Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Reverse (-)

17459685 .. 17461539

Gene Structure 1855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCCGAACGTGGTGGAGAACGTGGTGTTGAGCGTGGTGGAGAACGTGGTGATTTCGGACGAGGATTCGGAGGCCGTGGAGGTCGTGGAGATCGTGGAGGGCGTGGACGTGGAGGCCGTGGTGGTCGTCGTGGAGGGCGTGCCAGTGAAGAAGAGAAATGGGTTCCAGTGACCAAGCTTGGTCGTCTCGTGGCGGCTGGTCATATCAAGCAGATAGAGCAGATCTATCTTCATTCACTCCCGGTTAAGGAGTACCAGATCATTGATATGCTCATCGGTCCAACATTGAAGGATGAGGTAATGAAAATCATGCCGGTTCAGAAACAAACCAGGGCTGGTCAAAGGACTAGATTCAAGGCCTTTGTTGTCGTTGGAGATGGTAATGGTCATGTTGGGTTGGGAGTGAAATGCTCTAAGGAAGTTGCTACGGCCATTAGAGGAGCGATTATTCTCGCTAAGCTGTCTGTTGTTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACATACGGTTCCTTGTAAGGTGACTGGGAAGTGTGGATCTGTGACAGTGAGGATGGTTCCAGCTCCTAGAGGTTCTGGTATTGTGGCTGCTAGAGTTCCTAAGAAGGTTCTTCAATTCGCTGGAATTGATGATGTTTTCACTTCCTCCAGGGGATCCACCAAAACTCTTGGAAACTTCGTCAAGGCTACATTCGATTGCCTTCAGAAGACTTACGGATTCCTTACCCCAGAGTTCTGGAAGGAGACAAGATTCTCTAGATCACCATACCAAGAGCACACTGATTTCCTGGCGTCCAAGGCTCTTTCGACCAGCAAACCCGACCCAGTGGTTGAAGACCAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

285

Amino Acids

30.88

Weight (kDa)

10.3

Isoelectric Point (pI)

30.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	96 - 160	2.2e-30	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	180 - 252	2.1e-25	Ribosomal protein S5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	3 cut(s)	556, 660, 673
AcoI	YGGCCR	2 cut(s)	3, 429
AcuI	CTGAAG	1 cut(s)	698
AcyI	GRCGYC	1 cut(s)	803
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	4 cut(s)	289, 355, 626, 845
AjiI	CACGTC	1 cut(s)	110
AjnI	CCWGG	3 cut(s)	329, 659, 798
AluBI	AGCT	3 cut(s)	178, 460, 575
AluI	AGCT	3 cut(s)	178, 460, 575
Alw21I	GWGCWC	1 cut(s)	789
Alw26I	GTCTC	2 cut(s)	191, 749
AlwI	GGATC	3 cut(s)	556, 660, 673
AoxI	GGCC	5 cut(s)	3, 73, 115, 357, 429
ApeKI	GCWGC	1 cut(s)	599
AspS9I	GGNCC	1 cut(s)	278
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	3 cut(s)	62, 544, 765
AvaII	GGWCC	1 cut(s)	278
BamHI	GGATCC	1 cut(s)	665
BauI	CACGAG	1 cut(s)	188
BbsI	GAAGAC	2 cut(s)	725, 852
Bbv12I	GWGCWC	1 cut(s)	789
BbvI	GCAGC	1 cut(s)	586
BccI	CCATC	2 cut(s)	371, 559
BceAI	ACGGC	3 cut(s)	60, 102, 444
BciT130I	CCWGG	3 cut(s)	331, 661, 800
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	2 cut(s)	191, 749
BfaI	CTAG	4 cut(s)	348, 579, 603, 768
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	2 cut(s)	195, 600
BlpI	GCTNAGC	1 cut(s)	456
BlsI	GCNGC	2 cut(s)	196, 601
Bme1390I	CCNGG	4 cut(s)	242, 331, 661, 800
Bme18I	GGWCC	1 cut(s)	278
BmgBI	CACGTC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	4 cut(s)	165, 522, 570, 667
BmrFI	CCNGG	4 cut(s)	242, 331, 661, 800
BmrI	ACTGGG	3 cut(s)	499, 546, 830
BmuI	ACTGGG	3 cut(s)	499, 546, 830
BpiI	GAAGAC	2 cut(s)	725, 852
BpmI	CTGGAG	1 cut(s)	643
Bpu1102I	GCTNAGC	1 cut(s)	456
BpuMI	CCSGG	1 cut(s)	242
BsaHI	GRCGYC	1 cut(s)	803
BsaJI	CCNNGG	5 cut(s)	76, 118, 330, 660, 807
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse118I	RCCGGY	1 cut(s)	313
Bse1I	ACTGG	6 cut(s)	144, 167, 473, 494, 541, 836
BseBI	CCWGG	3 cut(s)	331, 661, 800
BseDI	CCNNGG	5 cut(s)	76, 118, 330, 660, 807
BseGI	GGATG	2 cut(s)	298, 570
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseNI	ACTGG	6 cut(s)	144, 167, 473, 494, 541, 836
BseRI	GAGGAG	2 cut(s)	453, 493
BseXI	GCAGC	1 cut(s)	586
BshFI	GGCC	5 cut(s)	5, 75, 117, 359, 431
BsiHKAI	GWGCWC	1 cut(s)	789
BsiSI	CCGG	2 cut(s)	242, 314
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	2 cut(s)	191, 749
BsmBI	CGTCTC	1 cut(s)	191
BsnI	GGCC	5 cut(s)	5, 75, 117, 359, 431
Bsp1286I	GDGCHC	1 cut(s)	789
Bsp143I	GATC	6 cut(s)	91, 222, 258, 548, 665, 770
Bsp1720I	GCTNAGC	1 cut(s)	456
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	5 cut(s)	5, 75, 117, 359, 431
BspLI	GGNNCC	4 cut(s)	165, 522, 570, 667
BspPI	GGATC	3 cut(s)	556, 660, 673
BsrFI	RCCGGY	1 cut(s)	313
BsrI	ACTGG	6 cut(s)	144, 167, 473, 494, 541, 836
BssAI	RCCGGY	1 cut(s)	313
BssECI	CCNNGG	5 cut(s)	76, 118, 330, 660, 807
BssMI	GATC	6 cut(s)	91, 222, 258, 548, 665, 770
BssNI	GRCGYC	1 cut(s)	803
BssSI	CACGAG	1 cut(s)	188
BssT1I	CCWWGG	1 cut(s)	807
Bst2BI	CACGAG	1 cut(s)	188
Bst2UI	CCWGG	3 cut(s)	331, 661, 800
Bst4CI	ACNGT	2 cut(s)	520, 559
Bst6I	CTCTTC	1 cut(s)	147
BstACI	GRCGYC	1 cut(s)	803
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	3 cut(s)	414, 456, 612
BstDSI	CCRYGG	2 cut(s)	76, 118
BstF5I	GGATG	2 cut(s)	298, 570
BstKTI	GATC	6 cut(s)	94, 225, 261, 551, 668, 773
BstMAI	GTCTC	2 cut(s)	191, 749
BstMBI	GATC	6 cut(s)	91, 222, 258, 548, 665, 770
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 809
BstNI	CCWGG	3 cut(s)	331, 661, 800
BstSCI	CCNGG	4 cut(s)	240, 329, 659, 798
BstV1I	GCAGC	1 cut(s)	586
BstV2I	GAAGAC	2 cut(s)	725, 852
BstX2I	RGATCY	3 cut(s)	222, 548, 665
BstXI	CCANNNNNNTGG	1 cut(s)	747
BstYI	RGATCY	3 cut(s)	222, 548, 665
BsuRI	GGCC	5 cut(s)	5, 75, 117, 359, 431
BtgI	CCRYGG	2 cut(s)	76, 118
BtrI	CACGTC	1 cut(s)	110
BtsCI	GGATG	2 cut(s)	298, 570
BtsIMutI	CAGTG	6 cut(s)	151, 174, 480, 564, 789, 843
Cac8I	GCNNGC	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	278
CseI	GACGC	1 cut(s)	792
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	2 cut(s)	310, 389
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	3 cut(s)	414, 456, 612
DpnI	GATC	6 cut(s)	93, 224, 260, 550, 667, 772
DpnII	GATC	6 cut(s)	91, 222, 258, 548, 665, 770
EaeI	YGGCCR	2 cut(s)	3, 429
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	807
Eco147I	AGGCCT	1 cut(s)	359
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	698
EcoRII	CCWGG	3 cut(s)	329, 659, 798
EcoT14I	CCWWGG	1 cut(s)	807
ErhI	CCWWGG	1 cut(s)	807
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	2 cut(s)	313, 392
FaiI	YATR	6 cut(s)	204, 269, 311, 390, 516, 778
FatI	CATG	2 cut(s)	309, 388
Fnu4HI	GCNGC	2 cut(s)	195, 600
FokI	GGATG	2 cut(s)	305, 577
Fsp4HI	GCNGC	2 cut(s)	195, 600
FspBI	CTAG	4 cut(s)	348, 579, 603, 768
GluI	GCNGC	2 cut(s)	195, 600
GsuI	CTGGAG	1 cut(s)	643
HaeIII	GGCC	5 cut(s)	5, 75, 117, 359, 431
HapII	CCGG	2 cut(s)	242, 314
HgaI	GACGC	1 cut(s)	792
Hin1I	GRCGYC	1 cut(s)	803
Hin1II	CATG	2 cut(s)	313, 392
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	4 cut(s)	66, 351, 729, 762
HpaII	CCGG	2 cut(s)	242, 314
HphI	GGTGA	3 cut(s)	62, 544, 765
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188I	TCNGA	4 cut(s)	59, 71, 321, 717
Hpy188III	TCNNGA	2 cut(s)	748, 768
Hpy8I	GTNNAC	1 cut(s)	107
Hpy99I	CGWCG	1 cut(s)	132
HpyAV	CCTTC	4 cut(s)	283, 610, 722, 745
HpyCH4III	ACNGT	2 cut(s)	520, 559
HpyCH4IV	ACGT	4 cut(s)	10, 22, 46, 109
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 809
HpyF3I	CTNAG	3 cut(s)	414, 456, 612
HpySE526I	ACGT	4 cut(s)	10, 22, 46, 109
Hsp92I	GRCGYC	1 cut(s)	803
Hsp92II	CATG	2 cut(s)	313, 392
Kzo9I	GATC	6 cut(s)	91, 222, 258, 548, 665, 770
LmnI	GCTCC	2 cut(s)	440, 580
Lsp1109I	GCAGC	1 cut(s)	586
MaeI	CTAG	4 cut(s)	348, 579, 603, 768
MaeII	ACGT	4 cut(s)	10, 22, 46, 109
MaeIII	GTNAC	5 cut(s)	169, 485, 494, 532, 553
MalI	GATC	6 cut(s)	93, 224, 260, 550, 667, 772
MboI	GATC	6 cut(s)	91, 222, 258, 548, 665, 770
MboII	GAAGA	6 cut(s)	161, 164, 221, 614, 730, 857
MflI	RGATCY	3 cut(s)	222, 548, 665
MhlI	GDGCHC	1 cut(s)	789
MluCI	AATT	2 cut(s)	626, 636
MmeI	TCCRAC	2 cut(s)	305, 352
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	266
MspI	CCGG	2 cut(s)	242, 314
MspR9I	CCNGG	4 cut(s)	242, 331, 661, 800
MvaI	CCWGG	3 cut(s)	331, 661, 800
MwoI	GCNNNNNNNGC	2 cut(s)	217, 809
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	6 cut(s)	91, 222, 258, 548, 665, 770
NlaIII	CATG	2 cut(s)	313, 392
NlaIV	GGNNCC	4 cut(s)	165, 522, 570, 667
NmuCI	GTSAC	3 cut(s)	169, 532, 553
PceI	AGGCCT	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	4 cut(s)	91, 100, 115, 136
PfeI	GAWTC	4 cut(s)	66, 351, 729, 762
PkrI	GCNGC	2 cut(s)	196, 601
Psp6I	CCWGG	3 cut(s)	329, 659, 798
PspGI	CCWGG	3 cut(s)	329, 659, 798
PspN4I	GGNNCC	4 cut(s)	165, 522, 570, 667
PspPI	GGNCC	1 cut(s)	278
PsuI	RGATCY	3 cut(s)	222, 548, 665
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	2 cut(s)	195, 600
Sau3AI	GATC	6 cut(s)	91, 222, 258, 548, 665, 770
Sau96I	GGNCC	1 cut(s)	278
ScrFI	CCNGG	4 cut(s)	242, 331, 661, 800
SduI	GDGCHC	1 cut(s)	789
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	626, 636
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	4 cut(s)	348, 579, 603, 768
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	4 cut(s)	240, 329, 659, 798
StyI	CCWWGG	1 cut(s)	807
TaaI	ACNGT	2 cut(s)	520, 559
TaiI	ACGT	4 cut(s)	13, 25, 49, 112
TaqI	TCGA	2 cut(s)	705, 818
TaqII	GACCGA	1 cut(s)	266
TasI	AATT	2 cut(s)	626, 636
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	4 cut(s)	66, 351, 729, 762
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	6 cut(s)	151, 174, 480, 564, 796, 843
TseFI	GTSAC	3 cut(s)	169, 532, 553
TseI	GCWGC	1 cut(s)	599
Tsp45I	GTSAC	3 cut(s)	169, 532, 553
TspDTI	ATGAA	2 cut(s)	221, 317
TspGWI	ACGGA	1 cut(s)	741
TspRI	CASTG	6 cut(s)	151, 174, 480, 564, 796, 843
VpaK11BI	GGWCC	1 cut(s)	278
XbaI	TCTAGA	1 cut(s)	767
XspI	CTAG	4 cut(s)	348, 579, 603, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.