Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Forward (+)

4954352 .. 4955498

Gene Structure 1147 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG064600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGATGAAAGAGGAGGCGGCGCCACTGGCGAGCGTGGAGGCTTTGGCCACGGAATCGGAGGCTTCAAGGTCTTTGTCGTCGTCGGCGACAGCAAAAGCCACGTCGGACTCGGCGTCAAGTGCAGCAAAGAGGTTGCTACTGCTATTCGTGGAGCCATTATTGTGGCTAAGCTATGGGTGATTCTTGTGAGGAGGGGTTACAAGATCGGAAAGCCCCACACCATGCATTGCAAGGTCACCAGAAAGTGTGGCTCTGTTATCGTGGGGATGGTGCCTGCTCCTCGTGGGGATCTACCAAGACTCTCAAAACTTTGTCAAGGAATAATGATTGAGCTATTTAAAGTGAAGGAAAAGCAGAGGGAGATTGCTGAAAATGCCAATGGAAAGTCACTGGTTAAGAAGCAAAGTTCTGGAGAATTACAAAGGCTTTACCCCACTTCCATAACAATTGGCTGTGCAGTCCTCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

156

Amino Acids

16.65

Weight (kDa)

10.03

Isoelectric Point (pI)

21.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	21 - 63	5.3e-14	Ribosomal protein S5, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	20, 271
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	1 cut(s)	297
AcoI	YGGCCR	1 cut(s)	46
AcyI	GRCGYC	2 cut(s)	21, 114
AgsI	TTSAA	1 cut(s)	67
AhdI	GACNNNNNGTC	1 cut(s)	113
AjiI	CACGTC	1 cut(s)	103
AluBI	AGCT	2 cut(s)	172, 334
AluI	AGCT	2 cut(s)	172, 334
AlwI	GGATC	1 cut(s)	297
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	123
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
AspLEI	GCGC	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	190, 229
BalI	TGGCCA	1 cut(s)	48
BanI	GGYRCC	2 cut(s)	20, 271
BauI	CACGAG	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	1 cut(s)	262
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	2 cut(s)	19, 124
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	2 cut(s)	20, 125
BmeRI	GACNNNNNGTC	1 cut(s)	113
BmgBI	CACGTC	1 cut(s)	103
BmiI	GGNNCC	3 cut(s)	22, 154, 273
BpmI	CTGGAG	1 cut(s)	432
Bpu1102I	GCTNAGC	1 cut(s)	168
BsaHI	GRCGYC	2 cut(s)	21, 114
BsaJI	CCNNGG	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	31, 396
Bse3DI	GCAATG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	2 cut(s)	10, 273
BseMI	GCAATG	1 cut(s)	226
BseNI	ACTGG	2 cut(s)	31, 396
BseRI	GAGGAG	3 cut(s)	27, 205, 270
BseXI	GCAGC	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	142
BshFI	GGCC	1 cut(s)	48
BshNI	GGYRCC	2 cut(s)	20, 271
BsnI	GGCC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	204, 289
Bsp1720I	GCTNAGC	1 cut(s)	168
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	48
BspLI	GGNNCC	3 cut(s)	22, 154, 273
BspPI	GGATC	1 cut(s)	297
BspT107I	GGYRCC	2 cut(s)	20, 271
BsrDI	GCAATG	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	31, 396
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	2 cut(s)	204, 289
BssNI	GRCGYC	2 cut(s)	21, 114
BssSI	CACGAG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	282
BstACI	GRCGYC	2 cut(s)	21, 114
BstC8I	GCNNGC	2 cut(s)	32, 276
BstDEI	CTNAG	1 cut(s)	168
BstDSI	CCRYGG	1 cut(s)	49
BstEII	GGTNACC	1 cut(s)	235
BstF5I	GGATG	2 cut(s)	10, 273
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	2 cut(s)	207, 292
BstMBI	GATC	2 cut(s)	204, 289
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 120, 374
BstPI	GGTNACC	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	289
BstXI	CCANNNNNNTGG	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	49
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	10, 273
BtsIMutI	CAGTG	2 cut(s)	24, 389
Cac8I	GCNNGC	2 cut(s)	32, 276
CfoI	GCGC	1 cut(s)	23
CseI	GACGC	1 cut(s)	103
CviAII	CATG	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	168
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	2 cut(s)	206, 291
DpnII	GATC	2 cut(s)	204, 289
DraI	TTTAAA	1 cut(s)	340
DriI	GACNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	46
Eam1105I	GACNNNNNGTC	1 cut(s)	113
Eco91I	GGTNACC	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
FaeI	CATG	1 cut(s)	226
FaiI	YATR	3 cut(s)	175, 224, 443
FatI	CATG	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	19, 124
FokI	GGATG	2 cut(s)	17, 280
Fsp4HI	GCNGC	2 cut(s)	19, 124
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	2 cut(s)	19, 124
GsuI	CTGGAG	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	48
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	2 cut(s)	21, 114
Hin1II	CATG	1 cut(s)	226
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HinfI	GANTC	4 cut(s)	54, 108, 181, 300
HphI	GGTGA	2 cut(s)	190, 229
Hpy188I	TCNGA	3 cut(s)	59, 107, 209
Hpy188III	TCNNGA	1 cut(s)	411
Hpy99I	CGWCG	3 cut(s)	83, 86, 107
HpyAV	CCTTC	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	4 cut(s)	123, 226, 231, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 120, 374
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	2 cut(s)	21, 114
Hsp92II	CATG	1 cut(s)	226
HspAI	GCGC	1 cut(s)	21
KasI	GGCGCC	1 cut(s)	20
Kzo9I	GATC	2 cut(s)	204, 289
LmnI	GCTCC	2 cut(s)	152, 283
LpnPI	CCDG	5 cut(s)	12, 253, 288, 377, 396
Lsp1109I	GCAGC	1 cut(s)	135
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	3 cut(s)	197, 235, 387
MalI	GATC	2 cut(s)	206, 291
MboI	GATC	2 cut(s)	204, 289
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	1 cut(s)	289
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	2 cut(s)	416, 447
MluNI	TGGCCA	1 cut(s)	48
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	2 cut(s)	102, 294
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	9 cut(s)	5, 8, 32, 53, 124, 183, 186, 291, 351
Mox20I	TGGCCA	1 cut(s)	48
Mph1103I	ATGCAT	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	2 cut(s)	339, 396
MslI	CAYNNNNRTG	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	48
MunI	CAATTG	1 cut(s)	447
MwoI	GCNNNNNNNGC	3 cut(s)	27, 120, 374
NarI	GGCGCC	1 cut(s)	21
NdeII	GATC	2 cut(s)	204, 289
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	3 cut(s)	22, 154, 273
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	2 cut(s)	235, 387
NsiI	ATGCAT	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 111
PfeI	GAWTC	2 cut(s)	54, 181
PkrI	GCNGC	2 cut(s)	20, 125
PleI	GAGTC	2 cut(s)	102, 294
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	2 cut(s)	102, 294
PspEI	GGTNACC	1 cut(s)	235
PspN4I	GGNNCC	3 cut(s)	22, 154, 273
PsuI	RGATCY	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	339, 396
SatI	GCNGC	2 cut(s)	19, 124
Sau3AI	GATC	2 cut(s)	204, 289
SchI	GAGTC	2 cut(s)	102, 294
SetI	ASST	6 cut(s)	72, 105, 135, 174, 237, 336
SfoI	GGCGCC	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	416, 447
SsiI	CCGC	1 cut(s)	18
SspDI	GGCGCC	1 cut(s)	20
TaiI	ACGT	1 cut(s)	105
TasI	AATT	2 cut(s)	416, 447
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	2 cut(s)	54, 181
Tru1I	TTAA	2 cut(s)	339, 396
Tru9I	TTAA	2 cut(s)	339, 396
TscAI	CASTG	2 cut(s)	31, 396
TseFI	GTSAC	2 cut(s)	235, 387
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	2 cut(s)	235, 387
TspDTI	ATGAA	1 cut(s)	21
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	2 cut(s)	31, 396
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.