Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000213.1

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Reverse (-)

16571 .. 20218

Gene Structure 3648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000213.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgaaacgcggatttcactcccgaaaaagaacaagtatttgcaatctcgcggtggctgtcattgaatttagaaggggtgctgctgatagcataatgagcatagatggaggagatgggactcttgcggttccacaactagcaattgggagactggagaaaattgattgcttcttcgtcgttgagatcttcgttgaccataatggcagcgaccactgtgaacaatggcagagctggaaggttcgagaggcagcaactccatcccgttcggcaaacgactttgtctgttcgattcaagccggcgtcttcctcgactttatggatgaaagcggaggcggcgccactggcgagcgtggaggcttcggcagcggaatcggaggcttgaaggtctttgtcgtcggcgacagcaaaagccatgtcggactcggcgtcaagtgcagcaaggaggttgctactgctcttcgtggagccattattgtggctaagctgtgggtgattcctgtgaggaggggttacaagatcggaaagccccacaccaagcattgcaaggtcaccggaaagtgtggctctgttatagtggggatggtgcttgctccttgtggttctagtattgtggtggctagggttcccaagaaggtgttccaatttgctggtattgatgatgtgttcacttcatccaggggatctaccaagactctcgaaactttgtcaaggaataatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

240

Amino Acids

25.58

Weight (kDa)

9.36

Isoelectric Point (pI)

28.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AccII	CGCG	2 cut(s)	9, 50
AciI	CCGC	6 cut(s)	9, 50, 125, 327, 333, 366
AclWI	GGATC	1 cut(s)	688
AcsI	RAATTY	1 cut(s)	65
AcyI	GRCGYC	3 cut(s)	300, 336, 426
AgsI	TTSAA	3 cut(s)	65, 293, 382
AhdI	GACNNNNNGTC	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	674
AjuI	GAANNNNNNNTTGG	2 cut(s)	620, 652
AluBI	AGCT	2 cut(s)	231, 484
AluI	AGCT	2 cut(s)	231, 484
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	688
ApeKI	GCWGC	5 cut(s)	80, 204, 248, 363, 435
ApoI	RAATTY	1 cut(s)	65
ArsI	GACNNNNNNTTYG	2 cut(s)	399, 431
Asp700I	GAANNNNTTC	1 cut(s)	635
AspLEI	GCGC	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	502, 541
BanI	GGYRCC	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	295
BbvI	GCAGC	5 cut(s)	67, 216, 260, 375, 447
BccI	CCATC	4 cut(s)	98, 107, 265, 574
BcgI	CGANNNNNNTGC	2 cut(s)	352, 386
BciT130I	CCWGG	1 cut(s)	676
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	3 cut(s)	137, 603, 618
BfoI	RGCGCY	1 cut(s)	339
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	6 cut(s)	81, 205, 249, 334, 364, 436
BlpI	GCTNAGC	1 cut(s)	480
BlsI	GCNGC	6 cut(s)	82, 206, 250, 335, 365, 437
Bme1390I	CCNGG	1 cut(s)	676
BmeRI	GACNNNNNGTC	1 cut(s)	425
BmiI	GGNNCC	4 cut(s)	129, 337, 466, 624
BmrFI	CCNGG	1 cut(s)	676
BpiI	GAAGAC	1 cut(s)	295
BpmI	CTGGAG	1 cut(s)	173
Bpu1102I	GCTNAGC	1 cut(s)	480
BsaHI	GRCGYC	3 cut(s)	300, 336, 426
BsaJI	CCNNGG	1 cut(s)	675
BsaWI	WCCGGW	1 cut(s)	551
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	2 cut(s)	156, 346
Bse3DI	GCAATG	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	676
BseDI	CCNNGG	1 cut(s)	675
BseGI	GGATG	4 cut(s)	257, 325, 585, 671
BseMI	GCAATG	1 cut(s)	538
BseNI	ACTGG	2 cut(s)	156, 346
BseRI	GAGGAG	2 cut(s)	123, 517
BseXI	GCAGC	5 cut(s)	67, 216, 260, 375, 447
BsgI	GTGCAG	1 cut(s)	454
Bsh1236I	CGCG	2 cut(s)	9, 50
BshNI	GGYRCC	1 cut(s)	335
BsiSI	CCGG	2 cut(s)	297, 552
BslFI	GGGAC	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	130
Bsp143I	GATC	3 cut(s)	183, 516, 680
Bsp1720I	GCTNAGC	1 cut(s)	480
BspACI	CCGC	6 cut(s)	9, 50, 125, 327, 333, 366
BspFNI	CGCG	2 cut(s)	9, 50
BspLI	GGNNCC	4 cut(s)	129, 337, 466, 624
BspPI	GGATC	1 cut(s)	688
BspQI	GCTCTTC	1 cut(s)	462
BspT107I	GGYRCC	1 cut(s)	335
BsrDI	GCAATG	1 cut(s)	538
BsrFI	RCCGGY	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	156, 346
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	675
BssMI	GATC	3 cut(s)	183, 516, 680
BssNI	GRCGYC	3 cut(s)	300, 336, 426
Bst2UI	CCWGG	1 cut(s)	676
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	462
BstACI	GRCGYC	3 cut(s)	300, 336, 426
BstC8I	GCNNGC	3 cut(s)	298, 347, 588
BstDEI	CTNAG	1 cut(s)	480
BstEII	GGTNACC	1 cut(s)	547
BstF5I	GGATG	4 cut(s)	257, 325, 585, 671
BstFNI	CGCG	2 cut(s)	9, 50
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	3 cut(s)	186, 519, 683
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	3 cut(s)	183, 516, 680
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 333, 342, 363, 432
BstNI	CCWGG	1 cut(s)	676
BstPI	GGTNACC	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	674
BstUI	CGCG	2 cut(s)	9, 50
BstV1I	GCAGC	5 cut(s)	67, 216, 260, 375, 447
BstV2I	GAAGAC	1 cut(s)	295
BstX2I	RGATCY	2 cut(s)	183, 680
BstXI	CCANNNNNNTGG	2 cut(s)	475, 647
BstYI	RGATCY	2 cut(s)	183, 680
BtsCI	GGATG	4 cut(s)	257, 325, 585, 671
BtsIMutI	CAGTG	2 cut(s)	211, 339
Cac8I	GCNNGC	3 cut(s)	298, 347, 588
CfoI	GCGC	1 cut(s)	338
Cfr10I	RCCGGY	1 cut(s)	296
CseI	GACGC	2 cut(s)	289, 415
CviAII	CATG	1 cut(s)	413
DdeI	CTNAG	1 cut(s)	480
DinI	GGCGCC	1 cut(s)	337
DpnI	GATC	3 cut(s)	185, 518, 682
DpnII	GATC	3 cut(s)	183, 516, 680
DriI	GACNNNNNGTC	1 cut(s)	425
Eam1104I	CTCTTC	1 cut(s)	462
Eam1105I	GACNNNNNGTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	462
Eco91I	GGTNACC	1 cut(s)	547
EcoO65I	GGTNACC	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	674
EgeI	GGCGCC	1 cut(s)	337
EheI	GGCGCC	1 cut(s)	337
FaeI	CATG	1 cut(s)	416
FaiI	YATR	6 cut(s)	92, 101, 198, 317, 414, 572
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	1 cut(s)	412
Fnu4HI	GCNGC	6 cut(s)	81, 205, 249, 334, 364, 436
FokI	GGATG	4 cut(s)	244, 332, 592, 658
Fsp4HI	GCNGC	6 cut(s)	81, 205, 249, 334, 364, 436
FspBI	CTAG	3 cut(s)	137, 603, 618
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	6 cut(s)	81, 205, 249, 334, 364, 436
GsuI	CTGGAG	1 cut(s)	173
HaeII	RGCGCY	1 cut(s)	339
HapII	CCGG	2 cut(s)	297, 552
HgaI	GACGC	2 cut(s)	289, 415
HhaI	GCGC	1 cut(s)	338
Hin1I	GRCGYC	3 cut(s)	300, 336, 426
Hin1II	CATG	1 cut(s)	416
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	6 cut(s)	118, 289, 369, 420, 493, 691
HpaII	CCGG	2 cut(s)	297, 552
HphI	GGTGA	2 cut(s)	502, 541
Hpy166II	GTNNAC	3 cut(s)	193, 218, 666
Hpy188I	TCNGA	3 cut(s)	374, 419, 521
Hpy188III	TCNNGA	3 cut(s)	21, 242, 695
Hpy8I	GTNNAC	3 cut(s)	193, 218, 666
Hpy99I	CGWCG	2 cut(s)	179, 398
HpyAV	CCTTC	4 cut(s)	66, 229, 376, 625
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	3 cut(s)	42, 435, 543
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 333, 342, 363, 432
HpyF3I	CTNAG	1 cut(s)	480
Hsp92I	GRCGYC	3 cut(s)	300, 336, 426
Hsp92II	CATG	1 cut(s)	416
HspAI	GCGC	1 cut(s)	336
KasI	GGCGCC	1 cut(s)	335
KroI	GCCGGC	1 cut(s)	296
KroNI	GCCGGC	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	183, 516, 680
LguI	GCTCTTC	1 cut(s)	462
LmnI	GCTCC	2 cut(s)	464, 595
LpnPI	CCDG	9 cut(s)	137, 217, 310, 327, 510, 565, 633, 661, 688
Lsp1109I	GCAGC	5 cut(s)	67, 216, 260, 375, 447
MaeI	CTAG	3 cut(s)	137, 603, 618
MaeIII	GTNAC	2 cut(s)	509, 547
MalI	GATC	3 cut(s)	185, 518, 682
MboI	GATC	3 cut(s)	183, 516, 680
MboII	GAAGA	4 cut(s)	163, 178, 295, 449
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	2 cut(s)	183, 680
MluCI	AATT	4 cut(s)	65, 141, 159, 641
Mly113I	GGCGCC	1 cut(s)	336
MlyI	GAGTC	3 cut(s)	112, 414, 685
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	9 cut(s)	101, 238, 317, 323, 347, 368, 436, 495, 498
MroNI	GCCGGC	1 cut(s)	296
MroXI	GAANNNNTTC	1 cut(s)	635
MslI	CAYNNNNRTG	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	366
MspI	CCGG	2 cut(s)	297, 552
MspR9I	CCNGG	1 cut(s)	676
MunI	CAATTG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	676
MvnI	CGCG	2 cut(s)	9, 50
MwoI	GCNNNNNNNGC	5 cut(s)	96, 333, 342, 363, 432
NaeI	GCCGGC	1 cut(s)	298
NarI	GGCGCC	1 cut(s)	336
NdeII	GATC	3 cut(s)	183, 516, 680
NgoMIV	GCCGGC	1 cut(s)	296
NlaIII	CATG	1 cut(s)	416
NlaIV	GGNNCC	4 cut(s)	129, 337, 466, 624
NmeAIII	GCCGAG	1 cut(s)	402
NmuCI	GTSAC	1 cut(s)	547
PciSI	GCTCTTC	1 cut(s)	462
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
PdiI	GCCGGC	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	635
PfeI	GAWTC	3 cut(s)	289, 369, 493
PflFI	GACNNNGTC	1 cut(s)	278
PkrI	GCNGC	6 cut(s)	82, 206, 250, 335, 365, 437
PleI	GAGTC	3 cut(s)	112, 414, 685
PluTI	GGCGCC	1 cut(s)	339
PpsI	GAGTC	3 cut(s)	112, 414, 685
Psp6I	CCWGG	1 cut(s)	674
PspEI	GGTNACC	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	674
PspN4I	GGNNCC	4 cut(s)	129, 337, 466, 624
PsuI	RGATCY	2 cut(s)	183, 680
PsyI	GACNNNGTC	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	473
SapI	GCTCTTC	1 cut(s)	462
SatI	GCNGC	6 cut(s)	81, 205, 249, 334, 364, 436
Sau3AI	GATC	3 cut(s)	183, 516, 680
SchI	GAGTC	3 cut(s)	112, 414, 685
ScrFI	CCNGG	1 cut(s)	676
SetI	ASST	7 cut(s)	233, 240, 387, 447, 486, 549, 636
SfoI	GGCGCC	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	473
Sse9I	AATT	4 cut(s)	65, 141, 159, 641
SsiI	CCGC	6 cut(s)	9, 50, 125, 327, 333, 366
SspDI	GGCGCC	1 cut(s)	335
SspMI	CTAG	3 cut(s)	137, 603, 618
StyD4I	CCNGG	1 cut(s)	674
TaaI	ACNGT	1 cut(s)	215
TaqI	TCGA	4 cut(s)	241, 287, 309, 696
TasI	AATT	4 cut(s)	65, 141, 159, 641
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	3 cut(s)	289, 369, 493
TscAI	CASTG	2 cut(s)	218, 346
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	5 cut(s)	80, 204, 248, 363, 435
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	3 cut(s)	17, 336, 660
TspRI	CASTG	2 cut(s)	218, 346
Tth111I	GACNNNGTC	1 cut(s)	278
XapI	RAATTY	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	635
XspI	CTAG	3 cut(s)	137, 603, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.