Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Reverse (-)

12956608 .. 12957627

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGTCGCGGCCGAGGATCATGAAGATCATGCCGGTTCGTGCGGACCCCGCCGATTAGAGGAATCGCTTCTTCGTTTGGTTGAAGAAACCCTAGATTATCGATTAATTGCTAGGCGTCTAGTTTTGTATGACCGAGATGAGGAGATTATCAATAGTTTGGCTTTGCCACACTTCCAATATAATTGGTTGCGCAGTCCTCGTTTAAAGTTGCTGACTTTGAGTTTGTGTCATTCTTTGTATTCAACAATGGCCGGTGAAGTAGTGACCGCAAATGGAAACACCCGATTGAATCCACAGAGGACTTATCAAGTTGTTGTGGCTATAACTCGAGAAATGGGTATTGAAAGGATGGGAAACTGCCTTGCGGTGCTTCTCCGATCTCAAGTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004146 GO:0004799 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0009058 GO:0009108 GO:0009256 GO:0009257 GO:0009396 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0019752 GO:0032259 GO:0034641 GO:0042083 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046653 GO:0046654 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00670 ko00790 ko01100 map00240 map00670 map00790 map01100

Pfam Domains

Protein Families

DHFR_1 Thymidylat_synt

Protein Analysis

130

Amino Acids

14.88

Weight (kDa)

6.41

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	191
AccII	CGCG	1 cut(s)	8
AciI	CCGC	5 cut(s)	8, 42, 49, 267, 365
AclWI	GGATC	1 cut(s)	24
AcoI	YGGCCR	2 cut(s)	9, 249
AcyI	GRCGYC	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	58, 139
AgsI	TTSAA	4 cut(s)	83, 243, 289, 344
AlwI	GGATC	1 cut(s)	24
Ama87I	CYCGRG	1 cut(s)	327
AoxI	GGCC	2 cut(s)	9, 249
ArsI	GACNNNNNNTTYG	2 cut(s)	205, 237
AseI	ATTAAT	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	266
AvaI	CYCGRG	1 cut(s)	327
AvaII	GGWCC	1 cut(s)	44
BccI	CCATC	1 cut(s)	343
BfaI	CTAG	3 cut(s)	92, 111, 119
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme18I	GGWCC	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	327
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	366
Bsa29I	ATCGAT	1 cut(s)	100
BsaHI	GRCGYC	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 139
Bse118I	RCCGGY	2 cut(s)	32, 251
BseCI	ATCGAT	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	354
BseLI	CCNNNNNNNGG	2 cut(s)	58, 139
BseRI	GAGGAG	1 cut(s)	155
BseX3I	CGGCCG	1 cut(s)	9
Bsh1236I	CGCG	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	11, 251
BshVI	ATCGAT	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	12
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	33, 252
BslI	CCNNNNNNNGG	2 cut(s)	58, 139
BsnI	GGCC	2 cut(s)	11, 251
BsoBI	CYCGRG	1 cut(s)	327
Bsp143I	GATC	3 cut(s)	16, 25, 377
BspACI	CCGC	5 cut(s)	8, 42, 49, 267, 365
BspANI	GGCC	2 cut(s)	11, 251
BspDI	ATCGAT	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	46
BspPI	GGATC	1 cut(s)	24
BsrFI	RCCGGY	2 cut(s)	32, 251
BssAI	RCCGGY	2 cut(s)	32, 251
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	3 cut(s)	16, 25, 377
BssNI	GRCGYC	1 cut(s)	115
BstACI	GRCGYC	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	354
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	3 cut(s)	19, 28, 380
BstMBI	GATC	3 cut(s)	16, 25, 377
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstUI	CGCG	1 cut(s)	8
BstZI	CGGCCG	1 cut(s)	9
Bsu15I	ATCGAT	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	11, 251
BsuTUI	ATCGAT	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	354
CciI	TCATGA	1 cut(s)	19
CfoI	GCGC	1 cut(s)	192
Cfr10I	RCCGGY	2 cut(s)	32, 251
Cfr13I	GGNCC	1 cut(s)	44
ClaI	ATCGAT	1 cut(s)	100
CseI	GACGC	1 cut(s)	104
CviAII	CATG	2 cut(s)	20, 29
CviJI	RGCY	4 cut(s)	11, 161, 251, 320
CviKI_1	RGCY	4 cut(s)	11, 161, 251, 320
DpnI	GATC	3 cut(s)	18, 27, 379
DpnII	GATC	3 cut(s)	16, 25, 377
DraI	TTTAAA	1 cut(s)	204
EaeI	YGGCCR	2 cut(s)	9, 249
EagI	CGGCCG	1 cut(s)	9
EclXI	CGGCCG	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	44
Eco52I	CGGCCG	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	327
FaeI	CATG	2 cut(s)	23, 32
FaiI	YATR	5 cut(s)	21, 30, 129, 180, 323
FatI	CATG	2 cut(s)	19, 28
FauI	CCCGC	1 cut(s)	56
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	1 cut(s)	361
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	3 cut(s)	92, 111, 119
FspI	TGCGCA	1 cut(s)	191
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	11, 251
HapII	CCGG	2 cut(s)	33, 252
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	2 cut(s)	23, 32
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	62, 289
HpaII	CCGG	2 cut(s)	33, 252
HphI	GGTGA	1 cut(s)	266
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	2 cut(s)	20, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	2 cut(s)	23, 32
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	16, 25, 377
LpnPI	CCDG	2 cut(s)	46, 265
MaeI	CTAG	3 cut(s)	92, 111, 119
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	3 cut(s)	18, 27, 379
MboI	GATC	3 cut(s)	16, 25, 377
MboII	GAAGA	3 cut(s)	35, 62, 95
MluCI	AATT	2 cut(s)	105, 181
MnlI	CCTC	5 cut(s)	7, 52, 133, 207, 291
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	3 cut(s)	104, 203, 391
MspI	CCGG	2 cut(s)	33, 252
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	48
NdeII	GATC	3 cut(s)	16, 25, 377
NlaIII	CATG	2 cut(s)	23, 32
NlaIV	GGNNCC	1 cut(s)	46
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	262
NsbI	TGCGCA	1 cut(s)	191
PaeR7I	CTCGAG	1 cut(s)	327
PagI	TCATGA	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	62, 289
PkrI	GCNGC	1 cut(s)	10
PshBI	ATTAAT	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	44
SaqAI	TTAA	3 cut(s)	104, 203, 391
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	3 cut(s)	16, 25, 377
Sau96I	GGNCC	1 cut(s)	44
Sfr274I	CTCGAG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	327, 381
SmoI	CTYRAG	2 cut(s)	327, 381
Sse9I	AATT	2 cut(s)	105, 181
SsiI	CCGC	5 cut(s)	8, 42, 49, 267, 365
SspMI	CTAG	3 cut(s)	92, 111, 119
TaqI	TCGA	2 cut(s)	100, 328
TaqII	GACCGA	1 cut(s)	147
TasI	AATT	2 cut(s)	105, 181
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	62, 289
Tru1I	TTAA	3 cut(s)	104, 203, 391
Tru9I	TTAA	3 cut(s)	104, 203, 391
TseFI	GTSAC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	44
VspI	ATTAAT	1 cut(s)	104
XhoI	CTCGAG	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	3 cut(s)	92, 111, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.