Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Forward (+)

71504976 .. 71507074

Gene Structure 2099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG508900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGATGAAAGAGGAGGCAGCGCCGCTGGCGAGCGTGGAGGCTTCGATCGCAGAATCGGAGGCTTCAAGGTCTTTGTCGTCTTCAGCGACAGCAAAAGCCACGTCGGACTCGGTGTAAAGTGCAGCAAGGAAGTTGCTATTCGTGGACCCATTATTGTGGCTAAGCTATGGGTGATTCCTATGAGGAGGGGTTACAAGATCGGAAAGCCCCACACCATGCATTGCAAGGTCACCGGAAAGTGTGGCTCTGTTATCGTGAGGATGGTGCCTGCTCCTTGTGGTTCTGGTATTGTGGTGGCTAGGGTTCCCAAGAAGGTGTTCCAATTTGCTGGTATTGATGATGTGTTCACTTCATCCAGGGGGTCTACCAAGAGTCTCGAAACTTTGTCAAGGTTTGCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

134

Amino Acids

14.34

Weight (kDa)

10.34

Isoelectric Point (pI)

19.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	18 - 61	3.7e-07	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	79 - 126	3.9e-14	Ribosomal protein S5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	365
AciI	CCGC	1 cut(s)	24
AcuI	CTGAAG	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	67
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	356
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	380
ApeKI	GCWGC	2 cut(s)	18, 123
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
Asp700I	GAANNNNTTC	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	2 cut(s)	184, 223
AvaII	GGWCC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	30, 135
BccI	CCATC	1 cut(s)	256
BciT130I	CCWGG	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	380
BfaI	CTAG	1 cut(s)	300
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	3 cut(s)	19, 24, 124
BlpI	GCTNAGC	1 cut(s)	162
BlsI	GCNGC	3 cut(s)	20, 25, 125
Bme1390I	CCNGG	1 cut(s)	358
Bme18I	GGWCC	1 cut(s)	146
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	3 cut(s)	148, 267, 306
BmrFI	CCNGG	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	73
Bpu1102I	GCTNAGC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	357
BsaWI	WCCGGW	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	3 cut(s)	10, 267, 353
BseMI	GCAATG	1 cut(s)	220
BseRI	GAGGAG	2 cut(s)	27, 199
BseXI	GCAGC	2 cut(s)	30, 135
BsgI	GTGCAG	1 cut(s)	142
Bsh1285I	CGRYCG	1 cut(s)	49
BshNI	GGYRCC	1 cut(s)	265
BsiEI	CGRYCG	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	380
Bsp143I	GATC	2 cut(s)	46, 198
Bsp1720I	GCTNAGC	1 cut(s)	162
BspACI	CCGC	1 cut(s)	24
BspLI	GGNNCC	3 cut(s)	148, 267, 306
BspT107I	GGYRCC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	2 cut(s)	46, 198
Bst2UI	CCWGG	1 cut(s)	358
BstC8I	GCNNGC	3 cut(s)	28, 32, 270
BstDEI	CTNAG	1 cut(s)	162
BstEII	GGTNACC	1 cut(s)	229
BstF5I	GGATG	3 cut(s)	10, 267, 353
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	2 cut(s)	49, 201
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	2 cut(s)	46, 198
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 48
BstNI	CCWGG	1 cut(s)	358
BstPI	GGTNACC	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	356
BstV1I	GCAGC	2 cut(s)	30, 135
BstV2I	GAAGAC	1 cut(s)	73
BstXI	CCANNNNNNTGG	2 cut(s)	157, 329
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	3 cut(s)	10, 267, 353
Cac8I	GCNNGC	3 cut(s)	28, 32, 270
CfoI	GCGC	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	146
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	8 cut(s)	42, 63, 99, 161, 166, 208, 246, 299
CviKI_1	RGCY	8 cut(s)	42, 63, 99, 161, 166, 208, 246, 299
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	2 cut(s)	48, 200
DpnII	GATC	2 cut(s)	46, 198
Eco47I	GGWCC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	67
Eco91I	GGTNACC	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	356
EcoT22I	ATGCAT	1 cut(s)	222
FaeI	CATG	1 cut(s)	220
FaiI	YATR	3 cut(s)	169, 182, 218
FalI	AAGNNNNNCTT	1 cut(s)	382
FatI	CATG	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	365
Fnu4HI	GCNGC	3 cut(s)	19, 24, 124
FokI	GGATG	3 cut(s)	17, 274, 340
Fsp4HI	GCNGC	3 cut(s)	19, 24, 124
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	3 cut(s)	19, 24, 124
HaeII	RGCGCY	1 cut(s)	24
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HinfI	GANTC	4 cut(s)	54, 108, 175, 373
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	2 cut(s)	184, 223
Hpy166II	GTNNAC	3 cut(s)	146, 348, 366
Hpy188I	TCNGA	3 cut(s)	59, 107, 203
Hpy188III	TCNNGA	2 cut(s)	256, 377
Hpy8I	GTNNAC	3 cut(s)	146, 348, 366
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	3 cut(s)	123, 220, 225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 48
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	46, 198
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	7 cut(s)	12, 247, 270, 282, 315, 343, 370
Lsp1109I	GCAGC	2 cut(s)	30, 135
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	2 cut(s)	191, 229
MalI	GATC	2 cut(s)	48, 200
MboI	GATC	2 cut(s)	46, 198
MboII	GAAGA	1 cut(s)	73
MluCI	AATT	1 cut(s)	323
MlyI	GAGTC	2 cut(s)	102, 382
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	7 cut(s)	5, 8, 32, 53, 177, 180, 252
Mph1103I	ATGCAT	1 cut(s)	222
MroXI	GAANNNNTTC	1 cut(s)	317
MseI	TTAA	1 cut(s)	403
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	2 cut(s)	27, 48
NdeII	GATC	2 cut(s)	46, 198
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	3 cut(s)	148, 267, 306
NmuCI	GTSAC	1 cut(s)	229
NsiI	ATGCAT	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	54, 175
PkrI	GCNGC	3 cut(s)	20, 25, 125
Ple19I	CGATCG	1 cut(s)	49
PleI	GAGTC	2 cut(s)	102, 381
PpsI	GAGTC	2 cut(s)	102, 381
Psp6I	CCWGG	1 cut(s)	356
PspEI	GGTNACC	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	3 cut(s)	148, 267, 306
PspPI	GGNCC	1 cut(s)	146
PvuI	CGATCG	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	403
SatI	GCNGC	3 cut(s)	19, 24, 124
Sau3AI	GATC	2 cut(s)	46, 198
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	2 cut(s)	102, 382
ScrFI	CCNGG	1 cut(s)	358
SetI	ASST	6 cut(s)	72, 105, 168, 231, 318, 395
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	323
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	356
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	45, 378
TasI	AATT	1 cut(s)	323
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	2 cut(s)	54, 175
Tru1I	TTAA	1 cut(s)	403
Tru9I	TTAA	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	2 cut(s)	18, 123
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	2 cut(s)	21, 342
VpaK11BI	GGWCC	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.