Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Forward (+)

16282264 .. 16283724

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00345770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCTTCTTCGTCGTTGAGATCTTCGTTGACGATAACGGCAGCGGCCGTTGTGAACAATGGCGAGCGGAAGGTTCGAAAGGTAGCAACTCCATCCCGCTCGGCAAACGACTTTGTCTGTTTGATTCAAGCCGGCGTCTTCCTCGACTTTATGGATGAAAGAGGAGGCGGCGTCACCGGCGAGCGTGGAGGCTTCGGCCGGAATCGGAGGCTACAAGGTCTTTGTCGTCGTCGGCAACGCAAAAGCCATGTCGGACTCGGCGTCGAAGGGCAGCGAGGAGGTTGCTACGCTATTCGTGGAGCCATTATTGTGGCTAAGCTGTGGGTGATTCCTATGAGGAGGGGTTACAAGATCGGAAAGCCCCACACCATGCATTGCAAGGTCACCGGAAAGTGGGGTCTACCAAGACTCTCGAAACTTTGTCAAGGAATAATGATTAAGCTATTTAAAGTGAAGGAAAAGCAAAGGGAGCTTGCTGAAAATGCCAATGGAAAGTCACCGGTTAAGAAGCAAAGTTCTGGAGAATTACAAAGATTGTGTCATTCTTTGTATTCAACAATGGCTGGTGAAGTAGTGACCACAAATGAAAATGGCAATGGCAACATCCAGCTGAATCCACAGAGGACTTACCAAGTTGTTGTGGTTGCAACTCGAGAAATGGGTATTGGAAAGGATGGGAAACAGCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004146 GO:0004799 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0009058 GO:0009108 GO:0009256 GO:0009257 GO:0009396 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0019752 GO:0032259 GO:0034641 GO:0042083 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046653 GO:0046654 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00670 ko00790 ko01100 map00240 map00670 map00790 map01100

Pfam Domains

Protein Families

DHFR_1 Thymidylat_synt

Protein Analysis

230

Amino Acids

25.28

Weight (kDa)

10.57

Isoelectric Point (pI)

34.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	67, 99
AccI	GTMKAC	1 cut(s)	400
AciI	CCGC	4 cut(s)	44, 67, 97, 168
AcoI	YGGCCR	2 cut(s)	45, 196
AcyI	GRCGYC	3 cut(s)	135, 171, 261
AfiI	CCNNNNNNNGG	1 cut(s)	393
AgeI	ACCGGT	1 cut(s)	499
AgsI	TTSAA	2 cut(s)	128, 555
AhdI	GACNNNNNGTC	1 cut(s)	260
AjuI	GAANNNNNNNTTGG	2 cut(s)	648, 680
AluBI	AGCT	4 cut(s)	319, 442, 472, 610
AluI	AGCT	4 cut(s)	319, 442, 472, 610
Ama87I	CYCGRG	1 cut(s)	651
AoxI	GGCC	2 cut(s)	45, 196
ApeKI	GCWGC	2 cut(s)	41, 271
ArsI	GACNNNNNNTTYG	4 cut(s)	234, 266, 523, 555
AsiGI	ACCGGT	1 cut(s)	499
AsuHPI	GGTGA	5 cut(s)	166, 337, 376, 489, 578
AsuII	TTCGAA	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	651
BbsI	GAAGAC	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	53, 283
BccI	CCATC	2 cut(s)	100, 668
BceAI	ACGGC	2 cut(s)	32, 54
BcgI	CGANNNNNNTGC	2 cut(s)	264, 298
BglII	AGATCT	1 cut(s)	20
BisI	GCNGC	4 cut(s)	42, 45, 169, 272
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	4 cut(s)	43, 46, 170, 273
BmeRI	GACNNNNNGTC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	651
BmiI	GGNNCC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	540
Bpu1102I	GCTNAGC	1 cut(s)	315
Bpu14I	TTCGAA	1 cut(s)	76
BsaHI	GRCGYC	3 cut(s)	135, 171, 261
BsaJI	CCNNGG	1 cut(s)	686
BsaWI	WCCGGW	2 cut(s)	386, 499
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
Bse118I	RCCGGY	3 cut(s)	131, 176, 499
Bse3DI	GCAATG	2 cut(s)	373, 601
BseDI	CCNNGG	1 cut(s)	686
BseGI	GGATG	4 cut(s)	92, 160, 603, 679
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseMI	GCAATG	2 cut(s)	373, 601
BseRI	GAGGAG	3 cut(s)	177, 291, 352
BseX3I	CGGCCG	2 cut(s)	45, 196
BseXI	GCAGC	2 cut(s)	53, 283
Bsh1285I	CGRYCG	2 cut(s)	48, 199
BshFI	GGCC	2 cut(s)	47, 198
BshTI	ACCGGT	1 cut(s)	499
BsiEI	CGRYCG	2 cut(s)	48, 199
BsiHKCI	CYCGRG	1 cut(s)	651
BsiSI	CCGG	5 cut(s)	132, 177, 199, 387, 500
BslI	CCNNNNNNNGG	1 cut(s)	393
BsnI	GGCC	2 cut(s)	47, 198
BsoBI	CYCGRG	1 cut(s)	651
Bsp119I	TTCGAA	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	20, 351
Bsp1720I	GCTNAGC	1 cut(s)	315
BspACI	CCGC	4 cut(s)	44, 67, 97, 168
BspANI	GGCC	2 cut(s)	47, 198
BspLI	GGNNCC	1 cut(s)	301
BspT104I	TTCGAA	1 cut(s)	76
BsrBI	CCGCTC	2 cut(s)	67, 99
BsrDI	GCAATG	2 cut(s)	373, 601
BsrFI	RCCGGY	3 cut(s)	131, 176, 499
BssAI	RCCGGY	3 cut(s)	131, 176, 499
BssECI	CCNNGG	1 cut(s)	686
BssMI	GATC	2 cut(s)	20, 351
BssNI	GRCGYC	3 cut(s)	135, 171, 261
BssT1I	CCWWGG	1 cut(s)	686
BstACI	GRCGYC	3 cut(s)	135, 171, 261
BstBI	TTCGAA	1 cut(s)	76
BstC8I	GCNNGC	4 cut(s)	65, 133, 182, 474
BstDEI	CTNAG	1 cut(s)	315
BstEII	GGTNACC	1 cut(s)	382
BstF5I	GGATG	4 cut(s)	92, 160, 603, 679
BstKTI	GATC	2 cut(s)	23, 354
BstMBI	GATC	2 cut(s)	20, 351
BstMCI	CGRYCG	2 cut(s)	48, 199
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 469, 482
BstPI	GGTNACC	1 cut(s)	382
BstV1I	GCAGC	2 cut(s)	53, 283
BstV2I	GAAGAC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	20
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	20
BstZI	CGGCCG	2 cut(s)	45, 196
BsuRI	GGCC	2 cut(s)	47, 198
BtsCI	GGATG	4 cut(s)	92, 160, 603, 679
Cac8I	GCNNGC	4 cut(s)	65, 133, 182, 474
Cfr10I	RCCGGY	3 cut(s)	131, 176, 499
CseI	GACGC	3 cut(s)	124, 160, 250
CspAI	ACCGGT	1 cut(s)	499
CviAII	CATG	2 cut(s)	248, 370
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	2 cut(s)	22, 353
DpnII	GATC	2 cut(s)	20, 351
DraI	TTTAAA	1 cut(s)	448
DriI	GACNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	2 cut(s)	45, 196
EagI	CGGCCG	2 cut(s)	45, 196
Eam1105I	GACNNNNNGTC	1 cut(s)	260
EclXI	CGGCCG	2 cut(s)	45, 196
Eco130I	CCWWGG	1 cut(s)	686
Eco52I	CGGCCG	2 cut(s)	45, 196
Eco88I	CYCGRG	1 cut(s)	651
Eco91I	GGTNACC	1 cut(s)	382
EcoO65I	GGTNACC	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	686
EcoT22I	ATGCAT	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	686
FaeI	CATG	2 cut(s)	251, 373
FaiI	YATR	4 cut(s)	152, 249, 335, 371
FatI	CATG	2 cut(s)	247, 369
FauI	CCCGC	1 cut(s)	104
FblI	GTMKAC	1 cut(s)	400
Fnu4HI	GCNGC	4 cut(s)	42, 45, 169, 272
FokI	GGATG	4 cut(s)	79, 167, 590, 686
Fsp4HI	GCNGC	4 cut(s)	42, 45, 169, 272
GluI	GCNGC	4 cut(s)	42, 45, 169, 272
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	2 cut(s)	47, 198
HapII	CCGG	5 cut(s)	132, 177, 199, 387, 500
HgaI	GACGC	3 cut(s)	124, 160, 250
Hin1I	GRCGYC	3 cut(s)	135, 171, 261
Hin1II	CATG	2 cut(s)	251, 373
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	6 cut(s)	124, 202, 255, 328, 408, 613
HpaII	CCGG	5 cut(s)	132, 177, 199, 387, 500
HphI	GGTGA	5 cut(s)	166, 337, 376, 489, 578
Hpy166II	GTNNAC	3 cut(s)	30, 55, 401
Hpy188I	TCNGA	3 cut(s)	207, 254, 356
Hpy188III	TCNNGA	3 cut(s)	412, 519, 653
Hpy8I	GTNNAC	3 cut(s)	30, 55, 401
Hpy99I	CGWCG	4 cut(s)	16, 231, 234, 266
HpyAV	CCTTC	3 cut(s)	64, 260, 448
HpyCH4V	TGCA	3 cut(s)	373, 378, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 469, 482
HpyF3I	CTNAG	1 cut(s)	315
Hsp92I	GRCGYC	3 cut(s)	135, 171, 261
Hsp92II	CATG	2 cut(s)	251, 373
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	20, 351
LmnI	GCTCC	2 cut(s)	299, 469
LpnPI	CCDG	8 cut(s)	145, 190, 212, 400, 504, 513, 549, 620
Lsp1109I	GCAGC	2 cut(s)	53, 283
MaeIII	GTNAC	5 cut(s)	172, 344, 382, 495, 574
MalI	GATC	2 cut(s)	22, 353
MbiI	CCGCTC	2 cut(s)	67, 99
MboI	GATC	2 cut(s)	20, 351
MboII	GAAGA	2 cut(s)	15, 130
MflI	RGATCY	1 cut(s)	20
MluCI	AATT	1 cut(s)	524
MlyI	GAGTC	2 cut(s)	249, 402
MmeI	TCCRAC	1 cut(s)	232
Mph1103I	ATGCAT	1 cut(s)	375
MroNI	GCCGGC	1 cut(s)	131
MseI	TTAA	3 cut(s)	438, 447, 504
MslI	CAYNNNNRTG	1 cut(s)	308
MspA1I	CMGCKG	2 cut(s)	44, 610
MspI	CCGG	5 cut(s)	132, 177, 199, 387, 500
MwoI	GCNNNNNNNGC	3 cut(s)	177, 469, 482
NaeI	GCCGGC	1 cut(s)	133
NdeII	GATC	2 cut(s)	20, 351
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	2 cut(s)	251, 373
NlaIV	GGNNCC	1 cut(s)	301
NmeAIII	GCCGAG	2 cut(s)	80, 237
NmuCI	GTSAC	4 cut(s)	172, 382, 495, 574
NsiI	ATGCAT	1 cut(s)	375
NspV	TTCGAA	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	651
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	133
PfeI	GAWTC	4 cut(s)	124, 202, 328, 613
PflFI	GACNNNGTC	1 cut(s)	113
PinAI	ACCGGT	1 cut(s)	499
PkrI	GCNGC	4 cut(s)	43, 46, 170, 273
PleI	GAGTC	2 cut(s)	249, 402
PpsI	GAGTC	2 cut(s)	249, 402
PspEI	GGTNACC	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	20
PsyI	GACNNNGTC	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	610
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	3 cut(s)	438, 447, 504
SatI	GCNGC	4 cut(s)	42, 45, 169, 272
Sau3AI	GATC	2 cut(s)	20, 351
SchI	GAGTC	2 cut(s)	249, 402
SetI	ASST	9 cut(s)	75, 84, 220, 283, 321, 384, 444, 474, 612
Sfr274I	CTCGAG	1 cut(s)	651
SfuI	TTCGAA	1 cut(s)	76
SgrAI	CRCCGGYG	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	651
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	651
SmoI	CTYRAG	1 cut(s)	651
Sse9I	AATT	1 cut(s)	524
SsiI	CCGC	4 cut(s)	44, 67, 97, 168
StyI	CCWWGG	1 cut(s)	686
TaqI	TCGA	5 cut(s)	76, 144, 264, 413, 652
TasI	AATT	1 cut(s)	524
TauI	GCSGC	2 cut(s)	47, 171
TfiI	GAWTC	4 cut(s)	124, 202, 328, 613
Tru1I	TTAA	3 cut(s)	438, 447, 504
Tru9I	TTAA	3 cut(s)	438, 447, 504
TseFI	GTSAC	4 cut(s)	172, 382, 495, 574
TseI	GCWGC	2 cut(s)	41, 271
Tsp45I	GTSAC	4 cut(s)	172, 382, 495, 574
TspDTI	ATGAA	2 cut(s)	171, 600
Tth111I	GACNNNGTC	1 cut(s)	113
XhoI	CTCGAG	1 cut(s)	651
XmiI	GTMKAC	1 cut(s)	400
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.