Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Reverse (-)

3119105 .. 3119926

Gene Structure 822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46394

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGATGAAAAAGGAGGCGGCGCCACTGGCGACCTTGGAGGCTTCGGCCGCGGAATCAGAGGCTTCGGCCGCGGAATCAGAGGCTTCAAGGTCTTTGTCGTTGTCGTCGACAGCAAAAGCCACGTCGGACTCGGCATCAAGTGCAGCAAGGAGGTTGCTATTGCTATTCGTGGAGCCATTATTGTGGCTAAGCTGTGGGTGATTCCTGTGAGGAGGGGTTACAAGATCGGAAAGCCCCACACCATGCATTACAAGGTCACCGGAAAGTATGGCTCTGTTATCGTGGGGATGGTGACTGCTCCTCGTGGTTTTGGTATTGTGGTGGCTAGGGTTCCCAAGAAGGTGTTCCAATTTGCTGGTATTGATGATGTGTTCACTTCATCCAAGGGGTCTACCAAGACTCTCGAAACTTTGTCAAGGTTTGCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

143

Amino Acids

15.17

Weight (kDa)

10.61

Isoelectric Point (pI)

7.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	26 - 71	1.7e-13	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	88 - 135	2.8e-13	Ribosomal protein S5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AccI	GTMKAC	2 cut(s)	108, 392
AccII	CGCG	2 cut(s)	51, 72
AciI	CCGC	5 cut(s)	18, 49, 51, 70, 72
AcoI	YGGCCR	2 cut(s)	46, 67
AcyI	GRCGYC	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	88
AjiI	CACGTC	1 cut(s)	124
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
AoxI	GGCC	2 cut(s)	46, 67
ApeKI	GCWGC	1 cut(s)	144
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
Asp700I	GAANNNNTTC	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	23
AsuHPI	GGTGA	3 cut(s)	211, 250, 304
BanI	GGYRCC	1 cut(s)	20
BauI	CACGAG	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	327
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	4 cut(s)	19, 49, 70, 145
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	4 cut(s)	20, 50, 71, 146
BmgBI	CACGTC	1 cut(s)	124
BmiI	GGNNCC	3 cut(s)	22, 175, 333
BmsI	GCATC	1 cut(s)	144
Bpu1102I	GCTNAGC	1 cut(s)	189
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	4 cut(s)	34, 49, 70, 384
BsaWI	WCCGGW	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	31
BseDI	CCNNGG	4 cut(s)	34, 49, 70, 384
BseGI	GGATG	3 cut(s)	10, 294, 380
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	2 cut(s)	226, 291
BseX3I	CGGCCG	2 cut(s)	46, 67
BseXI	GCAGC	1 cut(s)	156
BsgI	GTGCAG	1 cut(s)	163
Bsh1236I	CGCG	2 cut(s)	51, 72
Bsh1285I	CGRYCG	2 cut(s)	49, 70
BshFI	GGCC	2 cut(s)	48, 69
BshNI	GGYRCC	1 cut(s)	20
BsiEI	CGRYCG	2 cut(s)	49, 70
BsiSI	CCGG	1 cut(s)	261
BsnI	GGCC	2 cut(s)	48, 69
Bsp143I	GATC	1 cut(s)	225
Bsp1720I	GCTNAGC	1 cut(s)	189
BspACI	CCGC	5 cut(s)	18, 49, 51, 70, 72
BspANI	GGCC	2 cut(s)	48, 69
BspFNI	CGCG	2 cut(s)	51, 72
BspLI	GGNNCC	3 cut(s)	22, 175, 333
BspT107I	GGYRCC	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	4 cut(s)	34, 49, 70, 384
BssMI	GATC	1 cut(s)	225
BssNI	GRCGYC	1 cut(s)	21
BssSI	CACGAG	1 cut(s)	303
BssT1I	CCWWGG	2 cut(s)	34, 384
Bst2BI	CACGAG	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	189
BstDSI	CCRYGG	2 cut(s)	49, 70
BstEII	GGTNACC	1 cut(s)	256
BstF5I	GGATG	3 cut(s)	10, 294, 380
BstFNI	CGCG	2 cut(s)	51, 72
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	1 cut(s)	228
BstMBI	GATC	1 cut(s)	225
BstMCI	CGRYCG	2 cut(s)	49, 70
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 48, 69, 141
BstPI	GGTNACC	1 cut(s)	256
BstUI	CGCG	2 cut(s)	51, 72
BstV1I	GCAGC	1 cut(s)	156
BstXI	CCANNNNNNTGG	2 cut(s)	184, 356
BstZI	CGGCCG	2 cut(s)	46, 67
BsuRI	GGCC	2 cut(s)	48, 69
BtgI	CCRYGG	2 cut(s)	49, 70
BtrI	CACGTC	1 cut(s)	124
BtsCI	GGATG	3 cut(s)	10, 294, 380
BtsIMutI	CAGTG	1 cut(s)	24
CfoI	GCGC	1 cut(s)	23
Cfr42I	CCGCGG	2 cut(s)	52, 73
CviAII	CATG	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	189
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
EaeI	YGGCCR	2 cut(s)	46, 67
EagI	CGGCCG	2 cut(s)	46, 67
EclXI	CGGCCG	2 cut(s)	46, 67
Eco130I	CCWWGG	2 cut(s)	34, 384
Eco52I	CGGCCG	2 cut(s)	46, 67
Eco91I	GGTNACC	1 cut(s)	256
EcoO65I	GGTNACC	1 cut(s)	256
EcoT14I	CCWWGG	2 cut(s)	34, 384
EcoT22I	ATGCAT	1 cut(s)	249
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
ErhI	CCWWGG	2 cut(s)	34, 384
FaeI	CATG	1 cut(s)	247
FaiI	YATR	2 cut(s)	245, 270
FalI	AAGNNNNNCTT	1 cut(s)	409
FatI	CATG	1 cut(s)	243
FblI	GTMKAC	2 cut(s)	108, 392
Fnu4HI	GCNGC	4 cut(s)	19, 49, 70, 145
FokI	GGATG	3 cut(s)	17, 301, 367
Fsp4HI	GCNGC	4 cut(s)	19, 49, 70, 145
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	4 cut(s)	19, 49, 70, 145
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	48, 69
HapII	CCGG	1 cut(s)	261
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	5 cut(s)	54, 75, 129, 202, 400
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	3 cut(s)	211, 250, 304
Hpy166II	GTNNAC	3 cut(s)	109, 375, 393
Hpy188I	TCNGA	4 cut(s)	59, 80, 128, 230
Hpy188III	TCNNGA	1 cut(s)	404
Hpy8I	GTNNAC	3 cut(s)	109, 375, 393
Hpy99I	CGWCG	2 cut(s)	110, 128
HpyAV	CCTTC	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	144, 247
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 48, 69, 141
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	247
HspAI	GCGC	1 cut(s)	21
KasI	GGCGCC	1 cut(s)	20
KspI	CCGCGG	2 cut(s)	52, 73
Kzo9I	GATC	1 cut(s)	225
LmnI	GCTCC	2 cut(s)	173, 304
LpnPI	CCDG	4 cut(s)	12, 219, 274, 342
Lsp1109I	GCAGC	1 cut(s)	156
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	3 cut(s)	218, 256, 292
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MluCI	AATT	1 cut(s)	350
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	2 cut(s)	123, 394
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	8 cut(s)	8, 32, 53, 74, 145, 204, 207, 312
Mph1103I	ATGCAT	1 cut(s)	249
MroXI	GAANNNNTTC	1 cut(s)	344
MseI	TTAA	1 cut(s)	430
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	2 cut(s)	51, 72
MspI	CCGG	1 cut(s)	261
MvnI	CGCG	2 cut(s)	51, 72
MwoI	GCNNNNNNNGC	4 cut(s)	27, 48, 69, 141
NarI	GGCGCC	1 cut(s)	21
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	1 cut(s)	247
NlaIV	GGNNCC	3 cut(s)	22, 175, 333
NmeAIII	GCCGAG	1 cut(s)	111
NmuCI	GTSAC	2 cut(s)	256, 292
NsiI	ATGCAT	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	3 cut(s)	54, 75, 202
PkrI	GCNGC	4 cut(s)	20, 50, 71, 146
PleI	GAGTC	2 cut(s)	123, 394
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	2 cut(s)	123, 394
PspEI	GGTNACC	1 cut(s)	256
PspN4I	GGNNCC	3 cut(s)	22, 175, 333
RseI	CAYNNNNRTG	1 cut(s)	182
SacII	CCGCGG	2 cut(s)	52, 73
SalI	GTCGAC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	430
SatI	GCNGC	4 cut(s)	19, 49, 70, 145
Sau3AI	GATC	1 cut(s)	225
SchI	GAGTC	2 cut(s)	123, 394
SetI	ASST	8 cut(s)	36, 93, 126, 156, 195, 258, 345, 422
SfaNI	GCATC	1 cut(s)	144
SfoI	GGCGCC	1 cut(s)	22
Sfr303I	CCGCGG	2 cut(s)	52, 73
SgrBI	CCGCGG	2 cut(s)	52, 73
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	350
SsiI	CCGC	5 cut(s)	18, 49, 51, 70, 72
SspDI	GGCGCC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	327
StyI	CCWWGG	2 cut(s)	34, 384
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	108, 405
TasI	AATT	1 cut(s)	350
TauI	GCSGC	3 cut(s)	21, 51, 72
TfiI	GAWTC	3 cut(s)	54, 75, 202
Tru1I	TTAA	1 cut(s)	430
Tru9I	TTAA	1 cut(s)	430
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	2 cut(s)	256, 292
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	2 cut(s)	256, 292
TspDTI	ATGAA	2 cut(s)	21, 369
TspRI	CASTG	1 cut(s)	31
XmiI	GTMKAC	2 cut(s)	108, 392
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	1 cut(s)	327
Zsp2I	ATGCAT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.