Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Forward (+)

25152176 .. 25152490

Gene Structure 315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG241700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGATGAAAGAGGAGGCAGTGCCACTGGCGAGCGTGGAGGCTTCGGCCGCAGAATCGGAGGCTTCAAGGTCTTTGTCATCGTCGGTGACAACAAAAGCCACGTCGGACACGGCGTCAAGTGCAGCAAGGAGGTTGTTACTGCTATTTGTGGACCCATTATTGTGGCTAAGCTATGGGTGATTCCTGTGATGAGGGGATACAAGATCGGAAAGCCCCACACCATGCATTGCAAGGTCACCGGAAAGTGTGGCTATGTTATCGTGAGGATGGTGCTTGCTCCTTGTGGTTCTGGTGTTCCAATTTGCTGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

104

Amino Acids

11.12

Weight (kDa)

9.7

Isoelectric Point (pI)

13.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	18 - 63	4.6e-12	Ribosomal protein S5, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	49
AcoI	YGGCCR	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	114
AgsI	TTSAA	1 cut(s)	67
AhdI	GACNNNNNGTC	1 cut(s)	113
AjiI	CACGTC	1 cut(s)	103
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	123
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	3 cut(s)	98, 190, 229
AvaII	GGWCC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	1 cut(s)	262
BceAI	ACGGC	1 cut(s)	127
BciVI	GTATCC	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	191
BisI	GCNGC	2 cut(s)	49, 124
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	2 cut(s)	50, 125
Bme18I	GGWCC	1 cut(s)	152
BmeRI	GACNNNNNGTC	1 cut(s)	113
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	154
Bpu1102I	GCTNAGC	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	226
BseGI	GGATG	2 cut(s)	10, 273
BseMI	GCAATG	1 cut(s)	226
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	27
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	142
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	1 cut(s)	48
BsiEI	CGRYCG	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	240
BsnI	GGCC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	204
Bsp1720I	GCTNAGC	1 cut(s)	168
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	204
BssNI	GRCGYC	1 cut(s)	114
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	32, 276
BstDEI	CTNAG	1 cut(s)	168
BstEII	GGTNACC	1 cut(s)	235
BstF5I	GGATG	2 cut(s)	10, 273
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 120
BstPI	GGTNACC	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	135
BstXI	CCANNNNNNTGG	2 cut(s)	163, 306
BstZI	CGGCCG	1 cut(s)	46
BsuI	GTATCC	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	48
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	10, 273
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	24, 25
Cac8I	GCNNGC	2 cut(s)	32, 276
Cfr13I	GGNCC	1 cut(s)	152
CseI	GACGC	1 cut(s)	103
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	8 cut(s)	42, 48, 63, 99, 167, 172, 214, 252
CviKI_1	RGCY	8 cut(s)	42, 48, 63, 99, 167, 172, 214, 252
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
DriI	GACNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	46
EagI	CGGCCG	1 cut(s)	46
Eam1105I	GACNNNNNGTC	1 cut(s)	113
EclXI	CGGCCG	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	152
Eco52I	CGGCCG	1 cut(s)	46
Eco91I	GGTNACC	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	228
FaeI	CATG	1 cut(s)	226
FaiI	YATR	3 cut(s)	175, 224, 255
FatI	CATG	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	49, 124
FokI	GGATG	2 cut(s)	17, 280
Fsp4HI	GCNGC	2 cut(s)	49, 124
GluI	GCNGC	2 cut(s)	49, 124
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	226
HinfI	GANTC	2 cut(s)	54, 181
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	3 cut(s)	98, 190, 229
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	3 cut(s)	59, 107, 209
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	1 cut(s)	152
Hpy99I	CGWCG	2 cut(s)	86, 107
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	3 cut(s)	123, 226, 231
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 120
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	5 cut(s)	12, 198, 253, 276, 292
Lsp1109I	GCAGC	1 cut(s)	135
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	3 cut(s)	86, 136, 235
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MluCI	AATT	1 cut(s)	300
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	7 cut(s)	5, 8, 32, 53, 124, 186, 258
Mph1103I	ATGCAT	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	161
MspI	CCGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	48, 120
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	1 cut(s)	154
NmuCI	GTSAC	2 cut(s)	86, 235
NsiI	ATGCAT	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	54, 181
PkrI	GCNGC	2 cut(s)	50, 125
PspEI	GGTNACC	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	152
RseI	CAYNNNNRTG	1 cut(s)	161
SatI	GCNGC	2 cut(s)	49, 124
Sau3AI	GATC	1 cut(s)	204
Sau96I	GGNCC	1 cut(s)	152
SetI	ASST	5 cut(s)	72, 105, 135, 174, 237
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	300
SsiI	CCGC	1 cut(s)	49
TaiI	ACGT	1 cut(s)	105
TasI	AATT	1 cut(s)	300
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	54, 181
TscAI	CASTG	2 cut(s)	25, 31
TseFI	GTSAC	2 cut(s)	86, 235
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	2 cut(s)	86, 235
TspDTI	ATGAA	1 cut(s)	21
TspRI	CASTG	2 cut(s)	25, 31
VpaK11BI	GGWCC	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.