Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Forward (+)

63750853 .. 63752526

Gene Structure 1674 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0462600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGACAAGGTAATGAGGGCACTTCAAGATGATGAGATCACTGCCATTGGGGTCTTTGGTATGGGAGGCGTTGGCAAGACAAGTATGGTGAAACATGTCGGTGCACAAGCCCGGAAAATTGGGCTCTTTAATCATGTGATTATGGCTGTCGTATCCCAAACACCTAATTTGAGAAATATTCAAGGCACACTGGCCGATCTGCTGGGACTACAATTGTTGGAGGAGACAGAATTCGGTAGAGTGGTTAGATTGATGGAGAAAATAATGAAAGGAAATCGGATCCTTATAATCTTGGACGACATTTGGGAGAGAATAGATTTGTCTACTATTGGAATACCGAGCCATGATGAGCTTCAAAAGTGCAGTTCCAAAATCTTATTCACTACAAGGAGATTGAATGTTTGCCATTCGATGGAGAGCCAAGCAAGCATTCCTCTCCGAGTTTTGTCAGAAGATGATGCTTGGGATCTGTTTGTGAAGAAAGCAAGAAAGTCTTTTGATGAGTCGCCCAACTTTTATGATGTAGCGAGAGTAGAAAAGAATACTTTGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

184

Amino Acids

20.71

Weight (kDa)

6.91

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	1 - 164	3.7e-32	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AccB7I	CCANNNNNTGG	1 cut(s)	412
AccI	GTMKAC	1 cut(s)	323
AclWI	GGATC	3 cut(s)	274, 287, 474
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	412
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	4 cut(s)	26, 182, 356, 397
AjuI	GAANNNNNNNTTGG	4 cut(s)	362, 394, 414, 446
AluBI	AGCT	1 cut(s)	352
AluI	AGCT	1 cut(s)	352
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	1 cut(s)	218
Alw44I	GTGCAC	1 cut(s)	102
AlwI	GGATC	3 cut(s)	274, 287, 474
AoxI	GGCC	1 cut(s)	192
ApaLI	GTGCAC	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	230
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	100
BaeGI	GKGCMC	2 cut(s)	22, 106
BamHI	GGATCC	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	106
BccI	CCATC	2 cut(s)	247, 406
BciVI	GTATCC	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	218
BfuI	GTATCC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	448
BpuMI	CCSGG	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse1I	ACTGG	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	236
BseSI	GKGCMC	2 cut(s)	22, 106
BseYI	CCCAGC	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	382
BshFI	GGCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	1 cut(s)	218
BsmFI	GGGAC	1 cut(s)	219
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	3 cut(s)	22, 106, 126
Bsp143I	GATC	4 cut(s)	36, 196, 279, 466
BspANI	GGCC	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	281
BspPI	GGATC	3 cut(s)	274, 287, 474
BsrI	ACTGG	1 cut(s)	195
BssMI	GATC	4 cut(s)	36, 196, 279, 466
BstC8I	GCNNGC	1 cut(s)	427
BstKTI	GATC	4 cut(s)	39, 199, 282, 469
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	4 cut(s)	36, 196, 279, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	426
BstNSI	RCATGY	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	110
BstSLI	GKGCMC	2 cut(s)	22, 106
BstX2I	RGATCY	2 cut(s)	279, 466
BstYI	RGATCY	2 cut(s)	279, 466
BsuI	GTATCC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	194
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	39, 188
Cac8I	GCNNGC	1 cut(s)	427
CviAII	CATG	3 cut(s)	95, 134, 344
CviJI	RGCY	7 cut(s)	110, 124, 146, 194, 342, 352, 420
CviKI_1	RGCY	7 cut(s)	110, 124, 146, 194, 342, 352, 420
DpnI	GATC	4 cut(s)	38, 198, 281, 468
DpnII	GATC	4 cut(s)	36, 196, 279, 466
EaeI	YGGCCR	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	126
FaeI	CATG	3 cut(s)	98, 137, 347
FaiI	YATR	8 cut(s)	62, 86, 96, 135, 143, 287, 345, 519
FalI	AAGNNNNNCTT	2 cut(s)	478, 510
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	3 cut(s)	94, 133, 343
FblI	GTMKAC	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	126
GsaI	CCCAGC	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	1 cut(s)	112
Hin1II	CATG	3 cut(s)	98, 137, 347
HinfI	GANTC	1 cut(s)	503
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	104, 324
Hpy188I	TCNGA	3 cut(s)	279, 440, 451
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	2 cut(s)	104, 324
HpyCH4V	TGCA	2 cut(s)	104, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	426
Hsp92II	CATG	3 cut(s)	98, 137, 347
Kzo9I	GATC	4 cut(s)	36, 196, 279, 466
LpnPI	CCDG	3 cut(s)	125, 176, 188
LweI	GCATC	1 cut(s)	448
MalI	GATC	4 cut(s)	38, 198, 281, 468
MboI	GATC	4 cut(s)	36, 196, 279, 466
MboII	GAAGA	2 cut(s)	464, 490
MfeI	CAATTG	1 cut(s)	212
MflI	RGATCY	2 cut(s)	279, 466
MhlI	GDGCHC	3 cut(s)	22, 106, 126
MluCI	AATT	4 cut(s)	117, 166, 212, 230
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	4 cut(s)	9, 59, 214, 444
MseI	TTAA	1 cut(s)	129
MslI	CAYNNNNRTG	1 cut(s)	99
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	112
MunI	CAATTG	1 cut(s)	212
Mva1269I	GAATGC	1 cut(s)	429
MwoI	GCNNNNNNNGC	1 cut(s)	426
NciI	CCSGG	1 cut(s)	112
NdeII	GATC	4 cut(s)	36, 196, 279, 466
NlaIII	CATG	3 cut(s)	98, 137, 347
NlaIV	GGNNCC	1 cut(s)	281
NspI	RCATGY	1 cut(s)	98
PciI	ACATGT	1 cut(s)	94
PctI	GAATGC	1 cut(s)	429
PflMI	CCANNNNNTGG	1 cut(s)	412
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
PscI	ACATGT	1 cut(s)	94
PsiI	TTATAA	1 cut(s)	287
PspFI	CCCAGC	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	281
PsuI	RGATCY	2 cut(s)	279, 466
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	129
Sau3AI	GATC	4 cut(s)	36, 196, 279, 466
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	3 cut(s)	22, 106, 126
SetI	ASST	3 cut(s)	12, 166, 354
SfaNI	GCATC	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	4 cut(s)	117, 166, 212, 230
SspI	AATATT	1 cut(s)	178
StyD4I	CCNGG	1 cut(s)	110
TaqI	TCGA	1 cut(s)	410
TasI	AATT	4 cut(s)	117, 166, 212, 230
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	2 cut(s)	46, 195
TspDTI	ATGAA	1 cut(s)	281
TspRI	CASTG	2 cut(s)	46, 195
Van91I	CCANNNNNTGG	1 cut(s)	412
VneI	GTGCAC	1 cut(s)	102
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.