Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Reverse (-)

30737316 .. 30738880

Gene Structure 1565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1213700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGGCGGAGATACCAGCTGAGAGAGGCCGCGGACGCCGACCTGGCCGACGTGAAGAGGAAGAGATGTGGGTTCCAGTGACGAAGCTTGGCCGCCTTGTAAAGGAAGGTAAGATCCGTAACCTGGAGCATATCTATCTCTTCTTTATCCCTGTCAAGGATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

55

Amino Acids

6.42

Weight (kDa)

9.81

Isoelectric Point (pI)

68.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	30
AciI	CCGC	4 cut(s)	5, 28, 30, 91
AclWI	GGATC	1 cut(s)	106
AcoI	YGGCCR	2 cut(s)	43, 88
AcyI	GRCGYC	1 cut(s)	34
AfiI	CCNNNNNNNGG	3 cut(s)	100, 121, 154
AjiI	CACGTC	1 cut(s)	50
AjnI	CCWGG	2 cut(s)	40, 120
AluBI	AGCT	2 cut(s)	17, 85
AluI	AGCT	2 cut(s)	17, 85
AlwI	GGATC	1 cut(s)	106
AoxI	GGCC	3 cut(s)	25, 43, 88
BciT130I	CCWGG	2 cut(s)	42, 122
BfaI	CTAG	1 cut(s)	163
BglI	GCCNNNNNGGC	1 cut(s)	42
BisI	GCNGC	2 cut(s)	28, 91
BlsI	GCNGC	2 cut(s)	29, 92
Bme1390I	CCNGG	2 cut(s)	42, 122
BmgBI	CACGTC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	42, 122
BpmI	CTGGAG	1 cut(s)	143
BsaHI	GRCGYC	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 121, 154
Bse1I	ACTGG	1 cut(s)	74
BseBI	CCWGG	2 cut(s)	42, 122
BseDI	CCNNGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	3 cut(s)	100, 121, 154
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	3 cut(s)	27, 45, 90
BslI	CCNNNNNNNGG	3 cut(s)	100, 121, 154
BsnI	GGCC	3 cut(s)	27, 45, 90
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	4 cut(s)	5, 28, 30, 91
BspANI	GGCC	3 cut(s)	27, 45, 90
BspCNI	CTCAG	1 cut(s)	10
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	111
BssNI	GRCGYC	1 cut(s)	34
Bst2UI	CCWGG	2 cut(s)	42, 122
Bst6I	CTCTTC	3 cut(s)	48, 54, 143
BstACI	GRCGYC	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	18
BstDSI	CCRYGG	1 cut(s)	28
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstFNI	CGCG	1 cut(s)	30
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 42
BstNI	CCWGG	2 cut(s)	42, 122
BstSCI	CCNGG	2 cut(s)	40, 120
BstUI	CGCG	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	27, 45, 90
BtgI	CCRYGG	1 cut(s)	28
BtrI	CACGTC	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	81
Cfr42I	CCGCGG	1 cut(s)	31
CseI	GACGC	1 cut(s)	42
CviJI	RGCY	5 cut(s)	17, 27, 45, 85, 90
CviKI_1	RGCY	5 cut(s)	17, 27, 45, 85, 90
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
EaeI	YGGCCR	2 cut(s)	43, 88
Eam1104I	CTCTTC	3 cut(s)	48, 54, 143
EarI	CTCTTC	3 cut(s)	48, 54, 143
EciI	GGCGGA	1 cut(s)	20
Eco32I	GATATC	1 cut(s)	160
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	40, 120
EcoRV	GATATC	1 cut(s)	160
FaiI	YATR	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	28, 91
Fsp4HI	GCNGC	2 cut(s)	28, 91
FspBI	CTAG	1 cut(s)	163
GluI	GCNGC	2 cut(s)	28, 91
GsuI	CTGGAG	1 cut(s)	143
HaeIII	GGCC	3 cut(s)	27, 45, 90
HgaI	GACGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	83
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 42
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	49
Hsp92I	GRCGYC	1 cut(s)	34
KspI	CCGCGG	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	6 cut(s)	27, 27, 54, 87, 107, 134
MaeI	CTAG	1 cut(s)	163
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	2 cut(s)	76, 116
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	3 cut(s)	65, 71, 130
MflI	RGATCY	1 cut(s)	111
MnlI	CCTC	2 cut(s)	17, 49
MspA1I	CMGCKG	2 cut(s)	17, 30
MspR9I	CCNGG	2 cut(s)	42, 122
MvaI	CCWGG	2 cut(s)	42, 122
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	33, 42
NdeII	GATC	1 cut(s)	111
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	29, 92
Psp6I	CCWGG	2 cut(s)	40, 120
PspGI	CCWGG	2 cut(s)	40, 120
PspN4I	GGNNCC	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	111
PvuII	CAGCTG	1 cut(s)	17
SacII	CCGCGG	1 cut(s)	31
SatI	GCNGC	2 cut(s)	28, 91
Sau3AI	GATC	1 cut(s)	111
ScrFI	CCNGG	2 cut(s)	42, 122
SetI	ASST	6 cut(s)	19, 43, 52, 87, 109, 123
Sfr303I	CCGCGG	1 cut(s)	31
SgrBI	CCGCGG	1 cut(s)	31
SsiI	CCGC	4 cut(s)	5, 28, 30, 91
SspMI	CTAG	1 cut(s)	163
StyD4I	CCNGG	2 cut(s)	40, 120
TaiI	ACGT	1 cut(s)	52
TauI	GCSGC	2 cut(s)	30, 93
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	76
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	81
XagI	CCTNNNNNAGG	1 cut(s)	98
XspI	CTAG	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.