Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Forward (+)

14035893 .. 14037365

Gene Structure 1473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAAGATTATGCCGGTGCAGAAGCAGACCCGGGCCGGTCAGCGAACCCGGTTCAAGGCCTTCGTGGTGGTCGGGGACACGAACGGGCACGTCGGGCTCGGCGTGAAGTGCAGCAAGGAGGTGGCGACTGCGATTCGCGGCGCAATTATATTGGCTAAGCTGTCTGTGATTCCGGTGAGGAGAGGGTACTGGGGTAACAAGATTGGTAAGCCCCATACAGTGCCGTGTAAGGTGACCGGGAAGTGTGGGTCTGTCACGGTGAGGATGGTGCCCGCTCCCCGTGGTTCCGGGATTGTGGCTGCCCGTGTGCCCAAGAAGGTGTTGCAGTTTGCTGGTATTGATGATGTCTTCACTTCATCCCGTGGCTCCACCAAGACCCTCGGCAATTTCGTCAAGGCCACTTTCGATTGCCTCCTGAAGACTTACGGTTTCTTGACACCTGAGTTCTGGAAAGAGACACGCTTCACCAGTTCTCCGTTCCAGGAGTTCACCGACTTTCTGGGAAAGCCAACTAAACCCCTTCTTATCGAAGATGTTGAGAAAGTAGAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

185

Amino Acids

20.09

Weight (kDa)

10.14

Isoelectric Point (pI)

21.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	1 - 60	1.1e-27	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	80 - 152	3.5e-25	Ribosomal protein S5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	268
AccBSI	CCGCTC	1 cut(s)	275
AccII	CGCG	1 cut(s)	138
AciI	CCGC	2 cut(s)	138, 273
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	55
AjiI	CACGTC	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	449
Ama87I	CYCGRG	1 cut(s)	30
AoxI	GGCC	3 cut(s)	33, 57, 396
ApeKI	GCWGC	2 cut(s)	111, 299
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	5 cut(s)	31, 32, 49, 238, 289
AsuHPI	GGTGA	5 cut(s)	187, 244, 271, 457, 481
AvaI	CYCGRG	1 cut(s)	30
BaeGI	GKGCMC	3 cut(s)	90, 273, 312
BaeI	ACNNNNGTAYC	2 cut(s)	178, 211
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	99
BbsI	GAAGAC	2 cut(s)	340, 425
BbvI	GCAGC	2 cut(s)	123, 286
BccI	CCATC	1 cut(s)	259
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	482
BcnI	CCSGG	5 cut(s)	31, 32, 49, 238, 289
BcoDI	GTCTC	1 cut(s)	449
BfaI	CTAG	1 cut(s)	553
BisI	GCNGC	3 cut(s)	112, 139, 300
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	3 cut(s)	113, 140, 301
Bme1390I	CCNGG	6 cut(s)	31, 32, 49, 238, 289, 482
BmeT110I	CYCGRG	1 cut(s)	30
BmgBI	CACGTC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	3 cut(s)	270, 286, 367
BmrFI	CCNGG	6 cut(s)	31, 32, 49, 238, 289, 482
BmrI	ACTGGG	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	199
BpiI	GAAGAC	2 cut(s)	340, 425
Bpu1102I	GCTNAGC	1 cut(s)	156
BpuMI	CCSGG	5 cut(s)	31, 32, 49, 238, 289
BsaJI	CCNNGG	4 cut(s)	30, 280, 361, 379
BsaWI	WCCGGW	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	457, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse118I	RCCGGY	2 cut(s)	13, 35
Bse1I	ACTGG	2 cut(s)	194, 468
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	4 cut(s)	30, 280, 361, 379
BseGI	GGATG	2 cut(s)	270, 356
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	2 cut(s)	194, 468
BseRI	GAGGAG	1 cut(s)	193
BseSI	GKGCMC	3 cut(s)	90, 273, 312
BseXI	GCAGC	2 cut(s)	123, 286
BsgI	GTGCAG	2 cut(s)	38, 130
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	3 cut(s)	35, 59, 398
BshNI	GGYRCC	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	30
BsiSI	CCGG	7 cut(s)	14, 31, 36, 49, 173, 237, 288
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	449
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	3 cut(s)	35, 59, 398
BsoBI	CYCGRG	1 cut(s)	30
Bsp1286I	GDGCHC	4 cut(s)	90, 99, 273, 312
Bsp1720I	GCTNAGC	1 cut(s)	156
BspACI	CCGC	2 cut(s)	138, 273
BspANI	GGCC	3 cut(s)	35, 59, 398
BspCNI	CTCAG	1 cut(s)	433
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	3 cut(s)	270, 286, 367
BspT107I	GGYRCC	1 cut(s)	268
BsrBI	CCGCTC	1 cut(s)	275
BsrFI	RCCGGY	2 cut(s)	13, 35
BsrI	ACTGG	2 cut(s)	194, 468
BssAI	RCCGGY	2 cut(s)	13, 35
BssECI	CCNNGG	4 cut(s)	30, 280, 361, 379
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	3 cut(s)	220, 259, 428
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	2 cut(s)	156, 441
BstDSI	CCRYGG	2 cut(s)	280, 361
BstEII	GGTNACC	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	270, 356
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	143
BstMAI	GTCTC	1 cut(s)	449
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 108
BstNI	CCWGG	1 cut(s)	482
BstPI	GGTNACC	1 cut(s)	232
BstSCI	CCNGG	6 cut(s)	29, 30, 47, 236, 287, 480
BstSLI	GKGCMC	3 cut(s)	90, 273, 312
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	123, 286
BstV2I	GAAGAC	2 cut(s)	340, 425
BsuRI	GGCC	3 cut(s)	35, 59, 398
BtgI	CCRYGG	2 cut(s)	280, 361
BtrI	CACGTC	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	270, 356
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	1 cut(s)	143
Cfr10I	RCCGGY	2 cut(s)	13, 35
Cfr13I	GGNCC	1 cut(s)	33
Cfr9I	CCCGGG	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	187
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	2 cut(s)	156, 441
Eco147I	AGGCCT	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	30
Eco91I	GGTNACC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	99
FaiI	YATR	3 cut(s)	11, 149, 216
FaqI	GGGAC	1 cut(s)	89
FauI	CCCGC	1 cut(s)	280
Fnu4HI	GCNGC	3 cut(s)	112, 139, 300
FokI	GGATG	2 cut(s)	277, 343
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	3 cut(s)	112, 139, 300
FspBI	CTAG	1 cut(s)	553
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	3 cut(s)	112, 139, 300
HaeIII	GGCC	3 cut(s)	35, 59, 398
HapII	CCGG	7 cut(s)	14, 31, 36, 49, 173, 237, 288
HhaI	GCGC	1 cut(s)	143
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HinfI	GANTC	2 cut(s)	133, 169
HpaII	CCGG	7 cut(s)	14, 31, 36, 49, 173, 237, 288
HphI	GGTGA	5 cut(s)	187, 244, 271, 457, 481
Hpy166II	GTNNAC	1 cut(s)	489
Hpy188III	TCNNGA	3 cut(s)	415, 433, 448
Hpy8I	GTNNAC	1 cut(s)	489
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	70, 310, 530
HpyCH4III	ACNGT	3 cut(s)	220, 259, 428
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	3 cut(s)	19, 111, 325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 108
HpyF3I	CTNAG	2 cut(s)	156, 441
HpySE526I	ACGT	1 cut(s)	90
HspAI	GCGC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	280, 371
Lsp1109I	GCAGC	2 cut(s)	123, 286
MaeI	CTAG	1 cut(s)	553
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	3 cut(s)	194, 232, 253
MbiI	CCGCTC	1 cut(s)	275
MboII	GAAGA	4 cut(s)	16, 340, 430, 542
MhlI	GDGCHC	4 cut(s)	90, 99, 273, 312
MluCI	AATT	2 cut(s)	144, 385
MnlI	CCTC	6 cut(s)	112, 171, 176, 255, 389, 422
MspI	CCGG	7 cut(s)	14, 31, 36, 49, 173, 237, 288
MspR9I	CCNGG	6 cut(s)	31, 32, 49, 238, 289, 482
MvaI	CCWGG	1 cut(s)	482
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	94, 108
NciI	CCSGG	5 cut(s)	31, 32, 49, 238, 289
NlaIV	GGNNCC	3 cut(s)	270, 286, 367
NmeAIII	GCCGAG	2 cut(s)	78, 360
NmuCI	GTSAC	2 cut(s)	232, 253
PceI	AGGCCT	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 387
PfeI	GAWTC	2 cut(s)	133, 169
PfoI	TCCNGGA	2 cut(s)	287, 480
PkrI	GCNGC	3 cut(s)	113, 140, 301
Psp6I	CCWGG	1 cut(s)	480
PspEI	GGTNACC	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	3 cut(s)	270, 286, 367
PspPI	GGNCC	1 cut(s)	33
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SatI	GCNGC	3 cut(s)	112, 139, 300
Sau96I	GGNCC	1 cut(s)	33
ScrFI	CCNGG	6 cut(s)	31, 32, 49, 238, 289, 482
SduI	GDGCHC	4 cut(s)	90, 99, 273, 312
SetI	ASST	6 cut(s)	93, 123, 162, 234, 321, 442
SmaI	CCCGGG	1 cut(s)	32
Sse9I	AATT	2 cut(s)	144, 385
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	2 cut(s)	138, 273
SspMI	CTAG	1 cut(s)	553
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	6 cut(s)	29, 30, 47, 236, 287, 480
TaaI	ACNGT	3 cut(s)	220, 259, 428
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	2 cut(s)	405, 528
TasI	AATT	2 cut(s)	144, 385
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	2 cut(s)	133, 169
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	2 cut(s)	232, 253
TseI	GCWGC	2 cut(s)	111, 299
Tsp45I	GTSAC	2 cut(s)	232, 253
TspDTI	ATGAA	2 cut(s)	17, 345
TspGWI	ACGGA	1 cut(s)	465
TspMI	CCCGGG	1 cut(s)	30
TspRI	CASTG	1 cut(s)	225
XmaI	CCCGGG	1 cut(s)	30
XspI	CTAG	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.