Rroxscaffold_5G00343290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000788
Physical Location & Seq
Forward (+)
12604193 .. 12606062
1870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00343290.1

Sequence Viewer

Length: 303 bp
ATGGCCATAGGACGGGAAATTAGCCAACGCGCCATCACGAATGGTTTGCTGACTTCAACAGCTGCCGATCGTGTTCTGCAAAAGGAAGTTGAAAAAACACAGAATCAATCAAGAGGTCGTGCGATAAAAAGAGCGTTTGGCTGTTATGAAGACAAGTTCATTCCAATTCCTATTGCTCTCATTGATCTCCATCATCAGGCATTCCTACAAGTAAATCTGGGTTATCATCATCAATTGTATCCTAATTTCTTTCGCTTCTGTGAGCATCACCACTTGTGCTCTATATATTCTGGTTCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.52

Weight (kDa)

8.93

Isoelectric Point (pI)

21.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 30
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 2 cut(s) 12, 196
AgsI TTSAA 2 cut(s) 57, 92
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Alw21I GWGCWC 1 cut(s) 281
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 62
AspLEI GCGC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 260
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 281
BbvI GCAGC 1 cut(s) 49
BccI CCATC 2 cut(s) 41, 198
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BciVI GTATCC 1 cut(s) 249
BfuI GTATCC 1 cut(s) 249
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmsI GCATC 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 189
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 196
Bse8I GATNNNNATC 1 cut(s) 189
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 12, 196
BseXI GCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 281
BslI CCNNNNNNNGG 2 cut(s) 12, 196
BsmI GAATGC 1 cut(s) 200
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 2 cut(s) 67, 184
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 30
BssMI GATC 2 cut(s) 67, 184
BstFNI CGCG 1 cut(s) 30
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 2 cut(s) 70, 187
BstMBI GATC 2 cut(s) 67, 184
BstMCI CGRYCG 1 cut(s) 70
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 156
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 5
CfoI GCGC 1 cut(s) 32
CviJI RGCY 4 cut(s) 5, 24, 62, 141
CviKI_1 RGCY 4 cut(s) 5, 24, 62, 141
DpnI GATC 2 cut(s) 69, 186
DpnII GATC 2 cut(s) 67, 184
EaeI YGGCCR 1 cut(s) 3
FaiI YATR 4 cut(s) 8, 147, 284, 286
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
GlaI GCGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 32
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 1 cut(s) 103
HphI GGTGA 1 cut(s) 260
Hpy188III TCNNGA 2 cut(s) 37, 111
HpyCH4V TGCA 1 cut(s) 79
HspAI GCGC 1 cut(s) 30
Kzo9I GATC 2 cut(s) 67, 184
LpnPI CCDG 3 cut(s) 182, 203, 276
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 274
MalI GATC 2 cut(s) 69, 186
MboI GATC 2 cut(s) 67, 184
MboII GAAGA 1 cut(s) 161
MfeI CAATTG 1 cut(s) 233
MhlI GDGCHC 1 cut(s) 281
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 18, 165, 233, 244
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 1 cut(s) 107
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 62
MunI CAATTG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 200
MvnI CGCG 1 cut(s) 30
NdeII GATC 2 cut(s) 67, 184
PctI GAATGC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 64
Ple19I CGATCG 1 cut(s) 70
PvuI CGATCG 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 62
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 67, 184
SduI GDGCHC 1 cut(s) 281
SetI ASST 2 cut(s) 64, 118
SfaNI GCATC 1 cut(s) 274
Sse9I AATT 4 cut(s) 18, 165, 233, 244
TasI AATT 4 cut(s) 18, 165, 233, 244
TfiI GAWTC 1 cut(s) 103
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 3 cut(s) 148, 162, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.