RLG00000019545

Belongs to the universal ribosomal protein uS5 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
53364756 .. 53366297
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019545

Sequence Viewer

Length: 828 bp
ATGGCTGAAAGAGGAGGCGGCGCCGCTGGTGAGCGTGGAGGCTTCGGCCGCGGATTCGGAGGCCGCGGACGCGGAGGCGACCGTGGTCGCGGCGGCAGGCGTCGCGGTGCTGGCCGCCGTGACGAGGAGGAGAAATGGGTACCAGTGACCAAGCTCGGCCGTCTCGTCAAGGACGGCAAGATCTCATCTCTGGAGCAGATCTACCTCCACTCGCTCCCAATCAAGGAGCACCAGATCATCGACACACTCTGCCCTGGCCTCAAGGACGAGGTCATGAAGATCATGCCGGTCCAGAAGCAGACCCGGGCCGGTCAGAGGACCCGGTTCAAGGCCTTCGTCGTCGTCGGCGACAGCAACGGCCACGTCGGACTCGGCGTCAAGTGCAGCAAGGAGGTCGCCACCGCTATCCGTGGAGCGATTATTCTCGCCAAGCTTTCTGTGATTCCGGTGAGGCGGGGTTACTGGGGTAACAAGATTGGAAAACCCCATACCGTGCCTTGCAAGGTCACCGGAAAGTGTGGCTCTGTTACTGTGAGGATGGTGCCTGCTCCCCGTGGTTCCGGTATCGTGGCCGCTAGGGTTCCCAAGAAGGTGCTGCAGTTTGCTGGTATTGATGATGTGTTCACTTCATCCAGGGGGTCCACCAAGACTCTCGGAAACTTTGTCAAGGCAACTTTTGATTGTCTTCTGAAAACCTATGGTTTCTTGACACCTGAATTCTGGAGGGAGACTCGCTTCACAAAGTCCCCATTCCAAGAGCATACTGATCTTCTTGCCAAGCCAACTGGTAAGCTACTCCTGGACGCTGTTGAGAGGGTCGAGGCCTAA

Protein Analysis

276

Amino Acids

29.85

Weight (kDa)

10.35

Isoelectric Point (pI)

25.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S5 PF00333 87 - 151 4.3e-30 Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C PF03719 171 - 243 1.1e-24 Ribosomal protein S5, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 139
AccB1I GGYRCC 3 cut(s) 20, 139, 541
AccII CGCG 5 cut(s) 51, 66, 72, 90, 105
AcoI YGGCCR 5 cut(s) 46, 112, 157, 358, 570
AcsI RAATTY 1 cut(s) 716
AcyI GRCGYC 3 cut(s) 21, 100, 375
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 4 cut(s) 124, 223, 315, 328
AgsI TTSAA 1 cut(s) 328
AhdI GACNNNNNGTC 1 cut(s) 374
AjiI CACGTC 1 cut(s) 364
AjnI CCWGG 3 cut(s) 253, 632, 798
AluBI AGCT 3 cut(s) 154, 433, 793
AluI AGCT 3 cut(s) 154, 433, 793
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 2 cut(s) 167, 722
Ama87I CYCGRG 1 cut(s) 303
ApeKI GCWGC 2 cut(s) 384, 595
ApoI RAATTY 1 cut(s) 716
Asp718I GGTACC 1 cut(s) 139
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 4 cut(s) 289, 306, 318, 639
AsuC2I CCSGG 3 cut(s) 304, 305, 322
AsuHPI GGTGA 3 cut(s) 41, 460, 499
AvaI CYCGRG 1 cut(s) 303
AvaII GGWCC 3 cut(s) 289, 318, 639
BanI GGYRCC 3 cut(s) 20, 139, 541
BbsI GAAGAC 1 cut(s) 677
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 396, 582
BccI CCATC 1 cut(s) 532
BceAI ACGGC 4 cut(s) 102, 144, 190, 373
BcgI CGANNNNNNTGC 2 cut(s) 376, 410
BciT130I CCWGG 3 cut(s) 255, 634, 800
BcnI CCSGG 3 cut(s) 304, 305, 322
BcoDI GTCTC 2 cut(s) 167, 722
BfaI CTAG 1 cut(s) 576
BfmI CTRYAG 1 cut(s) 596
BfoI RGCGCY 1 cut(s) 24
BglII AGATCT 2 cut(s) 180, 198
Bme1390I CCNGG 6 cut(s) 255, 304, 305, 322, 634, 800
Bme18I GGWCC 3 cut(s) 289, 318, 639
BmeRI GACNNNNNGTC 1 cut(s) 374
BmeT110I CYCGRG 1 cut(s) 303
BmgBI CACGTC 1 cut(s) 364
BmgT120I GGNCC 4 cut(s) 289, 306, 318, 639
BmiI GGNNCC 7 cut(s) 22, 141, 320, 543, 559, 582, 640
BmrFI CCNGG 6 cut(s) 255, 304, 305, 322, 634, 800
BmrI ACTGGG 1 cut(s) 472
BmuI ACTGGG 1 cut(s) 472
BoxI GACNNNNGTC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 677
BplI GAGNNNNNCTC 2 cut(s) 715, 747
BpmI CTGGAG 2 cut(s) 212, 742
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 3 cut(s) 304, 305, 322
BsaHI GRCGYC 3 cut(s) 21, 100, 375
BsaJI CCNNGG 8 cut(s) 49, 64, 82, 253, 303, 409, 553, 633
BsaWI WCCGGW 3 cut(s) 445, 509, 560
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 223, 315, 328
Bse118I RCCGGY 2 cut(s) 286, 308
Bse1I ACTGG 3 cut(s) 143, 467, 790
BseBI CCWGG 3 cut(s) 255, 634, 800
BseDI CCNNGG 8 cut(s) 49, 64, 82, 253, 303, 409, 553, 633
BseGI GGATG 2 cut(s) 543, 629
BseLI CCNNNNNNNGG 4 cut(s) 124, 223, 315, 328
BseNI ACTGG 3 cut(s) 143, 467, 790
BseRI GAGGAG 3 cut(s) 27, 140, 143
BseX3I CGGCCG 2 cut(s) 46, 157
BseXI GCAGC 2 cut(s) 396, 582
BsgI GTGCAG 1 cut(s) 403
Bsh1236I CGCG 5 cut(s) 51, 66, 72, 90, 105
Bsh1285I CGRYCG 3 cut(s) 49, 82, 160
BshNI GGYRCC 3 cut(s) 20, 139, 541
BsiEI CGRYCG 3 cut(s) 49, 82, 160
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 303
BsiSI CCGG 7 cut(s) 287, 304, 309, 322, 446, 510, 561
BslFI GGGAC 1 cut(s) 730
BslI CCNNNNNNNGG 4 cut(s) 124, 223, 315, 328
BsmAI GTCTC 2 cut(s) 167, 722
BsmBI CGTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 730
BsoBI CYCGRG 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 5 cut(s) 180, 198, 234, 279, 766
BspFNI CGCG 5 cut(s) 51, 66, 72, 90, 105
BspHI TCATGA 1 cut(s) 273
BspLI GGNNCC 7 cut(s) 22, 141, 320, 543, 559, 582, 640
BspMAI CTGCAG 1 cut(s) 600
BspT107I GGYRCC 3 cut(s) 20, 139, 541
BsrFI RCCGGY 2 cut(s) 286, 308
BsrI ACTGG 3 cut(s) 143, 467, 790
BssAI RCCGGY 2 cut(s) 286, 308
BssECI CCNNGG 8 cut(s) 49, 64, 82, 253, 303, 409, 553, 633
BssMI GATC 5 cut(s) 180, 198, 234, 279, 766
BssNI GRCGYC 3 cut(s) 21, 100, 375
Bst2UI CCWGG 3 cut(s) 255, 634, 800
Bst4CI ACNGT 3 cut(s) 83, 493, 532
BstACI GRCGYC 3 cut(s) 21, 100, 375
BstC8I GCNNGC 3 cut(s) 98, 112, 546
BstDSI CCRYGG 5 cut(s) 49, 64, 82, 409, 553
BstEII GGTNACC 1 cut(s) 505
BstF5I GGATG 2 cut(s) 543, 629
BstFNI CGCG 5 cut(s) 51, 66, 72, 90, 105
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 5 cut(s) 183, 201, 237, 282, 769
BstMAI GTCTC 2 cut(s) 167, 722
BstMBI GATC 5 cut(s) 180, 198, 234, 279, 766
BstMCI CGRYCG 3 cut(s) 49, 82, 160
BstMWI GCNNNNNNNGC 5 cut(s) 48, 69, 102, 111, 381
BstNI CCWGG 3 cut(s) 255, 634, 800
BstPAI GACNNNNGTC 1 cut(s) 84
BstPI GGTNACC 1 cut(s) 505
BstSCI CCNGG 6 cut(s) 253, 302, 303, 320, 632, 798
BstSFI CTRYAG 1 cut(s) 596
BstUI CGCG 5 cut(s) 51, 66, 72, 90, 105
BstV1I GCAGC 2 cut(s) 396, 582
BstV2I GAAGAC 1 cut(s) 677
BstX2I RGATCY 2 cut(s) 180, 198
BstYI RGATCY 2 cut(s) 180, 198
BstZI CGGCCG 2 cut(s) 46, 157
BtgI CCRYGG 5 cut(s) 49, 64, 82, 409, 553
BtrI CACGTC 1 cut(s) 364
BtsCI GGATG 2 cut(s) 543, 629
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 3 cut(s) 98, 112, 546
CciI TCATGA 1 cut(s) 273
CfoI GCGC 1 cut(s) 23
Cfr10I RCCGGY 2 cut(s) 286, 308
Cfr13I GGNCC 4 cut(s) 289, 306, 318, 639
Cfr42I CCGCGG 2 cut(s) 52, 67
Cfr9I CCCGGG 1 cut(s) 303
CseI GACGC 4 cut(s) 78, 89, 364, 812
Csp6I GTAC 1 cut(s) 140
CviAII CATG 2 cut(s) 274, 283
CviQI GTAC 1 cut(s) 140
DinI GGCGCC 1 cut(s) 22
DpnI GATC 5 cut(s) 182, 200, 236, 281, 768
DpnII GATC 5 cut(s) 180, 198, 234, 279, 766
DriI GACNNNNNGTC 1 cut(s) 374
EaeI YGGCCR 5 cut(s) 46, 112, 157, 358, 570
EagI CGGCCG 2 cut(s) 46, 157
Eam1105I GACNNNNNGTC 1 cut(s) 374
EclXI CGGCCG 2 cut(s) 46, 157
Eco147I AGGCCT 2 cut(s) 332, 824
Eco47I GGWCC 3 cut(s) 289, 318, 639
Eco52I CGGCCG 2 cut(s) 46, 157
Eco88I CYCGRG 1 cut(s) 303
Eco91I GGTNACC 1 cut(s) 505
EcoO109I RGGNCCY 1 cut(s) 318
EcoO65I GGTNACC 1 cut(s) 505
EcoRI GAATTC 1 cut(s) 716
EcoRII CCWGG 3 cut(s) 253, 632, 798
EgeI GGCGCC 1 cut(s) 22
EheI GGCGCC 1 cut(s) 22
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 2 cut(s) 277, 286
FaiI YATR 5 cut(s) 275, 284, 489, 699, 762
FaqI GGGAC 1 cut(s) 730
FatI CATG 2 cut(s) 273, 282
FauI CCCGC 1 cut(s) 447
FokI GGATG 2 cut(s) 550, 616
FspBI CTAG 1 cut(s) 576
GlaI GCGC 1 cut(s) 22
GsuI CTGGAG 2 cut(s) 212, 742
HaeII RGCGCY 1 cut(s) 24
HapII CCGG 7 cut(s) 287, 304, 309, 322, 446, 510, 561
HgaI GACGC 4 cut(s) 78, 89, 364, 812
HhaI GCGC 1 cut(s) 23
Hin1I GRCGYC 3 cut(s) 21, 100, 375
Hin1II CATG 2 cut(s) 277, 286
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 5 cut(s) 54, 369, 442, 649, 730
HpaII CCGG 7 cut(s) 287, 304, 309, 322, 446, 510, 561
HphI GGTGA 3 cut(s) 41, 460, 499
Hpy166II GTNNAC 2 cut(s) 624, 642
Hpy188I TCNGA 5 cut(s) 59, 315, 368, 656, 690
Hpy188III TCNNGA 5 cut(s) 191, 274, 292, 706, 721
Hpy8I GTNNAC 2 cut(s) 624, 642
Hpy99I CGWCG 5 cut(s) 105, 341, 344, 347, 368
HpyAV CCTTC 2 cut(s) 343, 583
HpyCH4III ACNGT 3 cut(s) 83, 493, 532
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 3 cut(s) 384, 501, 598
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 69, 102, 111, 381
HpySE526I ACGT 1 cut(s) 363
Hsp92I GRCGYC 3 cut(s) 21, 100, 375
Hsp92II CATG 2 cut(s) 277, 286
HspAI GCGC 1 cut(s) 21
KasI GGCGCC 1 cut(s) 20
KpnI GGTACC 1 cut(s) 143
KspI CCGCGG 2 cut(s) 52, 67
Kzo9I GATC 5 cut(s) 180, 198, 234, 279, 766
LmnI GCTCC 5 cut(s) 193, 219, 226, 413, 553
Lsp1109I GCAGC 2 cut(s) 396, 582
MaeI CTAG 1 cut(s) 576
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 6 cut(s) 119, 145, 458, 467, 505, 526
MalI GATC 5 cut(s) 182, 200, 236, 281, 768
MboI GATC 5 cut(s) 180, 198, 234, 279, 766
MboII GAAGA 3 cut(s) 289, 677, 761
MflI RGATCY 2 cut(s) 180, 198
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 1 cut(s) 716
Mly113I GGCGCC 1 cut(s) 21
MlyI GAGTC 3 cut(s) 363, 643, 724
MmeI TCCRAC 1 cut(s) 346
MspA1I CMGCKG 3 cut(s) 26, 51, 66
MspI CCGG 7 cut(s) 287, 304, 309, 322, 446, 510, 561
MspR9I CCNGG 6 cut(s) 255, 304, 305, 322, 634, 800
MvaI CCWGG 3 cut(s) 255, 634, 800
MvnI CGCG 5 cut(s) 51, 66, 72, 90, 105
MwoI GCNNNNNNNGC 5 cut(s) 48, 69, 102, 111, 381
NarI GGCGCC 1 cut(s) 21
NciI CCSGG 3 cut(s) 304, 305, 322
NdeII GATC 5 cut(s) 180, 198, 234, 279, 766
NlaIII CATG 2 cut(s) 277, 286
NlaIV GGNNCC 7 cut(s) 22, 141, 320, 543, 559, 582, 640
NmeAIII GCCGAG 2 cut(s) 135, 351
NmuCI GTSAC 3 cut(s) 119, 145, 505
PagI TCATGA 1 cut(s) 273
PceI AGGCCT 2 cut(s) 332, 824
PcsI WCGNNNNNNNCGW 3 cut(s) 162, 345, 372
PfeI GAWTC 2 cut(s) 54, 442
PflFI GACNNNGTC 1 cut(s) 269
PfoI TCCNGGA 1 cut(s) 798
PleI GAGTC 3 cut(s) 363, 643, 724
PluTI GGCGCC 1 cut(s) 24
PpsI GAGTC 3 cut(s) 363, 643, 724
PpuMI RGGWCCY 1 cut(s) 318
PshAI GACNNNNGTC 1 cut(s) 84
Psp5II RGGWCCY 1 cut(s) 318
Psp6I CCWGG 3 cut(s) 253, 632, 798
PspEI GGTNACC 1 cut(s) 505
PspGI CCWGG 3 cut(s) 253, 632, 798
PspN4I GGNNCC 7 cut(s) 22, 141, 320, 543, 559, 582, 640
PspPI GGNCC 4 cut(s) 289, 306, 318, 639
PspPPI RGGWCCY 1 cut(s) 318
PstI CTGCAG 1 cut(s) 600
PsuI RGATCY 2 cut(s) 180, 198
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
SacII CCGCGG 2 cut(s) 52, 67
Sau3AI GATC 5 cut(s) 180, 198, 234, 279, 766
Sau96I GGNCC 4 cut(s) 289, 306, 318, 639
SchI GAGTC 3 cut(s) 363, 643, 724
ScrFI CCNGG 6 cut(s) 255, 304, 305, 322, 634, 800
SduI GDGCHC 1 cut(s) 231
SfcI CTRYAG 1 cut(s) 596
SfoI GGCGCC 1 cut(s) 22
Sfr303I CCGCGG 2 cut(s) 52, 67
SgrBI CCGCGG 2 cut(s) 52, 67
SinI GGWCC 3 cut(s) 289, 318, 639
SmaI CCCGGG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 1 cut(s) 716
SseBI AGGCCT 2 cut(s) 332, 824
SspDI GGCGCC 1 cut(s) 20
SspMI CTAG 1 cut(s) 576
StuI AGGCCT 2 cut(s) 332, 824
StyD4I CCNGG 6 cut(s) 253, 302, 303, 320, 632, 798
TaaI ACNGT 3 cut(s) 83, 493, 532
TaiI ACGT 1 cut(s) 366
TaqI TCGA 2 cut(s) 240, 819
TasI AATT 1 cut(s) 716
TauI GCSGC 8 cut(s) 21, 26, 51, 66, 93, 96, 117, 575
TfiI GAWTC 2 cut(s) 54, 442
TscAI CASTG 1 cut(s) 150
TseFI GTSAC 3 cut(s) 119, 145, 505
TseI GCWGC 2 cut(s) 384, 595
Tsp45I GTSAC 3 cut(s) 119, 145, 505
TspDTI ATGAA 2 cut(s) 290, 618
TspGWI ACGGA 1 cut(s) 398
TspMI CCCGGG 1 cut(s) 303
TspRI CASTG 1 cut(s) 150
Tth111I GACNNNGTC 1 cut(s) 269
VpaK11BI GGWCC 3 cut(s) 289, 318, 639
XapI RAATTY 1 cut(s) 716
XmaI CCCGGG 1 cut(s) 303
XspI CTAG 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.