 705, 819, 858
MseI	TTAA	5 cut(s)	285, 447, 596, 683, 797
Mva1269I	GAATGC	1 cut(s)	512
NdeI	CATATG	1 cut(s)	556
NdeII	GATC	4 cut(s)	18, 85, 373, 432
NlaIII	CATG	5 cut(s)	11, 211, 346, 439, 610
NspV	TTCGAA	2 cut(s)	230, 718
PagI	TCATGA	1 cut(s)	435
PctI	GAATGC	1 cut(s)	512
PfeI	GAWTC	5 cut(s)	227, 520, 626, 741, 746
PflMI	CCANNNNNTGG	1 cut(s)	65
PkrI	GCNGC	4 cut(s)	121, 247, 250, 512
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	537
PspPI	GGNCC	1 cut(s)	128
PspPPI	RGGWCCY	1 cut(s)	128
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
SaqAI	TTAA	5 cut(s)	285, 447, 596, 683, 797
SatI	GCNGC	4 cut(s)	120, 246, 249, 511
Sau3AI	GATC	4 cut(s)	18, 85, 373, 432
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	1 cut(s)	70
SduI	GDGCHC	2 cut(s)	185, 759
SetI	ASST	8 cut(s)	85, 133, 356, 387, 478, 716, 830, 869
SfaNI	GCATC	4 cut(s)	22, 28, 167, 629
SfuI	TTCGAA	2 cut(s)	230, 718
SinI	GGWCC	1 cut(s)	128
SsiI	CCGC	1 cut(s)	511
SspI	AATATT	1 cut(s)	732
SspMI	CTAG	2 cut(s)	80, 411
TaaI	ACNGT	2 cut(s)	638, 794
TaqI	TCGA	5 cut(s)	230, 647, 718, 739, 744
TauI	GCSGC	1 cut(s)	513
TfiI	GAWTC	5 cut(s)	227, 520, 626, 741, 746
Tru1I	TTAA	5 cut(s)	285, 447, 596, 683, 797
Tru9I	TTAA	5 cut(s)	285, 447, 596, 683, 797
TseI	GCWGC	3 cut(s)	119, 245, 248
TspDTI	ATGAA	5 cut(s)	35, 224, 452, 480, 558
Van91I	CCANNNNNTGG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	4 cut(s)	233, 548, 598, 720
XspI	CTAG	2 cut(s)	80, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.