Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Reverse (-)

21805932 .. 21807496

Gene Structure 1565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G58983.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCGGAAAGAGGAGGAGAAAGCGGCGCAGAGCGTGGCGGTGACCGTGGTGACTTCGGGCGTGGATTCGGCGGTGGACGTGGAGGTGGCCGTGGCCGTGATCGTGGTCCAAGAGGCCGTGGAAGACGTGGAGGCCGTGCCTCGGAAGAAACGAAATGGGTTCCAGTGACCAAACTAGGTCGTCTAGTGGCTGACAATAAAATAACGAAGCTAGAGCAGATCTATCTTCATTCTCTCCCAGTAAAGGAGTACCAAATCATAGATCATCTTGTTGGTCCTACGTTGAAAGACGAGGTTATGAAGATCATGCCTGTTCAGAAACAAACCAGAGCTGGTCAAAGGACTAGATTCAAGGCCTTTGTTGTTGTTGGTGATGGAAATGGTCATGTTGGTTTGGGTGTCAAGTGTTCTAAGGAAGTTGCTACTGCCATTAGAGGAGCTATTATTCTTGCTAAGCTATCAGTGGTTCCGGTGAGGAGAGGTTATTGGGGGAATAAGATTGGGAAGCCACACACTGTGCCTTGTAAGGTTACTGGTAAATGTGGTTCTGTTACTGTGAGAATGGTTCCTGCTCCGAGAGGTTCTGGTATTGTTGCTGCTAGGGTTCCTAAGAAGGTTCTTCAGTTCGCTGGTATTGATGATGTCTTTACTTCTTCAAGAGGATCTACCAAAACCCTTGGAAACTTTGTCAAGGCTACATTCGATTGCTTACAGAAGACATATGGGTTCCTTACACCAGAGTTCTGGAAAGAGACTAGATTCTCCAGATCGCCGTACCAAGAGCACACTGATTTCCTGTCGACTAAGGCTGTTTCTGCAACCAAGGTTATCACTGAGGGTGAAGACCAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

284

Amino Acids

30.77

Weight (kDa)

10.26

Isoelectric Point (pI)

25.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	95 - 159	2.2e-30	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	179 - 251	2.1e-25	Ribosomal protein S5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	800
AciI	CCGC	4 cut(s)	5, 24, 39, 72
AclWI	GGATC	1 cut(s)	670
AcoI	YGGCCR	2 cut(s)	88, 94
AcuI	CTGAAG	1 cut(s)	605
AdeI	CACNNNGTG	1 cut(s)	517
AfaI	GTAC	2 cut(s)	251, 776
AfiI	CCNNNNNNNGG	2 cut(s)	142, 244
AgsI	TTSAA	3 cut(s)	286, 352, 657
AjiI	CACGTC	2 cut(s)	80, 128
AluBI	AGCT	5 cut(s)	211, 332, 440, 457, 851
AluI	AGCT	5 cut(s)	211, 332, 440, 457, 851
Alw21I	GWGCWC	1 cut(s)	786
Alw26I	GTCTC	1 cut(s)	746
AlwI	GGATC	1 cut(s)	670
AoxI	GGCC	5 cut(s)	88, 94, 115, 133, 354
ApeKI	GCWGC	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	2 cut(s)	107, 275
AsuHPI	GGTGA	5 cut(s)	53, 62, 383, 484, 851
AvaII	GGWCC	2 cut(s)	107, 275
BbsI	GAAGAC	3 cut(s)	130, 722, 849
Bbv12I	GWGCWC	1 cut(s)	786
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	1 cut(s)	368
BceAI	ACGGC	5 cut(s)	75, 81, 102, 120, 757
BcoDI	GTCTC	1 cut(s)	746
BfaI	CTAG	6 cut(s)	176, 185, 212, 345, 600, 756
BglII	AGATCT	1 cut(s)	219
BisI	GCNGC	2 cut(s)	25, 597
BlpI	GCTNAGC	1 cut(s)	453
BlsI	GCNGC	2 cut(s)	26, 598
Bme18I	GGWCC	2 cut(s)	107, 275
BmgBI	CACGTC	2 cut(s)	80, 128
BmgT120I	GGNCC	2 cut(s)	107, 275
BmiI	GGNNCC	5 cut(s)	162, 468, 567, 606, 728
BmrI	ACTGGG	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	233
BpiI	GAAGAC	3 cut(s)	130, 722, 849
BpmI	CTGGAG	1 cut(s)	748
Bpu1102I	GCTNAGC	1 cut(s)	453
BsaJI	CCNNGG	6 cut(s)	46, 91, 118, 141, 676, 822
BsaWI	WCCGGW	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 244
Bse1I	ACTGG	3 cut(s)	164, 239, 538
BseDI	CCNNGG	6 cut(s)	46, 91, 118, 141, 676, 822
BseLI	CCNNNNNNNGG	2 cut(s)	142, 244
BseMII	CTCAG	1 cut(s)	825
BseNI	ACTGG	3 cut(s)	164, 239, 538
BseRI	GAGGAG	4 cut(s)	27, 30, 450, 490
BseXI	GCAGC	1 cut(s)	583
BshFI	GGCC	5 cut(s)	90, 96, 117, 135, 356
BsiHKAI	GWGCWC	1 cut(s)	786
BsiSI	CCGG	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	142, 244
BsmAI	GTCTC	1 cut(s)	746
BsnI	GGCC	5 cut(s)	90, 96, 117, 135, 356
Bsp1286I	GDGCHC	1 cut(s)	786
Bsp143I	GATC	6 cut(s)	100, 219, 262, 303, 662, 767
Bsp1720I	GCTNAGC	1 cut(s)	453
BspACI	CCGC	4 cut(s)	5, 24, 39, 72
BspANI	GGCC	5 cut(s)	90, 96, 117, 135, 356
BspCNI	CTCAG	1 cut(s)	826
BspLI	GGNNCC	5 cut(s)	162, 468, 567, 606, 728
BspPI	GGATC	1 cut(s)	670
BsrI	ACTGG	3 cut(s)	164, 239, 538
BssECI	CCNNGG	6 cut(s)	46, 91, 118, 141, 676, 822
BssMI	GATC	6 cut(s)	100, 219, 262, 303, 662, 767
BssT1I	CCWWGG	2 cut(s)	676, 822
Bst4CI	ACNGT	3 cut(s)	47, 517, 556
BstDEI	CTNAG	5 cut(s)	411, 453, 609, 804, 834
BstDSI	CCRYGG	3 cut(s)	46, 91, 118
BstEII	GGTNACC	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	6 cut(s)	103, 222, 265, 306, 665, 770
BstMAI	GTCTC	1 cut(s)	746
BstMBI	GATC	6 cut(s)	100, 219, 262, 303, 662, 767
BstMWI	GCNNNNNNNGC	1 cut(s)	815
BstPI	GGTNACC	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	583
BstV2I	GAAGAC	3 cut(s)	130, 722, 849
BstX2I	RGATCY	2 cut(s)	219, 662
BstXI	CCANNNNNNTGG	1 cut(s)	744
BstYI	RGATCY	2 cut(s)	219, 662
BsuRI	GGCC	5 cut(s)	90, 96, 117, 135, 356
BtgI	CCRYGG	3 cut(s)	46, 91, 118
BtrI	CACGTC	2 cut(s)	80, 128
BtsIMutI	CAGTG	5 cut(s)	171, 468, 513, 786, 831
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	107, 275
Csp6I	GTAC	2 cut(s)	250, 775
CviAII	CATG	2 cut(s)	307, 386
CviQI	GTAC	2 cut(s)	250, 775
DdeI	CTNAG	5 cut(s)	411, 453, 609, 804, 834
DpnI	GATC	6 cut(s)	102, 221, 264, 305, 664, 769
DpnII	GATC	6 cut(s)	100, 219, 262, 303, 662, 767
DraIII	CACNNNGTG	1 cut(s)	517
EaeI	YGGCCR	2 cut(s)	88, 94
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	676, 822
Eco147I	AGGCCT	1 cut(s)	356
Eco47I	GGWCC	2 cut(s)	107, 275
Eco57I	CTGAAG	1 cut(s)	605
Eco91I	GGTNACC	1 cut(s)	41
EcoO65I	GGTNACC	1 cut(s)	41
EcoT14I	CCWWGG	2 cut(s)	676, 822
ErhI	CCWWGG	2 cut(s)	676, 822
FaeI	CATG	2 cut(s)	310, 389
FaiI	YATR	6 cut(s)	260, 299, 308, 387, 721, 723
FatI	CATG	2 cut(s)	306, 385
FauNDI	CATATG	1 cut(s)	721
FblI	GTMKAC	1 cut(s)	800
Fnu4HI	GCNGC	2 cut(s)	25, 597
Fsp4HI	GCNGC	2 cut(s)	25, 597
FspBI	CTAG	6 cut(s)	176, 185, 212, 345, 600, 756
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	2 cut(s)	25, 597
GsuI	CTGGAG	1 cut(s)	748
HaeIII	GGCC	5 cut(s)	90, 96, 117, 135, 356
HapII	CCGG	1 cut(s)	470
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	310, 389
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	801
HindII	GTYRAC	1 cut(s)	801
HindIII	AAGCTT	1 cut(s)	849
HinfI	GANTC	3 cut(s)	66, 348, 759
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	5 cut(s)	53, 62, 383, 484, 851
Hpy166II	GTNNAC	2 cut(s)	77, 801
Hpy188I	TCNGA	3 cut(s)	145, 318, 576
Hpy188III	TCNNGA	3 cut(s)	657, 745, 765
Hpy8I	GTNNAC	2 cut(s)	77, 801
HpyAV	CCTTC	1 cut(s)	607
HpyCH4III	ACNGT	3 cut(s)	47, 517, 556
HpyCH4IV	ACGT	3 cut(s)	79, 127, 281
HpyCH4V	TGCA	1 cut(s)	818
HpyF10VI	GCNNNNNNNGC	1 cut(s)	815
HpyF3I	CTNAG	5 cut(s)	411, 453, 609, 804, 834
HpySE526I	ACGT	3 cut(s)	79, 127, 281
Hsp92II	CATG	2 cut(s)	310, 389
HspAI	GCGC	1 cut(s)	27
Kzo9I	GATC	6 cut(s)	100, 219, 262, 303, 662, 767
LmnI	GCTCC	2 cut(s)	437, 577
Lsp1109I	GCAGC	1 cut(s)	583
MaeI	CTAG	6 cut(s)	176, 185, 212, 345, 600, 756
MaeII	ACGT	3 cut(s)	79, 127, 281
MaeIII	GTNAC	5 cut(s)	41, 50, 166, 529, 550
MalI	GATC	6 cut(s)	102, 221, 264, 305, 664, 769
MboI	GATC	6 cut(s)	100, 219, 262, 303, 662, 767
MboII	GAAGA	8 cut(s)	135, 158, 218, 313, 611, 645, 727, 854
MflI	RGATCY	2 cut(s)	219, 662
MhlI	GDGCHC	1 cut(s)	786
MseI	TTAA	1 cut(s)	853
MspI	CCGG	1 cut(s)	470
MwoI	GCNNNNNNNGC	1 cut(s)	815
NdeI	CATATG	1 cut(s)	721
NdeII	GATC	6 cut(s)	100, 219, 262, 303, 662, 767
NlaIII	CATG	2 cut(s)	310, 389
NlaIV	GGNNCC	5 cut(s)	162, 468, 567, 606, 728
NmuCI	GTSAC	3 cut(s)	41, 50, 166
PceI	AGGCCT	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	2 cut(s)	133, 149
PfeI	GAWTC	3 cut(s)	66, 348, 759
PkrI	GCNGC	2 cut(s)	26, 598
PspEI	GGTNACC	1 cut(s)	41
PspN4I	GGNNCC	5 cut(s)	162, 468, 567, 606, 728
PspPI	GGNCC	2 cut(s)	107, 275
PsrI	GAACNNNNNNTAC	2 cut(s)	529, 561
PsuI	RGATCY	2 cut(s)	219, 662
RsaI	GTAC	2 cut(s)	251, 776
RsaNI	GTAC	2 cut(s)	250, 775
SalI	GTCGAC	1 cut(s)	799
SaqAI	TTAA	1 cut(s)	853
SatI	GCNGC	2 cut(s)	25, 597
Sau3AI	GATC	6 cut(s)	100, 219, 262, 303, 662, 767
Sau96I	GGNCC	2 cut(s)	107, 275
SduI	GDGCHC	1 cut(s)	786
SinI	GGWCC	2 cut(s)	107, 275
SseBI	AGGCCT	1 cut(s)	356
SsiI	CCGC	4 cut(s)	5, 24, 39, 72
SspMI	CTAG	6 cut(s)	176, 185, 212, 345, 600, 756
StuI	AGGCCT	1 cut(s)	356
StyI	CCWWGG	2 cut(s)	676, 822
TaaI	ACNGT	3 cut(s)	47, 517, 556
TaiI	ACGT	3 cut(s)	82, 130, 284
TaqI	TCGA	2 cut(s)	702, 800
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	3 cut(s)	66, 348, 759
Tru1I	TTAA	1 cut(s)	853
Tru9I	TTAA	1 cut(s)	853
TscAI	CASTG	5 cut(s)	171, 468, 520, 793, 838
TseFI	GTSAC	3 cut(s)	41, 50, 166
TseI	GCWGC	1 cut(s)	596
Tsp45I	GTSAC	3 cut(s)	41, 50, 166
TspDTI	ATGAA	2 cut(s)	218, 314
TspRI	CASTG	5 cut(s)	171, 468, 520, 793, 838
VpaK11BI	GGWCC	2 cut(s)	107, 275
XmiI	GTMKAC	1 cut(s)	800
XspI	CTAG	6 cut(s)	176, 185, 212, 345, 600, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.