RchiOBHm_Chr5g0009771

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
6466529 .. 6469645
3117 bp
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UTR
Exon/CDS
Intron
PRQ29063

Sequence Viewer

Length: 135 bp
ATGGCCATAGGACGGGAAATTAGCCAACGTGCCATCACCAATGGTTTGCTGACTTCAACAGCTGCCTATTGTGTGCTGCAAAAGGGTTCCACCTTTCTTTACTCTGAATCTTGTTCTAGGTGTATGGTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

44

Amino Acids

4.77

Weight (kDa)

8.63

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 1 cut(s) 57
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 62, 76
AsuHPI GGTGA 1 cut(s) 28
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 2 cut(s) 49, 63
BccI CCATC 1 cut(s) 41
BfaI CTAG 1 cut(s) 117
BisI GCNGC 2 cut(s) 63, 77
BlsI GCNGC 2 cut(s) 64, 78
BmiI GGNNCC 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 12
BseXI GCAGC 2 cut(s) 49, 63
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 12
BsnI GGCC 1 cut(s) 5
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 88
BstV1I GCAGC 2 cut(s) 49, 63
BsuRI GGCC 1 cut(s) 5
CviJI RGCY 3 cut(s) 5, 24, 62
CviKI_1 RGCY 3 cut(s) 5, 24, 62
EaeI YGGCCR 1 cut(s) 3
FaiI YATR 2 cut(s) 8, 125
Fnu4HI GCNGC 2 cut(s) 63, 77
Fsp4HI GCNGC 2 cut(s) 63, 77
FspBI CTAG 1 cut(s) 117
GluI GCNGC 2 cut(s) 63, 77
HaeIII GGCC 1 cut(s) 5
HinfI GANTC 1 cut(s) 107
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 79
HpySE526I ACGT 1 cut(s) 28
Lsp1109I GCAGC 2 cut(s) 49, 63
MaeI CTAG 1 cut(s) 117
MaeII ACGT 1 cut(s) 28
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 18
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 62
NlaIV GGNNCC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 2 cut(s) 64, 78
PspN4I GGNNCC 1 cut(s) 88
PvuII CAGCTG 1 cut(s) 62
SatI GCNGC 2 cut(s) 63, 77
SetI ASST 4 cut(s) 31, 64, 95, 122
SgeI CNNG 4 cut(s) 26, 41, 123, 129
Sse9I AATT 1 cut(s) 18
SspMI CTAG 1 cut(s) 117
TaiI ACGT 1 cut(s) 31
TasI AATT 1 cut(s) 18
TfiI GAWTC 1 cut(s) 107
TseI GCWGC 2 cut(s) 62, 76
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.