Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Forward (+)

19511823 .. 19513028

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG112900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGATGAAAGCGGAGGCGGCGCCACTGGCGAGCGTGGAGGCTTCGGCCGCGGAATAGGAGGCTTCAAGGTCTTTGTCGTCGTCGGCGACAGCAAAAGCCATGTCGGACTCGGCGTCAAGTGCAGCAAGGAGGTTGCTACTGCTATTCGTGGAGCCATTATTGTGGCTAAGCTGTGGGTGATTCCTGTGAGGAGGGGTTACAAGATCGGAAAGCCCCACACCATGCATTGCAAGGTCACCGGAAAGTGTGGCTCTGTTATCGTGGGGATGGTGCTTGCTCCTCGTGGTTCTAGTATTGTGGTGGCTAGGGTTCCCAAGAAGGTGTTCCAATTTGCTGGTATTGATGATGTGTTCACTTCATCCAGGGGGTCTACCAAGACTCTCGAAACTTTGTCAAGGAAAAGCAAAGGGAGCTTGCTGAAAATGCCAATGGAAAGTCACCGGTTAAGAAGCAAAGTTCTGGAGAATTACATAGGCTTTACCCCACTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

164

Amino Acids

17.4

Weight (kDa)

10.4

Isoelectric Point (pI)

22.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	21 - 64	3.8e-15	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	81 - 128	2.7e-11	Ribosomal protein S5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	371
AccII	CGCG	1 cut(s)	51
AciI	CCGC	4 cut(s)	12, 18, 49, 51
AcoI	YGGCCR	1 cut(s)	46
AcyI	GRCGYC	2 cut(s)	21, 114
AgeI	ACCGGT	1 cut(s)	441
AgsI	TTSAA	1 cut(s)	67
AhdI	GACNNNNNGTC	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	362
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	2 cut(s)	172, 414
AluI	AGCT	2 cut(s)	172, 414
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	123
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
AsiGI	ACCGGT	1 cut(s)	441
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	23
AsuHPI	GGTGA	3 cut(s)	190, 229, 431
BanI	GGYRCC	1 cut(s)	20
BauI	CACGAG	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	364
BfaI	CTAG	2 cut(s)	291, 306
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	3 cut(s)	19, 49, 124
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	3 cut(s)	20, 50, 125
Bme1390I	CCNGG	1 cut(s)	364
BmeRI	GACNNNNNGTC	1 cut(s)	113
BmiI	GGNNCC	3 cut(s)	22, 154, 312
BmrFI	CCNGG	1 cut(s)	364
BpmI	CTGGAG	1 cut(s)	482
Bpu1102I	GCTNAGC	1 cut(s)	168
BsaHI	GRCGYC	2 cut(s)	21, 114
BsaJI	CCNNGG	2 cut(s)	49, 363
BsaWI	WCCGGW	2 cut(s)	239, 441
Bse118I	RCCGGY	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	2 cut(s)	49, 363
BseGI	GGATG	3 cut(s)	10, 273, 359
BseMI	GCAATG	1 cut(s)	226
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	2 cut(s)	205, 270
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	51
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	1 cut(s)	48
BshNI	GGYRCC	1 cut(s)	20
BshTI	ACCGGT	1 cut(s)	441
BsiEI	CGRYCG	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	240, 442
BsnI	GGCC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	204
Bsp1720I	GCTNAGC	1 cut(s)	168
BspACI	CCGC	4 cut(s)	12, 18, 49, 51
BspANI	GGCC	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	3 cut(s)	22, 154, 312
BspT107I	GGYRCC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	2 cut(s)	49, 363
BssMI	GATC	1 cut(s)	204
BssNI	GRCGYC	2 cut(s)	21, 114
BssSI	CACGAG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	364
BstACI	GRCGYC	2 cut(s)	21, 114
BstC8I	GCNNGC	3 cut(s)	32, 276, 416
BstDEI	CTNAG	1 cut(s)	168
BstDSI	CCRYGG	1 cut(s)	49
BstEII	GGTNACC	1 cut(s)	235
BstF5I	GGATG	3 cut(s)	10, 273, 359
BstFNI	CGCG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	6 cut(s)	18, 27, 48, 120, 411, 424
BstNI	CCWGG	1 cut(s)	364
BstPI	GGTNACC	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	362
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	135
BstXI	CCANNNNNNTGG	2 cut(s)	163, 335
BstZI	CGGCCG	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	49
BtsCI	GGATG	3 cut(s)	10, 273, 359
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	3 cut(s)	32, 276, 416
CfoI	GCGC	1 cut(s)	23
Cfr10I	RCCGGY	1 cut(s)	441
Cfr42I	CCGCGG	1 cut(s)	52
CseI	GACGC	1 cut(s)	103
CspAI	ACCGGT	1 cut(s)	441
CviAII	CATG	2 cut(s)	101, 223
DdeI	CTNAG	1 cut(s)	168
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
DriI	GACNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	46
EagI	CGGCCG	1 cut(s)	46
Eam1105I	GACNNNNNGTC	1 cut(s)	113
EclXI	CGGCCG	1 cut(s)	46
Eco52I	CGGCCG	1 cut(s)	46
Eco91I	GGTNACC	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	362
EcoT22I	ATGCAT	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
FaeI	CATG	2 cut(s)	104, 226
FaiI	YATR	4 cut(s)	102, 224, 473, 493
FatI	CATG	2 cut(s)	100, 222
FblI	GTMKAC	1 cut(s)	371
Fnu4HI	GCNGC	3 cut(s)	19, 49, 124
FokI	GGATG	3 cut(s)	17, 280, 346
Fsp4HI	GCNGC	3 cut(s)	19, 49, 124
FspBI	CTAG	2 cut(s)	291, 306
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	3 cut(s)	19, 49, 124
GsuI	CTGGAG	1 cut(s)	482
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	2 cut(s)	240, 442
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	2 cut(s)	21, 114
Hin1II	CATG	2 cut(s)	104, 226
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HinfI	GANTC	3 cut(s)	108, 181, 379
HpaII	CCGG	2 cut(s)	240, 442
HphI	GGTGA	3 cut(s)	190, 229, 431
Hpy166II	GTNNAC	2 cut(s)	354, 372
Hpy188I	TCNGA	2 cut(s)	107, 209
Hpy188III	TCNNGA	2 cut(s)	383, 461
Hpy8I	GTNNAC	2 cut(s)	354, 372
Hpy99I	CGWCG	2 cut(s)	83, 86
HpyAV	CCTTC	1 cut(s)	313
HpyCH4V	TGCA	3 cut(s)	123, 226, 231
HpyF10VI	GCNNNNNNNGC	6 cut(s)	18, 27, 48, 120, 411, 424
HpyF3I	CTNAG	1 cut(s)	168
Hsp92I	GRCGYC	2 cut(s)	21, 114
Hsp92II	CATG	2 cut(s)	104, 226
HspAI	GCGC	1 cut(s)	21
KasI	GGCGCC	1 cut(s)	20
KspI	CCGCGG	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	3 cut(s)	152, 283, 411
LpnPI	CCDG	8 cut(s)	12, 198, 253, 321, 349, 376, 446, 455
Lsp1109I	GCAGC	1 cut(s)	135
MaeI	CTAG	2 cut(s)	291, 306
MaeIII	GTNAC	3 cut(s)	197, 235, 437
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MluCI	AATT	2 cut(s)	329, 466
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	2 cut(s)	102, 373
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	7 cut(s)	8, 32, 53, 124, 183, 186, 291
Mph1103I	ATGCAT	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	1 cut(s)	446
MslI	CAYNNNNRTG	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	2 cut(s)	240, 442
MspR9I	CCNGG	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	364
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	6 cut(s)	18, 27, 48, 120, 411, 424
NarI	GGCGCC	1 cut(s)	21
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	2 cut(s)	104, 226
NlaIV	GGNNCC	3 cut(s)	22, 154, 312
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	2 cut(s)	235, 437
NsiI	ATGCAT	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 111
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	181
PinAI	ACCGGT	1 cut(s)	441
PkrI	GCNGC	3 cut(s)	20, 50, 125
PleI	GAGTC	2 cut(s)	102, 373
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	2 cut(s)	102, 373
Psp6I	CCWGG	1 cut(s)	362
PspEI	GGTNACC	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	3 cut(s)	22, 154, 312
RseI	CAYNNNNRTG	1 cut(s)	161
SacII	CCGCGG	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	3 cut(s)	19, 49, 124
Sau3AI	GATC	1 cut(s)	204
SchI	GAGTC	2 cut(s)	102, 373
ScrFI	CCNGG	1 cut(s)	364
SetI	ASST	6 cut(s)	72, 135, 174, 237, 324, 416
SfoI	GGCGCC	1 cut(s)	22
Sfr303I	CCGCGG	1 cut(s)	52
SgrBI	CCGCGG	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	329, 466
SsiI	CCGC	4 cut(s)	12, 18, 49, 51
SspDI	GGCGCC	1 cut(s)	20
SspMI	CTAG	2 cut(s)	291, 306
StyD4I	CCNGG	1 cut(s)	362
TaqI	TCGA	1 cut(s)	384
TasI	AATT	2 cut(s)	329, 466
TauI	GCSGC	2 cut(s)	21, 51
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	2 cut(s)	235, 437
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	2 cut(s)	235, 437
TspDTI	ATGAA	2 cut(s)	21, 348
TspRI	CASTG	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	2 cut(s)	291, 306
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.