Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Reverse (-)

86472970 .. 86474319

Gene Structure 1350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00148850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAAAGAGGAGGCGGCGCCACCGGCGAGTGTGGAGGCTTCAACCGCGGAATCGGAGGCTTCAAGGTCTTTGTCGTCGTCGGCGACAAAGAAAGGCCACGTCGGACTCGGCGTCAAGTGCAGCAAGGAGGTTGCTATCGCTATTCGTAGAGCCATTATTGTGGCTAAGCCGTGGGTGATTCCCGTGAGGAGGGGGTTACAAGATTGGAAAGCCCCACACCATGCATTGCACGGAATAATGATTGAGCTATTTAAAGTGAAGGAAAAGCAGAGGGAGCTTGCTGAAAATGCCAATGGAAAGTCACCGGTTAAGAAGCAAATTGCTACTTTGAGCTTGTGTCATTCTTTGTATTCAACAATGGCTGGTGGAGTAGTGACCGCAAATGAAAATGGCAATGACAACATCCAGCTGAATCCACAGAGGACTTACCAAGTTGTTGTGGTTGCAACTCGAGAAATGGGTATTGGAAAGGATGGGAAACAGCCTTGGAGACTTCCTTCGATGTCAAGTTCTTTAAGGATGTCACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004146 GO:0004799 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0009058 GO:0009108 GO:0009256 GO:0009257 GO:0009396 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0019752 GO:0032259 GO:0034641 GO:0042083 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046653 GO:0046654 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00670 ko00790 ko01100 map00240 map00670 map00790 map01100

Pfam Domains

Protein Families

DHFR_1 Thymidylat_synt

Protein Analysis

176

Amino Acids

19.06

Weight (kDa)

9.86

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	30 - 63	1.7e-08	Ribosomal protein S5, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	16
AccII	CGCG	1 cut(s)	47
AciI	CCGC	4 cut(s)	14, 45, 47, 378
AcyI	GRCGYC	2 cut(s)	17, 111
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgeI	ACCGGT	1 cut(s)	304
AgsI	TTSAA	3 cut(s)	42, 63, 354
AhdI	GACNNNNNGTC	1 cut(s)	110
AjiI	CACGTC	1 cut(s)	100
AjuI	GAANNNNNNNTTGG	2 cut(s)	447, 479
AluBI	AGCT	4 cut(s)	247, 277, 333, 409
AluI	AGCT	4 cut(s)	247, 277, 333, 409
Alw26I	GTCTC	1 cut(s)	484
Ama87I	CYCGRG	1 cut(s)	450
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	120
AsiGI	ACCGGT	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	19
AsuHPI	GGTGA	3 cut(s)	187, 294, 516
AvaI	CYCGRG	1 cut(s)	450
BanI	GGYRCC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	132
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	484
BfoI	RGCGCY	1 cut(s)	20
BisI	GCNGC	2 cut(s)	15, 121
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	2 cut(s)	16, 122
BmeRI	GACNNNNNGTC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	450
BmgBI	CACGTC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	18
Bpu1102I	GCTNAGC	1 cut(s)	165
BsaHI	GRCGYC	2 cut(s)	17, 111
BsaJI	CCNNGG	3 cut(s)	45, 170, 485
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse118I	RCCGGY	2 cut(s)	22, 304
Bse3DI	GCAATG	2 cut(s)	224, 400
BseDI	CCNNGG	3 cut(s)	45, 170, 485
BseGI	GGATG	3 cut(s)	402, 478, 525
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMI	GCAATG	2 cut(s)	224, 400
BseRI	GAGGAG	2 cut(s)	23, 202
BseXI	GCAGC	1 cut(s)	132
BsgI	GTGCAG	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	96
BshNI	GGYRCC	1 cut(s)	16
BshTI	ACCGGT	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	2 cut(s)	23, 305
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	484
BsnI	GGCC	1 cut(s)	96
BsoBI	CYCGRG	1 cut(s)	450
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	4 cut(s)	14, 45, 47, 378
BspANI	GGCC	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	16
BsrDI	GCAATG	2 cut(s)	224, 400
BsrFI	RCCGGY	2 cut(s)	22, 304
BssAI	RCCGGY	2 cut(s)	22, 304
BssECI	CCNNGG	3 cut(s)	45, 170, 485
BssNI	GRCGYC	2 cut(s)	17, 111
BssT1I	CCWWGG	1 cut(s)	485
Bst4CI	ACNGT	1 cut(s)	528
BstACI	GRCGYC	2 cut(s)	17, 111
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	1 cut(s)	165
BstDSI	CCRYGG	2 cut(s)	45, 170
BstF5I	GGATG	3 cut(s)	402, 478, 525
BstFNI	CGCG	1 cut(s)	47
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstMAI	GTCTC	1 cut(s)	484
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 44, 117, 274, 287
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	132
BstXI	CCANNNNNNTGG	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	96
BtgI	CCRYGG	2 cut(s)	45, 170
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	3 cut(s)	402, 478, 525
Cac8I	GCNNGC	1 cut(s)	279
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	2 cut(s)	22, 304
Cfr42I	CCGCGG	1 cut(s)	48
CseI	GACGC	1 cut(s)	100
CspAI	ACCGGT	1 cut(s)	304
CviAII	CATG	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	165
DinI	GGCGCC	1 cut(s)	18
DraI	TTTAAA	1 cut(s)	253
DriI	GACNNNNNGTC	1 cut(s)	110
Eam1105I	GACNNNNNGTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	485
Eco88I	CYCGRG	1 cut(s)	450
EcoT14I	CCWWGG	1 cut(s)	485
EcoT22I	ATGCAT	1 cut(s)	226
EgeI	GGCGCC	1 cut(s)	18
EheI	GGCGCC	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	485
FaeI	CATG	1 cut(s)	224
FaiI	YATR	1 cut(s)	222
FatI	CATG	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	15, 121
FokI	GGATG	2 cut(s)	389, 485
Fsp4HI	GCNGC	2 cut(s)	15, 121
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	2 cut(s)	15, 121
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	2 cut(s)	23, 305
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	19
Hin1I	GRCGYC	2 cut(s)	17, 111
Hin1II	CATG	1 cut(s)	224
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	4 cut(s)	50, 105, 178, 412
HpaII	CCGG	2 cut(s)	23, 305
HphI	GGTGA	3 cut(s)	187, 294, 516
Hpy188I	TCNGA	2 cut(s)	55, 104
Hpy188III	TCNNGA	1 cut(s)	452
Hpy99I	CGWCG	3 cut(s)	79, 82, 104
HpyAV	CCTTC	2 cut(s)	253, 507
HpyCH4III	ACNGT	1 cut(s)	528
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	4 cut(s)	120, 224, 229, 446
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 44, 117, 274, 287
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	2 cut(s)	17, 111
Hsp92II	CATG	1 cut(s)	224
HspAI	GCGC	1 cut(s)	17
KasI	GGCGCC	1 cut(s)	16
KspI	CCGCGG	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	4 cut(s)	36, 318, 348, 419
Lsp1109I	GCAGC	1 cut(s)	132
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	4 cut(s)	195, 300, 373, 522
MluCI	AATT	1 cut(s)	318
Mly113I	GGCGCC	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	8 cut(s)	4, 28, 49, 121, 180, 183, 264, 414
Mph1103I	ATGCAT	1 cut(s)	226
MseI	TTAA	3 cut(s)	252, 309, 515
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	2 cut(s)	47, 409
MspI	CCGG	2 cut(s)	23, 305
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	5 cut(s)	23, 44, 117, 274, 287
NarI	GGCGCC	1 cut(s)	17
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	18
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	3 cut(s)	300, 373, 522
NsiI	ATGCAT	1 cut(s)	226
PaeR7I	CTCGAG	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	2 cut(s)	80, 108
PfeI	GAWTC	3 cut(s)	50, 178, 412
PinAI	ACCGGT	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	16, 122
PleI	GAGTC	1 cut(s)	99
PluTI	GGCGCC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	158
SacII	CCGCGG	1 cut(s)	48
SaqAI	TTAA	3 cut(s)	252, 309, 515
SatI	GCNGC	2 cut(s)	15, 121
SchI	GAGTC	1 cut(s)	99
SetI	ASST	7 cut(s)	68, 102, 132, 249, 279, 335, 411
SfoI	GGCGCC	1 cut(s)	18
Sfr274I	CTCGAG	1 cut(s)	450
Sfr303I	CCGCGG	1 cut(s)	48
SgrAI	CRCCGGYG	1 cut(s)	22
SgrBI	CCGCGG	1 cut(s)	48
SlaI	CTCGAG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
Sse9I	AATT	1 cut(s)	318
SsiI	CCGC	4 cut(s)	14, 45, 47, 378
SspDI	GGCGCC	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	485
TaaI	ACNGT	1 cut(s)	528
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	2 cut(s)	451, 500
TasI	AATT	1 cut(s)	318
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	3 cut(s)	50, 178, 412
Tru1I	TTAA	3 cut(s)	252, 309, 515
Tru9I	TTAA	3 cut(s)	252, 309, 515
TseFI	GTSAC	3 cut(s)	300, 373, 522
TseI	GCWGC	1 cut(s)	120
Tsp45I	GTSAC	3 cut(s)	300, 373, 522
TspDTI	ATGAA	2 cut(s)	17, 399
TspGWI	ACGGA	1 cut(s)	246
XhoI	CTCGAG	1 cut(s)	450
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.