Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Forward (+)

7506163 .. 7506867

Gene Structure 705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0044100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAGTTCGTGTGCTAATGATTTGTCACAGATCAGTTTTGGGGACTTGCTCTTTCTTTTGTTCAGTGTGTGGAAGGAGAGGAATGACCGAGTTTGGCACCAGAAGAAACAGGGAACGGGTGATGTGGTTATTGGTGTTATGACTCGTTTACATGAATTTCGTTTCCATAACATGAAAGAGAGTGGTAGTACAAGTCGATGTAATAGAGTGGCTCGCTGGAAGGCTCCACCGGTGGGGAGTTTGAAGATTAATGTTGACGGGGCCTTTAATCATGTCACCCGTAAAGGTGGTGTGGGTTTTGTTATCCGAAATGAGTTGGGAGTTATGCTGGCAGGAGGTGCTTGCCCTCTAAGTGGTTTGTTATTGGCGGAACACTGGGAGGTCTTAGCTTGCCAGAAAGCACTTGAATTTGCGGTGGCTCATTCCTTTTTACCTGCGATTCTGGAAACAGATGCATTGGAAGTCCAACACCAATTGAATGCAGCTGTGGAGACTAATACTTCCGTGCTGGGAAGGGTTTATGAAGATTTGGTGCTTCTGTTGGCATCTCAACCTTCTGTGTCTGTCGCTCATGTTGGCAGATTGGGCAACACTGTTGCTCATAGTCTAGCAGCTTATGCTTGTAGTTTGCAGCATGACTGCTTTTATTTCTCTGCTCCGTCTTTTCTCCTAGCTGCAGTAGCAGCTGAACTTTGCATTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

234

Amino Acids

25.43

Weight (kDa)

6.78

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	84 - 207	3.9e-19	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	442
AccB1I	GGYRCC	1 cut(s)	96
AciI	CCGC	2 cut(s)	368, 413
AcsI	RAATTY	2 cut(s)	155, 407
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	2 cut(s)	233, 353
AgeI	ACCGGT	1 cut(s)	229
AgsI	TTSAA	3 cut(s)	244, 407, 478
AluBI	AGCT	5 cut(s)	389, 485, 614, 674, 686
AluI	AGCT	5 cut(s)	389, 485, 614, 674, 686
Alw26I	GTCTC	1 cut(s)	485
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	5 cut(s)	482, 611, 631, 674, 683
ApoI	RAATTY	2 cut(s)	155, 407
AseI	ATTAAT	1 cut(s)	249
AsiGI	ACCGGT	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	261
AsuHPI	GGTGA	2 cut(s)	131, 268
BanI	GGYRCC	1 cut(s)	96
BbvI	GCAGC	5 cut(s)	494, 623, 643, 661, 695
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	2 cut(s)	608, 671
BfmI	CTRYAG	1 cut(s)	675
BfuAI	ACCTGC	1 cut(s)	442
BisI	GCNGC	5 cut(s)	483, 612, 632, 675, 684
BlsI	GCNGC	5 cut(s)	484, 613, 633, 676, 685
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	3 cut(s)	98, 225, 262
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	2 cut(s)	442, 554
BmuI	ACTGGG	1 cut(s)	385
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 353
Bse118I	RCCGGY	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	380
BseLI	CCNNNNNNNGG	2 cut(s)	233, 353
BseNI	ACTGG	1 cut(s)	380
BseXI	GCAGC	5 cut(s)	494, 623, 643, 661, 695
BseYI	CCCAGC	1 cut(s)	508
BshFI	GGCC	1 cut(s)	263
BshNI	GGYRCC	1 cut(s)	96
BshTI	ACCGGT	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	233, 353
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	2 cut(s)	368, 413
BspANI	GGCC	1 cut(s)	263
BspLI	GGNNCC	3 cut(s)	98, 225, 262
BspMAI	CTGCAG	1 cut(s)	679
BspMI	ACCTGC	1 cut(s)	442
BspT107I	GGYRCC	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	229
BssMI	GATC	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	595
BstAPI	GCANNNNNTGC	2 cut(s)	338, 617
BstC8I	GCNNGC	4 cut(s)	214, 330, 343, 391
BstDEI	CTNAG	2 cut(s)	350, 385
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	5 cut(s)	338, 585, 617, 680, 683
BstSFI	CTRYAG	1 cut(s)	675
BstV1I	GCAGC	5 cut(s)	494, 623, 643, 661, 695
BsuRI	GGCC	1 cut(s)	263
BtsIMutI	CAGTG	3 cut(s)	70, 373, 591
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	4 cut(s)	214, 330, 343, 391
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	189
CspAI	ACCGGT	1 cut(s)	229
CviAII	CATG	5 cut(s)	152, 172, 272, 572, 635
CviJI	RGCY	9 cut(s)	212, 224, 263, 389, 419, 485, 614, 674, 686
CviKI_1	RGCY	9 cut(s)	212, 224, 263, 389, 419, 485, 614, 674, 686
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	2 cut(s)	350, 385
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	383
EcoO109I	RGGNCCY	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	457
FaeI	CATG	5 cut(s)	155, 175, 275, 575, 638
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	5 cut(s)	151, 171, 271, 571, 634
Fnu4HI	GCNGC	5 cut(s)	483, 612, 632, 675, 684
Fsp4HI	GCNGC	5 cut(s)	483, 612, 632, 675, 684
FspBI	CTAG	2 cut(s)	608, 671
GluI	GCNGC	5 cut(s)	483, 612, 632, 675, 684
GsaI	CCCAGC	1 cut(s)	512
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	5 cut(s)	155, 175, 275, 575, 638
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	2 cut(s)	142, 439
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	2 cut(s)	131, 268
Hpy166II	GTNNAC	2 cut(s)	149, 256
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	2 cut(s)	149, 256
HpyAV	CCTTC	4 cut(s)	67, 214, 507, 564
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4V	TGCA	5 cut(s)	455, 482, 631, 677, 696
HpyF10VI	GCNNNNNNNGC	5 cut(s)	338, 585, 617, 680, 683
HpyF3I	CTNAG	2 cut(s)	350, 385
Hsp92II	CATG	5 cut(s)	155, 175, 275, 575, 638
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	229, 661
Lsp1109I	GCAGC	5 cut(s)	494, 623, 643, 661, 695
LweI	GCATC	2 cut(s)	442, 554
MaeI	CTAG	2 cut(s)	608, 671
MaeIII	GTNAC	2 cut(s)	24, 274
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	3 cut(s)	115, 256, 536
MfeI	CAATTG	1 cut(s)	473
MluCI	AATT	3 cut(s)	155, 407, 473
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	490
MnlI	CCTC	4 cut(s)	72, 329, 357, 373
Mph1103I	ATGCAT	1 cut(s)	457
MseI	TTAA	2 cut(s)	249, 267
MspA1I	CMGCKG	2 cut(s)	485, 686
MspI	CCGG	1 cut(s)	230
MunI	CAATTG	1 cut(s)	473
Mva1269I	GAATGC	1 cut(s)	484
MwoI	GCNNNNNNNGC	5 cut(s)	338, 585, 617, 680, 683
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	5 cut(s)	155, 175, 275, 575, 638
NlaIV	GGNNCC	3 cut(s)	98, 225, 262
NmuCI	GTSAC	2 cut(s)	24, 274
NsiI	ATGCAT	1 cut(s)	457
PctI	GAATGC	1 cut(s)	484
PfeI	GAWTC	1 cut(s)	439
PinAI	ACCGGT	1 cut(s)	229
PkrI	GCNGC	5 cut(s)	484, 613, 633, 676, 685
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PshBI	ATTAAT	1 cut(s)	249
PspFI	CCCAGC	1 cut(s)	508
PspN4I	GGNNCC	3 cut(s)	98, 225, 262
PspPI	GGNCC	1 cut(s)	261
PstI	CTGCAG	1 cut(s)	679
PvuII	CAGCTG	2 cut(s)	485, 686
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	249, 267
SatI	GCNGC	5 cut(s)	483, 612, 632, 675, 684
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	261
SchI	GAGTC	1 cut(s)	136
SfaNI	GCATC	2 cut(s)	442, 554
SfcI	CTRYAG	1 cut(s)	675
SgrAI	CRCCGGYG	1 cut(s)	229
Sse9I	AATT	3 cut(s)	155, 407, 473
SsiI	CCGC	2 cut(s)	368, 413
SspMI	CTAG	2 cut(s)	608, 671
TaaI	ACNGT	1 cut(s)	595
TaqI	TCGA	1 cut(s)	196
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	3 cut(s)	155, 407, 473
TatI	WGTACW	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	2 cut(s)	249, 267
Tru9I	TTAA	2 cut(s)	249, 267
TscAI	CASTG	3 cut(s)	70, 380, 598
TseFI	GTSAC	2 cut(s)	24, 274
TseI	GCWGC	5 cut(s)	482, 611, 631, 674, 683
Tsp45I	GTSAC	2 cut(s)	24, 274
TspDTI	ATGAA	3 cut(s)	168, 188, 537
TspGWI	ACGGA	2 cut(s)	493, 648
TspRI	CASTG	3 cut(s)	70, 380, 598
VspI	ATTAAT	1 cut(s)	249
XapI	RAATTY	2 cut(s)	155, 407
XspI	CTAG	2 cut(s)	608, 671
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.